Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 2.2e-93 345.5 165 100.0
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 9.2e-63 243.8 163 73.6
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 1.0e-61 240.4 165 71.5
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 1.5e-60 236.5 162 73.5
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 7.3e-60 234.2 144 75.0
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 7.3e-60 234.2 147 77.6
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 3.6e-59 231.9 144 74.3
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 3.6e-59 231.9 146 72.6
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 8.0e-59 230.7 143 74.8
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 1.8e-58 229.6 123 82.9
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 8.9e-58 227.3 119 84.9
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 2.6e-57 225.7 155 70.3
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 2.6e-57 225.7 165 67.3
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 3.4e-57 225.3 165 68.5
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 5.8e-57 224.6 147 74.1
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 7.5e-57 224.2 154 68.2
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 7.5e-57 224.2 132 77.3
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 7.5e-57 224.2 130 77.7
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 9.8e-57 223.8 141 75.2
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 9.8e-57 223.8 145 71.7
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 1.3e-56 223.4 165 65.5
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 1.7e-56 223.0 161 66.5
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.2e-56 222.6 138 75.4
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.2e-56 222.6 149 71.8
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 2.9e-56 222.2 141 75.2
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 6.4e-56 221.1 124 79.8
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 1.9e-55 219.5 141 72.3
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 2.4e-55 219.2 142 70.4
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 1.2e-54 216.9 145 69.0
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 1.2e-54 216.9 157 66.9
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 1.6e-54 216.5 144 71.5
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 2.0e-54 216.1 134 73.1
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 2.0e-54 216.1 156 68.6
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.7e-54 215.7 150 69.3
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 2.7e-54 215.7 152 69.1
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 3.5e-54 215.3 133 74.4
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 3.5e-54 215.3 148 67.6
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 4.6e-54 214.9 148 66.9
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 4.6e-54 214.9 136 71.3
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 6.0e-54 214.5 136 71.3
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 6.0e-54 214.5 162 64.2
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 7.8e-54 214.2 148 66.9
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 1.3e-53 213.4 137 71.5
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 1.3e-53 213.4 124 77.4
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 2.3e-53 212.6 161 63.4
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 3.0e-53 212.2 131 71.8
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 3.0e-53 212.2 167 64.1
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 3.0e-53 212.2 148 70.9
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 5.0e-53 211.5 143 67.8
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 8.6e-53 210.7 137 71.5
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 8.6e-53 210.7 161 62.1
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 1.5e-52 209.9 133 70.7
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 4.3e-52 208.4 148 66.9
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.3e-52 208.4 142 71.8
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 4.3e-52 208.4 160 62.5
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 7.3e-52 207.6 129 71.3
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 9.5e-52 207.2 119 76.5
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 3.6e-51 205.3 125 71.2
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 6.2e-51 204.5 140 67.1
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 6.2e-51 204.5 146 65.8
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 1.8e-50 203.0 125 72.8
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 1.8e-50 203.0 131 70.2
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 3.1e-50 202.2 142 66.2
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 6.8e-50 201.1 115 76.5
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 8.9e-50 200.7 115 75.7
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 8.9e-50 200.7 128 70.3
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 1.2e-49 200.3 119 70.6
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 1.2e-49 200.3 149 65.1
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 1.5e-49 199.9 141 66.0
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 2.6e-49 199.1 118 72.0
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 2.6e-49 199.1 118 72.0
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 3.4e-49 198.7 115 73.0
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.4e-49 198.7 165 57.0
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 3.4e-49 198.7 135 68.1
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 5.8e-49 198.0 115 73.9
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 5.8e-49 198.0 115 75.7
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 5.8e-49 198.0 115 73.9
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 7.5e-49 197.6 121 74.4
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 7.5e-49 197.6 144 64.6
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 9.8e-49 197.2 115 75.7
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 1.3e-48 196.8 115 74.8
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 1.3e-48 196.8 115 74.8
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 1.3e-48 196.8 143 65.7
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 2.9e-48 195.7 141 63.8
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 3.7e-48 195.3 130 67.7
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 4.9e-48 194.9 115 73.9
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 1.1e-47 193.7 125 68.0
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 1.9e-47 193.0 154 59.1
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 2.4e-47 192.6 127 66.9
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 3.2e-47 192.2 122 67.2
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 4.1e-47 191.8 140 62.1
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 9.2e-47 190.7 118 71.2
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 1.6e-46 189.9 115 72.2
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.7e-46 189.1 132 65.9
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 7.8e-46 187.6 122 66.4
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 1.7e-45 186.4 151 62.9
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 5.1e-45 184.9 137 62.8
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.1e-43 179.5 150 62.0
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 6.2e-43 177.9 162 54.3
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 1.8e-42 176.4 123 65.9
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 4.6e-38 161.8 105 71.4
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 2.6e-33 146.0 117 57.3
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 9.9e-33 144.1 96 66.7
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 2.9e-32 142.5 133 55.6
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 2.4e-31 139.4 116 54.3
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 1.2e-30 137.1 75 80.0
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 1.6e-27 126.7 115 46.1
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 9.0e-26 120.9 90 56.7
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 1.5e-25 120.2 92 59.8
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 2.6e-25 119.4 92 58.7
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 3.4e-25 119.0 74 70.3
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 7.6e-25 117.9 158 44.3
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 1.1e-23 114.0 145 45.5
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 5.4e-23 111.7 73 67.1
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 5.4e-23 111.7 89 50.6
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 5.4e-23 111.7 92 50.0
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 1.6e-22 110.2 73 65.8
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 1.9e-20 103.2 103 47.6
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 8.1e-19 97.8 92 48.9
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 1.4e-18 97.1 100 43.0
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 4.6e-14 82.0 78 51.3
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 3.3e-12 75.9 56 58.9
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 2.8e-11 72.8 60 58.3
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 4.8e-11 72.0 118 35.6
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 6.9e-10 68.2 68 54.4
Cfa004644 Carpinus fangiana HOM05D005641 ORTHO05D002074 8.4e-08 61.2 50 52.0
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 1.9e-07 60.1 63 47.6
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 9.3e-07 57.8 43 62.8
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 1.6e-06 57.0 88 40.9
FAN15G0330 Fragaria x ananassa HOM05D005641 ORTHO05D007953 2.7e-06 56.2 41 48.8
Nitab4.5_0003335g0050 Nicotiana tabacum HOM05D002499 ORTHO05D002812 3.5e-06 55.8 61 34.4


User provided reference genes

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