Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI14G0770 Tripterygium wilfordii HOM05D006088 ORTHO05D007281 1.2e-39 166.0 82 100.0
TWI39G0339 Tripterygium wilfordii HOM05D006088 ORTHO05D007281 1.1e-16 89.7 71 67.6
Potri.015G009500 Populus trichocarpa HOM05D006088 ORTHO05D007281 4.2e-16 87.8 71 66.2
Duzib068G0049 Durio zibethinus HOM05D006088 ORTHO05D007281 2.1e-15 85.5 73 60.3
GSVIVG01038590001 Vitis vinifera HOM05D006088 ORTHO05D007281 2.1e-15 85.5 75 61.3
Thecc.03G202800 Theobroma cacao HOM05D006088 ORTHO05D007281 2.7e-15 85.1 73 60.3
Aa31LG11G3620 Aethionema arabicum HOM05D006088 ORTHO05D007281 4.6e-15 84.3 71 63.4
Lj1A1022T49 Lonicera japonica HOM05D006088 ORTHO05D007281 4.6e-15 84.3 73 60.3
AT5G24340 Arabidopsis thaliana HOM05D006088 ORTHO05D007281 6.0e-15 84.0 71 63.4
Gohir.A09G186501 Gossypium hirsutum HOM05D006088 ORTHO05D007281 6.0e-15 84.0 73 57.5
Gohir.D09G180600 Gossypium hirsutum HOM05D006088 ORTHO05D007281 6.0e-15 84.0 73 57.5
Gorai.006G202600 Gossypium raimondii HOM05D006088 ORTHO05D007281 6.0e-15 84.0 73 57.5
Sabra15G0007500 Salix brachista HOM05D006088 ORTHO05D007281 6.0e-15 84.0 71 62.0
MD07G1295100 Malus domestica HOM05D006088 ORTHO05D007281 7.9e-15 83.6 73 60.3
Oeu037044.1 Olea europaea HOM05D006088 ORTHO05D007281 7.9e-15 83.6 73 61.6
Atru.chr12.2268 Acer truncatum HOM05D006088 ORTHO05D007281 1.0e-14 83.2 70 64.3
Atru.chr12.2276 Acer truncatum HOM05D006088 ORTHO05D007281 1.0e-14 83.2 70 64.3
CSS0005298 Camellia sinensis var. sinensis HOM05D006088 ORTHO05D007281 1.3e-14 82.8 73 60.3
CSS0044490 Camellia sinensis var. sinensis HOM05D006088 ORTHO05D007281 1.3e-14 82.8 73 60.3
Manes.01G039200 Manihot esculenta HOM05D006088 ORTHO05D007281 1.3e-14 82.8 71 62.0
Sc25g0000960 Simmondsia chinensis HOM05D006088 ORTHO05D007281 1.3e-14 82.8 73 58.9
Dinv29251 Davidia involucrata HOM05D006088 ORTHO05D007281 1.8e-14 82.4 73 60.3
FvH4_7g32160 Fragaria vesca HOM05D006088 ORTHO05D007281 1.8e-14 82.4 75 58.7
FAN01G2391 Fragaria x ananassa HOM05D006088 ORTHO05D007281 1.8e-14 82.4 75 58.7
FAN03G2371 Fragaria x ananassa HOM05D006088 ORTHO05D007281 1.8e-14 82.4 75 58.7
FAN03G2860 Fragaria x ananassa HOM05D006088 ORTHO05D007281 1.8e-14 82.4 75 58.7
FAN06G1538 Fragaria x ananassa HOM05D006088 ORTHO05D007281 1.8e-14 82.4 75 58.7
FAN10G3213 Fragaria x ananassa HOM05D006088 ORTHO05D007281 1.8e-14 82.4 75 58.7
FAN10G3559 Fragaria x ananassa HOM05D006088 ORTHO05D007281 1.8e-14 82.4 75 58.7
HanXRQChr04g0100451 Helianthus annuus HOM05D006088 ORTHO05D007281 1.8e-14 82.4 74 58.1
RcHm_v2.0_Chr1g0381781 Rosa chinensis HOM05D006088 ORTHO05D007281 1.8e-14 82.4 75 58.7
COL.COLO4_16809 Corchorus olitorius HOM05D006088 ORTHO05D007281 2.3e-14 82.0 73 58.9
ECA238G4490 Erigeron canadensis HOM05D006088 ORTHO05D007281 2.3e-14 82.0 74 58.1
Nn1g00333 Nelumbo nucifera HOM05D006088 ORTHO05D007281 2.3e-14 82.0 73 58.9
Sp2g22980 Schrenkiella parvula HOM05D006088 ORTHO05D007281 2.3e-14 82.0 71 62.0
Sed0011789 Sechium edule HOM05D006088 ORTHO05D007281 2.3e-14 82.0 72 62.5
SGA_v2.0_scaffold44G16827 Striga asiatica HOM05D006088 ORTHO05D007281 2.3e-14 82.0 73 57.5
THA.LOC104814937 Tarenaya hassleriana HOM05D006088 ORTHO05D007281 2.3e-14 82.0 71 62.0
vmacro06403 Vaccinium macrocarpon HOM05D006088 ORTHO05D007281 2.3e-14 82.0 73 60.3
CiPaw.06G044500 Carya illinoinensis HOM05D006088 ORTHO05D007281 3.0e-14 81.6 73 60.3
Rhsim03G0211500 Rhododendron simsii HOM05D006088 ORTHO05D007281 3.0e-14 81.6 71 60.6
BcaB07g29905 Brassica carinata HOM05D006088 ORTHO05D007281 3.9e-14 81.3 71 62.0
arahy.Tifrunner.gnm1.ann1.W8KES2 Arachis hypogaea HOM05D006088 ORTHO05D007281 5.1e-14 80.9 73 58.9
Hma1.2p1_0707F.1_g207070 Hydrangea macrophylla HOM05D006088 ORTHO05D007281 5.1e-14 80.9 73 60.3
Nitab4.5_0002780g0060 Nicotiana tabacum HOM05D006088 ORTHO05D007281 5.1e-14 80.9 73 58.9
C02p60380 Brassica napus HOM05D006088 ORTHO05D007281 6.7e-14 80.5 71 62.0
BolC2t12093H Brassica oleracea HOM05D006088 ORTHO05D007281 6.7e-14 80.5 71 62.0
Cpa.g.sc3.114 Carica papaya HOM05D006088 ORTHO05D007281 6.7e-14 80.5 73 60.3
Ciclev10020182m.g Citrus clementina HOM05D006088 ORTHO05D007281 6.7e-14 80.5 71 60.6
Peaxi162Scf00740g00327 Petunia axillaris HOM05D006088 ORTHO05D007281 6.7e-14 80.5 73 56.2
Hund21022 Selenicereus undatus HOM05D006088 ORTHO05D007281 6.7e-14 80.5 75 58.7
TAR629G2736 Trochodendron aralioides HOM05D006088 ORTHO05D007281 6.7e-14 80.5 73 60.3
Actinidia34240 Actinidia chinensis HOM05D006088 ORTHO05D007281 8.7e-14 80.1 73 58.9
Carub.0006s2216 Capsella rubella HOM05D006088 ORTHO05D007281 8.7e-14 80.1 71 62.0
Prupe.2G314700 Prunus persica HOM05D006088 ORTHO05D007281 8.7e-14 80.1 73 58.9
CAN.G481.44 Capsicum annuum HOM05D006088 ORTHO05D007281 1.1e-13 79.7 73 58.9
CARHR189110 Cardamine hirsuta HOM05D006088 ORTHO05D007281 1.1e-13 79.7 71 60.6
Thhalv10004042m.g Eutrema salsugineum HOM05D006088 ORTHO05D007281 1.1e-13 79.7 71 60.6
Psat6g035960 Pisum sativum HOM05D006088 ORTHO05D007281 1.1e-13 79.7 72 58.3
AL6G35860 Arabidopsis lyrata HOM05D006088 ORTHO05D007281 1.5e-13 79.3 68 61.8
CsaV3_3G019690 Cucumis sativus L. HOM05D006088 ORTHO05D007281 1.5e-13 79.3 71 59.2
Migut.F00188 Erythranthe guttata HOM05D006088 ORTHO05D007281 1.5e-13 79.3 72 59.7
PGR042G2967 Punica granatum HOM05D006088 ORTHO05D007281 1.5e-13 79.3 75 58.7
Zm00001eb096690 Zea mays HOM05D006088 ORTHO05D007281 1.5e-13 79.3 73 56.2
BcaC03g17984 Brassica carinata HOM05D006088 ORTHO05D007281 1.9e-13 79.0 71 60.6
BcaC03g17985 Brassica carinata HOM05D006088 ORTHO05D007281 1.9e-13 79.0 71 60.6
BcaC03g17987 Brassica carinata HOM05D006088 ORTHO05D007281 1.9e-13 79.0 71 60.6
A02p40650 Brassica napus HOM05D006088 ORTHO05D007281 1.9e-13 79.0 71 60.6
BraA02t09012Z Brassica rapa HOM05D006088 ORTHO05D007281 1.9e-13 79.0 71 60.6
Lj5g0026434 Lotus japonicus HOM05D006088 ORTHO05D007281 1.9e-13 79.0 71 60.6
TPR.G24535 Trifolium pratense HOM05D006088 ORTHO05D007281 1.9e-13 79.0 72 56.9
DCAR_014551 Daucus carota HOM05D006088 ORTHO05D007281 2.5e-13 78.6 77 55.8
Solyc03g082850.3 Solanum lycopersicum HOM05D006088 ORTHO05D007281 2.5e-13 78.6 70 60.0
Sopen03g022590 Solanum pennellii HOM05D006088 ORTHO05D007281 2.5e-13 78.6 70 60.0
arahy.Tifrunner.gnm1.ann1.F1TPPK Arachis hypogaea HOM05D006088 ORTHO05D007281 3.3e-13 78.2 76 57.9
EL10Ac3g05241 Beta vulgaris HOM05D006088 ORTHO05D007281 3.3e-13 78.2 69 60.9
AUR62035569 Chenopodium quinoa HOM05D006088 ORTHO05D007281 3.3e-13 78.2 70 60.0
Ca_12770_v3 Cicer arietinum L. HOM05D006088 ORTHO05D007281 3.3e-13 78.2 78 55.1
Eucgr.A01442 Eucalyptus grandis HOM05D006088 ORTHO05D007281 3.3e-13 78.2 72 58.3
MBI12_g21748_MAGBIO Magnolia biondii HOM05D006088 ORTHO05D007281 3.3e-13 78.2 72 56.9
MELO3C019378.2 Cucumis melo HOM05D006088 ORTHO05D007281 4.3e-13 77.8 71 57.7
PSO063G3091 Papaver somniferum HOM05D006088 ORTHO05D007281 4.3e-13 77.8 71 57.7
CANSAT21G0843 Cannabis sativa HOM05D006088 ORTHO05D007281 7.4e-13 77.0 71 57.7
A02p40510 Brassica napus HOM05D006088 ORTHO05D007281 9.6e-13 76.6 70 58.6
Lalb_Chr04g0253281 Lupinus albus HOM05D006088 ORTHO05D007281 9.6e-13 76.6 71 57.7
QL09p007776 Quercus lobata HOM05D006088 ORTHO05D007281 9.6e-13 76.6 73 57.5
PGSC0003DMG400018542 Solanum tuberosum HOM05D006088 ORTHO05D007281 9.6e-13 76.6 70 58.6
unitig_52.g17713 Utricularia gibba HOM05D006088 ORTHO05D007281 1.6e-12 75.9 71 57.7
A02p40610 Brassica napus HOM05D006088 ORTHO05D007281 2.1e-12 75.5 70 57.1
Cc02_g01220 Coffea canephora HOM05D006088 ORTHO05D007281 2.1e-12 75.5 70 58.6
SalBow4G2097 Salvia bowleyana HOM05D006088 ORTHO05D007281 2.1e-12 75.5 72 55.6
AUR62006059 Chenopodium quinoa HOM05D006088 ORTHO05D007281 3.7e-12 74.7 70 57.1
Os07g0452400 Oryza sativa ssp. japonica HOM05D006088 ORTHO05D007281 3.7e-12 74.7 72 54.2
HPP92_025612 Vanilla planifolia HOM05D006088 ORTHO05D007281 3.7e-12 74.7 72 52.8
DCAR_010586 Daucus carota HOM05D006088 ORTHO05D007281 4.8e-12 74.3 71 57.7
Glyma.13G078800 Glycine max HOM05D006088 ORTHO05D007281 6.2e-12 73.9 72 54.2
Glyma.14G150400 Glycine max HOM05D006088 ORTHO05D007281 1.4e-11 72.8 72 52.8
Phvul.001G074500 Phaseolus vulgaris HOM05D006088 ORTHO05D007281 1.4e-11 72.8 70 55.7
vmacro06404 Vaccinium macrocarpon HOM05D006088 ORTHO05D007281 1.4e-11 72.8 107 42.1
SMO266G0077 Selaginella moellendorffii HOM05D006088 ORTHO05D007281 1.8e-11 72.4 72 54.2
MSTRG.27009 Avicennia marina HOM05D006088 ORTHO05D007281 3.1e-11 71.6 72 56.9
Aqoxy5G04265 Aquilegia oxysepala HOM05D006088 ORTHO05D007281 5.3e-11 70.9 71 52.1
Pp3c11_25950 Physcomitrium patens HOM05D006088 ORTHO05D007281 1.5e-10 69.3 73 49.3
AagrBONN_evm.TU.Sc2ySwM_117.2926 Anthoceros agrestis HOM05D006088 ORTHO05D007281 2.6e-10 68.6 71 52.1
ATR0757G203 Amborella trichopoda HOM05D006088 ORTHO05D007281 7.6e-10 67.0 70 52.9
Mapoly0133s0016 Marchantia polymorpha HOM05D006088 ORTHO05D007281 2.2e-09 65.5 71 50.7
CDE11G0933 Ceratophyllum demersum HOM05D006088 ORTHO05D007281 2.5e-08 62.0 57 54.4
CBR_g51519 Chara braunii HOM05D000019 ORTHO05D000353 7.1e-08 60.5 73 45.2
Hma1.2p1_0707F.1_g207060 Hydrangea macrophylla HOM05D006088 ORTHO05D007281 1.0e-06 56.6 54 53.7
arahy.Tifrunner.gnm1.ann1.IYG6N7 Arachis hypogaea HOM05D006088 ORTHO05D007281 3.0e-06 55.1 52 59.6


User provided reference genes

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