Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 0.0e+00 2026.1 1175 100.0
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 0.0e+00 1529.6 1225 76.8
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 0.0e+00 1443.7 1227 73.4
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 1.7e-227 793.9 1271 50.0
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 6.4e-227 792.0 1226 49.9
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 3.3e-223 779.6 1219 49.1
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 6.5e-219 765.4 1271 46.8
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 1.9e-218 763.8 1281 47.8
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 6.0e-217 758.8 1231 43.9
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 3.0e-216 756.5 1247 48.4
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 1.1e-215 754.6 1279 47.3
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 7.4e-215 751.9 1251 45.4
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 4.8e-206 722.6 1307 46.4
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 7.7e-204 715.3 1277 47.1
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 7.7e-204 715.3 1346 46.0
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 6.5e-203 712.2 1260 46.7
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 1.1e-202 711.4 1238 46.6
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 1.5e-199 701.0 1278 45.8
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 4.3e-199 699.5 1249 46.0
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 6.3e-198 695.7 1214 45.0
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.1e-197 694.9 1257 45.4
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 6.9e-197 692.2 1268 45.3
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.6e-191 673.7 1222 44.8
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 9.7e-191 671.8 1033 49.3
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 3.8e-187 659.8 1281 46.2
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.1e-183 648.3 1206 44.9
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.3e-182 644.8 1274 44.0
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 1.7e-182 644.4 853 48.3
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 5.0e-179 632.9 1262 43.6
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 3.7e-174 616.7 1273 44.5
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 6.3e-174 615.9 1271 42.2
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 1.3e-171 608.2 1272 43.2
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 2.2e-171 607.4 1231 44.3
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.5e-170 602.8 1273 45.1
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.1e-169 600.9 1273 45.0
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 1.7e-166 591.3 1243 40.5
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 6.3e-166 589.3 1072 42.4
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.3e-166 589.0 1269 41.6
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 1.3e-163 581.6 1288 40.3
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 3.3e-162 577.0 1240 42.4
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.1e-161 574.3 1269 43.3
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 8.9e-160 568.9 1328 43.9
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 1.5e-159 568.2 1274 42.2
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 1.6e-156 558.1 1222 39.8
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 1.6e-156 558.1 1235 42.4
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 3.9e-155 553.5 1289 39.8
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 2.0e-151 541.2 1010 47.9
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 9.8e-151 538.9 1236 41.4
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 1.1e-149 535.4 1266 38.9
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.4e-149 534.3 1290 41.2
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 1.5e-146 525.0 1228 40.7
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 1.2e-145 521.9 1219 41.7
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 3.6e-145 520.4 1311 36.7
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 8.1e-145 519.2 1272 40.1
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 8.9e-144 515.8 1225 42.2
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.9e-142 510.0 1264 40.1
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 7.1e-141 506.1 1228 41.1
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 1.0e-139 502.3 1223 41.2
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 1.3e-139 501.9 1232 38.9
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 1.7e-139 501.5 1296 37.4
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 3.3e-138 497.3 1285 38.8
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 9.5e-138 495.7 1053 40.1
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 4.3e-130 470.3 1067 39.2
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.4e-128 465.3 1213 39.4
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.1e-128 464.2 1099 39.9
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 2.9e-126 457.6 1082 37.3
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 7.3e-122 443.0 1120 36.2
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 3.6e-121 440.7 1300 36.8
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 6.9e-120 436.4 1241 39.5
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 1.3e-118 432.2 1061 41.8
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 3.8e-118 430.6 1058 37.2
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 6.4e-118 429.9 1245 39.1
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 1.4e-117 428.7 866 37.8
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.5e-114 418.7 907 35.4
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 2.8e-113 414.5 1279 36.1
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 5.3e-112 410.2 825 36.5
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 1.2e-111 409.1 1284 35.7
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.4e-111 407.5 610 42.6
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 9.3e-109 399.4 977 39.1
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 5.1e-107 393.7 1381 31.0
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 3.7e-105 387.5 1258 32.8
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 2.9e-102 377.9 1044 38.3
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 4.9e-102 377.1 1032 39.5
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 1.4e-101 375.6 1144 33.7
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.9e-98 365.2 998 39.2
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 3.3e-98 364.4 1272 34.9
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.8e-97 361.3 1248 33.4
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 4.1e-96 357.5 1066 34.1
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 9.0e-96 356.3 1054 37.9
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.0e-94 352.8 769 34.3
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.2e-94 351.7 478 45.0
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.1e-92 345.1 840 34.9
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 2.5e-90 338.2 1097 35.9
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 2.8e-89 334.7 1061 32.0
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 6.3e-89 333.6 1386 31.2
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 6.9e-88 330.1 628 38.4
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.5e-87 328.9 1022 34.1
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 7.7e-87 326.6 1081 35.8
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 2.9e-86 324.7 836 34.2
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 2.9e-86 324.7 1026 35.6
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 8.5e-86 323.2 637 37.2
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 5.5e-85 320.5 1379 32.1
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 2.3e-83 315.1 1369 28.8
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.6e-82 311.6 810 34.2
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 5.7e-82 310.5 1436 30.4
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 4.8e-81 307.4 1073 34.5
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 2.0e-79 302.0 960 32.7
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.0e-78 299.7 1132 33.8
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.0e-78 299.7 854 32.0
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 1.0e-78 299.7 460 41.5
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 1.7e-78 298.9 654 36.9
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 6.5e-78 297.0 1071 30.4
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 8.5e-78 296.6 1052 34.6
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 2.5e-77 295.0 1005 35.3
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 3.2e-77 294.7 1132 34.1
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.2e-76 292.7 457 39.8
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 2.7e-76 291.6 610 37.7
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.3e-75 288.5 1191 30.8
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 2.3e-75 288.5 1191 30.8
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 3.9e-75 287.7 1136 33.4
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 1.1e-74 286.2 1397 28.3
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 2.0e-74 285.4 992 37.4
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 2.2e-73 282.0 1006 37.0
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 6.3e-73 280.4 1005 36.8
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 8.2e-73 280.0 631 35.7
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 1.8e-72 278.9 1004 34.6
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 1.3e-70 272.7 1004 34.2
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.1e-68 265.4 984 35.3
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 8.0e-68 263.5 1085 29.3
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.1e-64 253.1 1040 32.4
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 8.5e-62 243.4 1400 27.5
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.5e-61 241.9 733 31.2
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 7.2e-61 240.4 1401 26.3
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 4.5e-55 221.1 1384 28.0
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.2e-50 206.5 829 30.0
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 4.4e-50 204.5 648 31.6
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 2.3e-46 192.2 946 35.0
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 6.6e-46 190.7 1061 29.2
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 7.3e-45 187.2 1112 27.2
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 5.2e-43 181.0 932 34.4
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 3.4e-42 178.3 586 31.2
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 2.3e-38 165.6 1044 25.5
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 6.2e-36 157.5 999 27.0
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 4.4e-34 151.4 519 31.0
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 2.4e-32 145.6 1037 30.3
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 7.0e-32 144.1 1096 27.6
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.6e-31 142.9 641 28.1
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.0e-31 142.5 633 29.5
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 2.7e-31 142.1 1015 30.9
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.0e-30 140.2 506 37.4
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 1.1e-29 136.7 930 25.4
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 5.6e-29 134.4 1004 31.3
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 4.9e-25 121.3 311 31.8
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 8.3e-25 120.6 600 26.2
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 6.6e-22 110.9 210 45.2
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.6e-12 78.6 268 35.4
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.4e-11 75.9 168 32.1
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.4e-11 75.9 168 32.1
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 1.2e-10 73.6 243 27.6
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.7e-09 69.7 620 25.3
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 8.4e-09 67.4 564 25.5
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.9e-08 66.2 303 30.7
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 5.4e-08 64.7 1082 25.2
SHI02386 Sapria himalayana HOM05D003962 ORTHO05D004714 1.6e-07 63.2 89 51.7
unitig_0.g2843 Utricularia gibba HOM05D047057 ORTHO05D004714 2.1e-07 62.8 107 35.5


User provided reference genes

Program Settings