Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 2455.2 1264 100.0
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 2210.6 1266 90.3
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1862.4 1258 75.4
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1856.6 1271 75.8
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1855.5 1260 76.1
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1840.5 1275 74.3
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1839.7 1254 75.1
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1838.2 1265 75.4
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1835.1 1266 74.9
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1834.7 1275 73.8
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1833.5 1255 74.6
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1826.6 1259 74.1
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1826.6 1277 74.2
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1816.2 1260 74.7
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1812.7 1280 73.0
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1810.8 1280 72.7
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1810.0 1263 73.5
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1805.8 1280 72.5
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1805.8 1275 72.9
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1795.8 1320 71.7
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1794.6 1297 71.5
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1789.6 1264 72.9
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1777.3 1271 71.8
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1759.2 1261 71.4
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1758.8 1274 71.1
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1755.7 1259 72.0
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1753.4 1264 71.4
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1752.3 1275 71.3
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1750.3 1277 70.6
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1749.6 1262 71.5
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1747.3 1261 71.3
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1741.9 1268 71.1
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1738.4 1267 71.8
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1737.6 1276 70.5
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1732.2 1281 69.6
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1726.1 1257 70.2
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1724.9 1274 69.7
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1723.4 1275 70.0
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1720.3 1278 69.5
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1719.9 1278 70.7
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1718.0 1273 69.9
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1718.0 1347 67.6
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1715.7 1265 70.1
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1713.7 1276 69.7
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1709.5 1253 70.8
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1708.3 1280 70.5
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1708.3 1294 68.5
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1704.1 1253 70.0
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1696.8 1276 69.1
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1695.6 1269 68.6
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1687.5 1274 69.5
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1686.0 1257 68.4
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1682.2 1276 69.3
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1680.6 1273 69.4
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1679.1 1273 69.0
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1678.3 1324 66.7
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1675.2 1277 68.0
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1674.1 1253 68.7
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1669.1 1257 68.5
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1664.8 1262 68.4
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1662.9 1275 68.3
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1660.6 1277 68.4
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1660.2 1275 68.4
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1660.2 1261 67.6
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1658.7 1322 66.3
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1656.3 1275 67.8
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1654.4 1185 71.5
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1653.6 1272 66.8
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1652.9 1267 68.9
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1646.3 1268 67.4
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1639.0 1311 66.7
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1634.4 1248 69.1
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1630.9 1261 66.9
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1627.1 1273 68.0
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1619.8 1184 70.8
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1615.1 1277 67.0
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1614.0 1277 67.0
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1605.1 1276 66.5
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1604.0 1276 66.5
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1602.0 1177 71.5
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1593.9 1269 66.8
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1578.9 1277 66.2
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 1567.4 1259 65.1
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1564.7 1311 63.6
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1535.4 1264 64.2
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1534.2 1187 66.1
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1520.8 1206 66.5
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1503.8 1022 74.4
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1491.1 1166 66.1
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1477.2 1009 75.0
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1468.8 1253 62.3
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1458.0 1287 60.1
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1449.1 1252 59.6
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1414.1 1252 60.4
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1410.6 1243 59.7
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1280.4 1041 64.7
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1207.6 1268 54.8
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 0.0e+00 1176.0 886 68.1
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1125.2 1268 48.8
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 0.0e+00 1122.1 887 66.3
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1119.8 1254 49.0
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1108.2 968 59.5
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1105.1 959 62.7
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 3.0e-299 1032.3 680 78.2
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 3.6e-292 1008.8 794 65.2
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 1.9e-285 986.5 1198 45.8
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 4.0e-283 978.8 819 63.2
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 3.3e-261 906.0 1219 44.2
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 1.8e-222 777.3 1333 38.3
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 3.9e-222 776.2 556 72.8
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.7e-188 664.5 472 73.1
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 1.4e-187 661.4 1403 34.7
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 1.6e-186 657.9 621 58.8
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 1.5e-181 641.3 600 56.5
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 3.6e-175 620.2 1279 33.2
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 8.9e-174 615.5 492 65.9
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 6.2e-151 539.7 654 48.6
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 6.9e-134 483.0 266 92.5
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 6.9e-134 483.0 266 92.5
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.3e-129 468.0 329 69.9
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 8.7e-129 466.1 1159 31.4
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 3.4e-125 454.1 694 43.8
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 2.3e-121 441.4 276 80.4
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 7.9e-98 363.2 246 78.5
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 1.6e-93 349.0 239 76.6
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 4.0e-89 334.3 340 51.2
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 6.7e-89 333.6 174 98.9
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 2.4e-78 298.5 200 75.0
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.5e-72 279.3 248 59.3
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 7.5e-64 250.4 207 63.8
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 9.8e-56 223.4 161 71.4
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 4.3e-43 181.4 161 61.5
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 5.2e-41 174.5 104 77.9
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 1.2e-37 163.3 134 67.2
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 6.6e-36 157.5 113 76.1
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 3.4e-32 145.2 1257 21.9
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 7.6e-32 144.1 112 68.8
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 1.7e-28 132.9 225 40.0
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 6.7e-20 104.4 153 38.6
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 9.6e-19 100.5 157 40.1
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 1.3e-18 100.1 115 44.3
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 2.8e-18 99.0 96 52.1
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 3.7e-18 98.6 115 43.5
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 1.8e-17 96.3 62 74.2
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 2.0e-16 92.8 164 38.4
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 1.4e-14 86.7 122 43.4
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 7.9e-13 80.9 54 79.6
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 7.9e-13 80.9 120 43.3
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 1.3e-12 80.1 91 48.4
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 1.1e-11 77.0 122 38.5
SHI33404 Sapria himalayana HOM05D004478 ORTHO05D000002 1.6e-10 73.2 79 48.1
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 3.7e-10 72.0 157 36.3
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 1.4e-09 70.1 63 61.9
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 2.0e-08 66.2 47 72.3
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 4.9e-07 61.6 271 25.5
AagrBONN_evm.TU.Sc2ySwM_228.35 Anthoceros agrestis HOM05D004478 ORTHO05D072883 1.9e-06 59.7 94 40.4
Gohir.A04G047850 Gossypium hirsutum HOM05D004478 ORTHO05D016211 7.1e-06 57.8 54 57.4


User provided reference genes

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