Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI14G1423 Tripterygium wilfordii HOM05D003935 ORTHO05D005096 1.7e-182 642.5 315 100.0
Manes.06G132800 Manihot esculenta HOM05D003935 ORTHO05D005096 1.6e-172 609.4 315 94.3
Eucgr.K00175 Eucalyptus grandis HOM05D003935 ORTHO05D005096 1.0e-171 606.7 315 94.3
CSS0046772 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.5e-170 602.8 315 93.0
Dinv16851 Davidia involucrata HOM05D003935 ORTHO05D005096 5.6e-170 600.9 315 93.0
Nn6g33882 Nelumbo nucifera HOM05D003935 ORTHO05D005096 7.4e-170 600.5 315 92.1
Cfa012922 Carpinus fangiana HOM05D003935 ORTHO05D005096 6.2e-169 597.4 315 91.1
TAR374G1483 Trochodendron aralioides HOM05D003935 ORTHO05D005096 1.1e-168 596.7 315 91.1
PGR142G1672 Punica granatum HOM05D003935 ORTHO05D005096 1.8e-168 595.9 314 92.0
Lalb_Chr19g0126281 Lupinus albus HOM05D003935 ORTHO05D005096 2.4e-168 595.5 315 91.1
Glyma.09G231000 Glycine max HOM05D003935 ORTHO05D005096 3.4e-167 591.7 315 90.5
Potri.001G126500 Populus trichocarpa HOM05D003935 ORTHO05D005096 7.6e-167 590.5 316 91.8
Hma1.2p1_1132F.1_g260170 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 1.3e-166 589.7 315 91.4
Hma1.2p1_0432F.1_g151940 Hydrangea macrophylla HOM05D003935 ORTHO05D005096 2.2e-166 589.0 315 91.1
CANSAT21G2109 Cannabis sativa HOM05D003935 ORTHO05D005096 3.8e-166 588.2 315 90.5
Thecc.01G388100 Theobroma cacao HOM05D003935 ORTHO05D005096 3.8e-166 588.2 315 91.1
CSS0045715 Camellia sinensis var. sinensis HOM05D003935 ORTHO05D005096 1.4e-165 586.3 315 90.8
GSVIVG01018224001 Vitis vinifera HOM05D003935 ORTHO05D005096 1.4e-165 586.3 315 90.5
Migut.F00500 Erythranthe guttata HOM05D003935 ORTHO05D005096 3.2e-165 585.1 315 89.8
Actinidia01047 Actinidia chinensis HOM05D003935 ORTHO05D005096 4.2e-165 584.7 315 89.5
vmacro09915 Vaccinium macrocarpon HOM05D003935 ORTHO05D005096 4.2e-165 584.7 315 90.5
Lalb_Chr01g0000281 Lupinus albus HOM05D003935 ORTHO05D005096 7.1e-165 583.9 315 90.5
Thhalv10004633m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 9.3e-165 583.6 316 90.2
Aqoxy7G00829 Aquilegia oxysepala HOM05D003935 ORTHO05D005096 1.2e-164 583.2 315 88.9
AL8G38190 Arabidopsis lyrata HOM05D003935 ORTHO05D005096 1.2e-164 583.2 315 88.9
Carub.0008s2219 Capsella rubella HOM05D003935 ORTHO05D005096 1.6e-164 582.8 315 89.2
Duzib133G0969 Durio zibethinus HOM05D003935 ORTHO05D005096 1.6e-164 582.8 316 91.1
Glyma.12G005700 Glycine max HOM05D003935 ORTHO05D005096 1.6e-164 582.8 315 90.2
Atru.chr1.845 Acer truncatum HOM05D003935 ORTHO05D005096 2.7e-164 582.0 313 90.1
Cpa.g.sc16.168 Carica papaya HOM05D003935 ORTHO05D005096 3.5e-164 581.6 315 90.2
CARHR275270 Cardamine hirsuta HOM05D003935 ORTHO05D005096 4.6e-164 581.3 315 88.9
COL.COLO4_12445 Corchorus olitorius HOM05D003935 ORTHO05D005096 7.9e-164 580.5 315 89.8
Potri.003G107000 Populus trichocarpa HOM05D003935 ORTHO05D005096 7.9e-164 580.5 317 90.5
SGA_v2.0_scaffold44G16558 Striga asiatica HOM05D003935 ORTHO05D005096 7.9e-164 580.5 313 88.8
MSTRG.27208 Avicennia marina HOM05D003935 ORTHO05D005096 1.0e-163 580.1 315 89.5
Rhsim09G0190400 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.0e-163 580.1 330 86.7
Sp2g24700 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.3e-163 579.7 315 88.9
AT5G61500 Arabidopsis thaliana HOM05D003935 ORTHO05D005096 1.8e-163 579.3 315 88.6
THA.LOC104819415 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 1.8e-163 579.3 314 89.8
Sopen06g010820 Solanum pennellii HOM05D003935 ORTHO05D005096 2.3e-163 578.9 315 90.5
Oeu031400.2 Olea europaea HOM05D003935 ORTHO05D005096 5.1e-163 577.8 316 88.3
Solyc06g034160.3 Solanum lycopersicum HOM05D003935 ORTHO05D005096 5.1e-163 577.8 315 90.2
AUR62002246 Chenopodium quinoa HOM05D003935 ORTHO05D005096 6.7e-163 577.4 313 89.8
Gohir.D08G159150 Gossypium hirsutum HOM05D003935 ORTHO05D005096 8.7e-163 577.0 316 90.2
Lj1C977G12 Lonicera japonica HOM05D003935 ORTHO05D005096 8.7e-163 577.0 338 84.6
Gorai.004G165200 Gossypium raimondii HOM05D003935 ORTHO05D005096 1.5e-162 576.2 316 90.2
Psat7g207040 Pisum sativum HOM05D003935 ORTHO05D005096 1.5e-162 576.2 315 89.2
TPR.G3680 Trifolium pratense HOM05D003935 ORTHO05D005096 1.5e-162 576.2 315 89.5
QL02p025668 Quercus lobata HOM05D003935 ORTHO05D005096 2.5e-162 575.5 314 88.9
QL04p034713 Quercus lobata HOM05D003935 ORTHO05D005096 2.5e-162 575.5 315 90.5
Haze_21276 Corylus avellana HOM05D003935 ORTHO05D005096 7.4e-162 573.9 322 87.9
Nitab4.5_0000448g0060 Nicotiana tabacum HOM05D003935 ORTHO05D005096 7.4e-162 573.9 315 89.8
Duzib138G0818 Durio zibethinus HOM05D003935 ORTHO05D005096 1.6e-161 572.8 316 89.9
VMungo1127G0071 Vigna mungo HOM05D003935 ORTHO05D005096 1.6e-161 572.8 315 88.3
CAN.G330.5 Capsicum annuum HOM05D003935 ORTHO05D005096 2.1e-161 572.4 315 89.2
THA.LOC104801570 Tarenaya hassleriana HOM05D003935 ORTHO05D005096 2.1e-161 572.4 315 87.6
BcaC06g33155 Brassica carinata HOM05D003935 ORTHO05D005096 2.8e-161 572.0 315 87.9
Medtr4g036265 Medicago truncatula HOM05D003935 ORTHO05D005096 4.8e-161 571.2 315 88.6
Sabra01G0097600 Salix brachista HOM05D003935 ORTHO05D005096 4.8e-161 571.2 316 88.0
PGSC0003DMG400021594 Solanum tuberosum HOM05D003935 ORTHO05D005096 4.8e-161 571.2 315 89.2
PSO063G2499 Papaver somniferum HOM05D003935 ORTHO05D005096 6.3e-161 570.9 317 88.6
Gohir.A08G137866 Gossypium hirsutum HOM05D003935 ORTHO05D005096 8.2e-161 570.5 316 89.2
Lj3g0013928 Lotus japonicus HOM05D003935 ORTHO05D005096 1.8e-160 569.3 315 87.3
Peaxi162Scf00304g01342 Petunia axillaris HOM05D003935 ORTHO05D005096 1.8e-160 569.3 315 88.6
Gohir.D07G154200 Gossypium hirsutum HOM05D003935 ORTHO05D005096 5.3e-160 567.8 316 88.6
Gorai.001G176400 Gossypium raimondii HOM05D003935 ORTHO05D005096 5.3e-160 567.8 316 88.6
PSO782G0781 Papaver somniferum HOM05D003935 ORTHO05D005096 5.3e-160 567.8 317 88.3
Phvul.011G006500 Phaseolus vulgaris HOM05D003935 ORTHO05D005096 6.9e-160 567.4 315 87.9
CsaV3_6G008640 Cucumis sativus L. HOM05D003935 ORTHO05D005096 2.0e-159 565.8 314 86.9
SalBow1G3743 Salvia bowleyana HOM05D003935 ORTHO05D005096 2.0e-159 565.8 315 86.7
ClCG06G002480 Citrullus lanatus HOM05D003935 ORTHO05D005096 7.6e-159 563.9 314 86.9
Gohir.A07G148000 Gossypium hirsutum HOM05D003935 ORTHO05D005096 7.6e-159 563.9 316 87.7
MELO3C022280.2 Cucumis melo HOM05D003935 ORTHO05D005096 1.0e-158 563.5 314 86.6
MSTRG.8834 Avicennia marina HOM05D003935 ORTHO05D005096 1.3e-158 563.1 315 85.4
Sp6g35250 Schrenkiella parvula HOM05D003935 ORTHO05D005096 1.3e-158 563.1 315 86.3
Thhalv10014155m.g Eutrema salsugineum HOM05D003935 ORTHO05D005096 1.7e-158 562.8 315 86.3
Sed0016106 Sechium edule HOM05D003935 ORTHO05D005096 1.7e-158 562.8 314 86.6
Actinidia13591 Actinidia chinensis HOM05D003935 ORTHO05D005096 5.0e-158 561.2 309 88.7
arahy.Tifrunner.gnm1.ann1.YZL4IN Arachis hypogaea HOM05D003935 ORTHO05D005096 5.0e-158 561.2 314 87.6
CiPaw.14G023500 Carya illinoinensis HOM05D003935 ORTHO05D005096 1.4e-157 559.7 315 87.0
Aa31LG11G1910 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.9e-157 559.3 312 87.2
Nitab4.5_0000262g0090 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.2e-156 556.6 315 88.3
DCAR_020181 Daucus carota HOM05D003935 ORTHO05D005096 2.1e-156 555.8 315 84.8
HanXRQChr15g0485951 Helianthus annuus HOM05D003935 ORTHO05D005096 3.6e-156 555.1 315 83.8
Prupe.2G123000 Prunus persica HOM05D003935 ORTHO05D005096 1.0e-155 553.5 315 86.0
FAN03G1633 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.5e-154 548.9 317 86.4
BolC7t45044H Brassica oleracea HOM05D003935 ORTHO05D005096 3.3e-154 548.5 316 85.1
Cc02_g04470 Coffea canephora HOM05D003935 ORTHO05D005096 3.3e-154 548.5 319 82.8
Sabra03G0073800 Salix brachista HOM05D003935 ORTHO05D005096 3.3e-154 548.5 383 74.7
arahy.Tifrunner.gnm1.ann1.2B4GQV Arachis hypogaea HOM05D003935 ORTHO05D005096 5.7e-154 547.7 309 86.4
FvH4_7g09530 Fragaria vesca HOM05D003935 ORTHO05D005096 7.4e-154 547.4 317 86.1
FAN06G5089 Fragaria x ananassa HOM05D003935 ORTHO05D005096 7.4e-154 547.4 317 86.1
Lsat_1_v5_gn_5_9340 Lactuca sativa HOM05D003935 ORTHO05D005096 7.4e-154 547.4 315 82.9
FAN01G1603 Fragaria x ananassa HOM05D003935 ORTHO05D005096 9.7e-154 547.0 317 85.8
HanXRQChr16g0512861 Helianthus annuus HOM05D003935 ORTHO05D005096 9.7e-154 547.0 315 83.2
FAN06G4162 Fragaria x ananassa HOM05D003935 ORTHO05D005096 1.3e-153 546.6 317 86.1
C07p45210 Brassica napus HOM05D003935 ORTHO05D005096 2.2e-153 545.8 316 84.8
FAN10G2569 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.2e-153 545.8 317 85.8
FAN10G4028 Fragaria x ananassa HOM05D003935 ORTHO05D005096 2.2e-153 545.8 317 85.8
CDE04G2838 Ceratophyllum demersum HOM05D003935 ORTHO05D005096 6.3e-153 544.3 306 86.6
Rhsim03G0165100 Rhododendron simsii HOM05D003935 ORTHO05D005096 6.3e-153 544.3 339 79.4
arahy.Tifrunner.gnm1.ann1.16SP4W Arachis hypogaea HOM05D003935 ORTHO05D005096 1.1e-152 543.5 314 84.7
unitig_37.g12492 Utricularia gibba HOM05D003935 ORTHO05D005096 1.8e-152 542.7 315 85.4
RcHm_v2.0_Chr1g0346321 Rosa chinensis HOM05D003935 ORTHO05D005096 6.9e-152 540.8 317 86.1
MD02G1218100 Malus domestica HOM05D003935 ORTHO05D005096 2.6e-151 538.9 315 85.4
Ciclev10005442m.g Citrus clementina HOM05D003935 ORTHO05D005096 1.0e-150 537.0 322 83.2
BcaB05g21604 Brassica carinata HOM05D003935 ORTHO05D005096 2.9e-150 535.4 317 83.6
arahy.Tifrunner.gnm1.ann1.9TCX0P Arachis hypogaea HOM05D003935 ORTHO05D005096 9.4e-149 530.4 309 84.8
Hund04562 Selenicereus undatus HOM05D003935 ORTHO05D005096 9.4e-149 530.4 310 82.9
EL10Ac3g05885 Beta vulgaris HOM05D003935 ORTHO05D005096 1.8e-147 526.2 285 89.5
BolC2t06285H Brassica oleracea HOM05D003935 ORTHO05D005096 5.1e-147 524.6 318 82.7
CiPaw.07G237000 Carya illinoinensis HOM05D003935 ORTHO05D005096 2.8e-145 518.8 326 79.8
Ah.07g207480 Amaranthus hybridus HOM05D003935 ORTHO05D005096 6.9e-144 514.2 288 87.5
BcaC03g13194 Brassica carinata HOM05D003935 ORTHO05D005096 2.0e-143 512.7 318 81.1
Sc10g0008570 Simmondsia chinensis HOM05D003935 ORTHO05D005096 1.7e-142 509.6 283 86.2
Ca_12623_v3 Cicer arietinum L. HOM05D003935 ORTHO05D005096 3.8e-142 508.4 315 81.3
BraA02t04926Z Brassica rapa HOM05D003935 ORTHO05D005096 8.5e-142 507.3 315 80.6
Mapoly0003s0208 Marchantia polymorpha HOM05D003935 ORTHO05D005096 1.1e-141 506.9 320 77.2
Aa31LG3G18800 Aethionema arabicum HOM05D003935 ORTHO05D005096 1.4e-141 506.5 313 81.2
Nitab4.5_0001267g0110 Nicotiana tabacum HOM05D003935 ORTHO05D005096 1.4e-141 506.5 282 86.9
C02p03220 Brassica napus HOM05D004498 ORTHO05D005300 2.5e-141 505.8 314 80.6
ECA232G4201 Erigeron canadensis HOM05D003935 ORTHO05D005096 2.1e-140 502.7 294 80.3
Haze_02753 Corylus avellana HOM05D003935 ORTHO05D005096 1.4e-139 500.0 463 59.8
BraA03t13837Z Brassica rapa HOM05D003935 ORTHO05D005096 1.8e-139 499.6 315 79.7
A03p47100 Brassica napus HOM05D003935 ORTHO05D005096 5.2e-139 498.0 315 79.4
Pp3c8_11900 Physcomitrium patens HOM05D003935 ORTHO05D005096 6.5e-134 481.1 310 76.1
Lsat_1_v5_gn_9_51820 Lactuca sativa HOM05D003935 ORTHO05D005096 7.2e-133 477.6 313 76.4
Os01g0200000 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 4.5e-127 458.4 318 71.7
Actinidia24986 Actinidia chinensis HOM05D003935 ORTHO05D005096 3.2e-125 452.2 240 90.4
SMO134G0003 Selaginella moellendorffii HOM05D003935 ORTHO05D005096 2.7e-124 449.1 313 68.7
BcaC06g33158 Brassica carinata HOM05D003935 ORTHO05D005096 1.8e-123 446.4 262 84.7
ATR0057G070 Amborella trichopoda HOM05D003935 ORTHO05D005096 2.8e-121 439.1 284 74.6
Zm00001eb391210 Zea mays HOM05D003935 ORTHO05D005096 4.5e-119 431.8 314 68.8
AUR62015457 Chenopodium quinoa HOM05D003935 ORTHO05D005096 6.6e-102 374.8 213 84.5
CBR_g28076 Chara braunii HOM05D003935 ORTHO05D000002 1.3e-86 323.9 252 63.1
Dinv06578 Davidia involucrata HOM05D003935 ORTHO05D005096 8.6e-86 321.2 173 88.4
Nitab4.5_0001358g0020 Nicotiana tabacum HOM05D003935 ORTHO05D005096 8.1e-84 314.7 177 84.7
MD07G1099100 Malus domestica HOM05D003935 ORTHO05D005096 1.3e-81 307.4 192 78.6
Cre02.g102350 Chlamydomonas reinhardtii HOM05D003935 ORTHO05D005096 2.6e-74 283.1 310 49.0
arahy.Tifrunner.gnm1.ann1.VY970J Arachis hypogaea HOM05D003935 ORTHO05D005096 2.9e-73 279.6 166 82.5
MCO14G260 Micromonas commoda HOM05D003935 ORTHO05D005096 1.6e-71 273.9 313 47.9
AagrBONN_evm.TU.Sc2ySwM_369.216 Anthoceros agrestis HOM05D003935 ORTHO05D005096 6.0e-71 271.9 274 54.4
Nn051s41922 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.1e-69 267.7 151 83.4
Nn1g09078 Nelumbo nucifera HOM05D003935 ORTHO05D005096 1.1e-69 267.7 151 83.4
SEGI_20183 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.3e-68 264.2 189 67.7
arahy.Tifrunner.gnm1.ann1.XHAQ77 Arachis hypogaea HOM05D003935 ORTHO05D005096 3.2e-64 249.6 186 70.4
CsaV3_4G004080 Cucumis sativus L. HOM05D003935 ORTHO05D044846 5.6e-61 238.8 277 50.9
Nitab4.5_0001358g0040 Nicotiana tabacum HOM05D003935 ORTHO05D001473 6.9e-59 231.9 112 97.3
PRCOL_00004022 Prasinoderma coloniale HOM05D003935 ORTHO05D005096 1.5e-58 230.7 300 43.3
Haze_27326 Corylus avellana HOM05D003935 ORTHO05D005096 2.1e-55 220.3 308 41.2
Os10g0560450 Oryza sativa ssp. japonica HOM05D003935 ORTHO05D005096 6.0e-55 218.8 185 61.1
Rhsim01G0073400 Rhododendron simsii HOM05D003935 ORTHO05D005096 3.8e-49 199.5 149 69.8
MELO3C032833.2 Cucumis melo HOM05D003935 ORTHO05D044846 6.5e-49 198.7 301 44.9
Rhsim06G0236800 Rhododendron simsii HOM05D003935 ORTHO05D005096 9.3e-48 194.9 142 69.7
Zm00001eb003720 Zea mays HOM05D003935 ORTHO05D005096 5.1e-46 189.1 113 77.0
Zm00001eb078430 Zea mays HOM05D003935 ORTHO05D005096 5.1e-46 189.1 113 77.0
Zm00001eb216570 Zea mays HOM05D003935 ORTHO05D005096 6.7e-46 188.7 129 69.0
Zm00001eb363440 Zea mays HOM05D003935 ORTHO05D005096 4.3e-45 186.0 113 76.1
Rhsim11G0131000 Rhododendron simsii HOM05D003935 ORTHO05D005096 2.2e-44 183.7 179 57.5
SEGI_13739 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 6.3e-44 182.2 103 83.5
BcaB05g21605 Brassica carinata HOM05D003935 ORTHO05D005096 4.1e-43 179.5 137 66.4
AL7G47000 Arabidopsis lyrata HOM05D003935 ORTHO05D003430 7.6e-42 175.3 169 55.6
Rhsim06G0096100 Rhododendron simsii HOM05D003935 ORTHO05D005096 1.5e-37 161.0 116 71.6
Lj2A404G32 Lonicera japonica HOM05D000092 ORTHO05D000042 1.1e-35 154.8 277 35.7
BcaB01g00746 Brassica carinata HOM05D003935 ORTHO05D005096 6.5e-33 145.6 108 66.7
BcaC04g19029 Brassica carinata HOM05D003935 ORTHO05D005096 1.9e-32 144.1 114 66.7
SEGI_32586 Sequoiadendron giganteum HOM05D003935 ORTHO05D005096 1.2e-26 124.8 68 83.8
A09p20840 Brassica napus HOM05D000772 ORTHO05D003239 1.5e-26 124.4 80 77.5
BraA09t37687Z Brassica rapa HOM05D000772 ORTHO05D003239 1.5e-26 124.4 80 77.5
MD07G1099000 Malus domestica HOM05D003935 ORTHO05D005096 3.8e-25 119.8 60 91.7
CBR_g28077 Chara braunii HOM05D003935 ORTHO05D005096 8.8e-22 108.6 72 68.1
Actinidia10778 Actinidia chinensis HOM05D003935 ORTHO05D005096 4.4e-21 106.3 90 64.4
arahy.Tifrunner.gnm1.ann1.W2J7UU Arachis hypogaea HOM05D003935 ORTHO05D023770 8.2e-20 102.1 53 90.6
Lj9A23G20 Lonicera japonica HOM05D000092 ORTHO05D000042 2.4e-19 100.5 117 45.3
C03p26610 Brassica napus HOM05D003935 ORTHO05D023770 4.5e-18 96.3 53 83.0
Rhsim12G0075300 Rhododendron simsii HOM05D016728 ORTHO05D338590 6.5e-17 92.4 102 53.9
SalBow2G0135 Salvia bowleyana HOM05D003935 ORTHO05D357983 1.1e-16 91.7 47 89.4
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 1.2e-15 88.2 52 80.8
BcaC03g17887 Brassica carinata HOM05D003935 ORTHO05D005096 1.3e-09 68.2 44 72.7
Zm00001eb395010 Zea mays HOM05D034860 ORTHO05D442630 2.1e-07 60.8 37 64.9
BcaC02g10492 Brassica carinata HOM05D036142 ORTHO05D023770 1.8e-06 57.8 33 81.8
C04p28240 Brassica napus HOM05D036142 ORTHO05D023770 1.8e-06 57.8 33 81.8
BolC4t24369H Brassica oleracea HOM05D036142 ORTHO05D023770 1.8e-06 57.8 33 81.8
Zm00001eb363380 Zea mays HOM05D003935 ORTHO05D445556 1.8e-06 57.8 37 62.2
Glyma.12G161000 Glycine max HOM05D000557 ORTHO05D212538 6.8e-06 55.8 46 54.3


User provided reference genes

Program Settings