Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI14G0178 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 0.0e+00 2329.7 1159 100.0
TWI23G0587 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 0.0e+00 1605.1 1142 74.4
Thecc.03G182600 Theobroma cacao HOM05D006627 ORTHO05D007753 3.5e-185 653.3 1225 38.8
Duzib205G1471 Durio zibethinus HOM05D006627 ORTHO05D007753 4.9e-171 606.3 1164 37.6
Duzib084G0535 Durio zibethinus HOM05D006627 ORTHO05D007753 1.3e-163 581.6 1193 36.3
Ciclev10004200m.g Citrus clementina HOM05D006627 ORTHO05D007753 2.7e-153 547.4 1181 37.1
COL.COLO4_28015 Corchorus olitorius HOM05D006627 ORTHO05D007753 1.5e-148 531.6 1136 36.4
Atru.chr1.386 Acer truncatum HOM05D006627 ORTHO05D007753 3.9e-144 516.9 1250 35.8
GSVIVG01028875001 Vitis vinifera HOM05D006627 ORTHO05D007753 3.9e-144 516.9 1201 36.1
Atru.chr1.369 Acer truncatum HOM05D006627 ORTHO05D007753 1.5e-143 515.0 1251 35.6
Atru.ctg97_1.2 Acer truncatum HOM05D006627 ORTHO05D007753 1.5e-143 515.0 1251 35.6
Sabra04G0052500 Salix brachista HOM05D006627 ORTHO05D007753 3.7e-142 510.4 1200 36.4
Potri.004G079000 Populus trichocarpa HOM05D006627 ORTHO05D007753 1.4e-141 508.4 1274 35.2
Prupe.2G299600 Prunus persica HOM05D006627 ORTHO05D007753 2.0e-140 504.6 1228 33.9
MD07G1277900 Malus domestica HOM05D006627 ORTHO05D007753 1.7e-139 501.5 1216 34.5
Potri.017G142600 Populus trichocarpa HOM05D006627 ORTHO05D007753 1.8e-136 491.5 1165 36.1
Gohir.D10G247200 Gossypium hirsutum HOM05D006627 ORTHO05D007753 9.1e-133 479.2 1101 35.4
Gorai.011G285600 Gossypium raimondii HOM05D006627 ORTHO05D007753 4.5e-132 476.9 1102 35.4
MD01G1207000 Malus domestica HOM05D006627 ORTHO05D007753 1.0e-131 475.7 1315 32.0
Gohir.A10G234800 Gossypium hirsutum HOM05D006627 ORTHO05D007753 6.5e-131 473.0 1104 35.2
Sabra17G0119400 Salix brachista HOM05D001410 ORTHO05D006840 1.7e-123 448.4 1181 35.6
Haze_00034 Corylus avellana HOM05D006627 ORTHO05D007753 6.1e-121 439.9 1160 33.3
Dinv28394 Davidia involucrata HOM05D006627 ORTHO05D007753 3.1e-117 427.6 1172 33.5
Cpa.g.sc107.97 Carica papaya HOM05D006627 ORTHO05D007753 1.3e-115 422.2 1106 33.1
FAN01G2627 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.3e-114 417.2 1200 33.0
FAN03G3330 Fragaria x ananassa HOM05D006627 ORTHO05D007753 5.6e-114 416.8 1203 33.2
RcHm_v2.0_Chr1g0378101 Rosa chinensis HOM05D006627 ORTHO05D007753 9.5e-114 416.0 1224 32.3
FvH4_7g30110 Fragaria vesca HOM05D006627 ORTHO05D007753 8.0e-113 412.9 1205 32.5
FAN06G3118 Fragaria x ananassa HOM05D006627 ORTHO05D007753 1.4e-112 412.1 1207 32.3
FAN10G1026 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.0e-112 411.0 1210 33.6
FAN03G1328 Fragaria x ananassa HOM05D006627 ORTHO05D007753 2.0e-111 408.3 1204 33.1
FAN10G1355 Fragaria x ananassa HOM05D006627 ORTHO05D007753 4.4e-111 407.1 1213 32.5
FAN06G3804 Fragaria x ananassa HOM05D006627 ORTHO05D007753 3.7e-110 404.1 1199 32.6
TAR629G2332 Trochodendron aralioides HOM05D006627 ORTHO05D007753 1.1e-101 375.9 1417 30.3
TAR375G0196 Trochodendron aralioides HOM05D006627 ORTHO05D007753 4.3e-98 364.0 1392 29.4
Lj1C1004T5 Lonicera japonica HOM05D006627 ORTHO05D007753 2.7e-92 344.7 1262 29.2
Actinidia34148 Actinidia chinensis HOM05D001410 ORTHO05D007753 7.1e-85 320.1 1135 29.9
Nn1g01607 Nelumbo nucifera HOM05D006627 ORTHO05D007753 6.0e-84 317.0 1397 28.6
DCAR_020266 Daucus carota HOM05D006627 ORTHO05D007753 8.7e-75 286.6 1235 27.9
Oeu060456.3 Olea europaea HOM05D006627 ORTHO05D007753 1.9e-74 285.4 1181 29.0
TAR374G1318 Trochodendron aralioides HOM05D006627 ORTHO05D007753 9.6e-74 283.1 1261 28.9
Actinidia03134 Actinidia chinensis HOM05D006627 ORTHO05D007753 8.1e-73 280.0 1173 28.9
Peaxi162Scf00444g00008 Petunia axillaris HOM05D006627 ORTHO05D007753 1.2e-71 276.2 1170 27.9
Nn1g01606 Nelumbo nucifera HOM05D006627 ORTHO05D007753 6.4e-70 270.4 1394 27.2
Rhsim07G0129200 Rhododendron simsii HOM05D006627 ORTHO05D007753 1.6e-68 265.8 1156 29.4
Rhsim03G0190100 Rhododendron simsii HOM05D006627 ORTHO05D007753 3.5e-68 264.6 1144 28.3
Dinv38916 Davidia involucrata HOM05D006627 ORTHO05D007753 4.3e-66 257.7 1367 27.5
Cc02_g02490 Coffea canephora HOM05D006627 ORTHO05D007753 8.1e-65 253.4 1254 26.1
PSO782G1175 Papaver somniferum HOM05D006627 ORTHO05D007753 2.6e-63 248.4 1220 27.0
vmacro06637 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 3.4e-63 248.1 1156 28.2
PSO478G1013 Papaver somniferum HOM05D006627 ORTHO05D007753 1.3e-62 246.1 1226 27.1
Rhsim07G0129400 Rhododendron simsii HOM05D006627 ORTHO05D007753 3.8e-62 244.6 1144 27.6
CSS0035854 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 6.4e-62 243.8 1053 28.4
CSS0044230 Camellia sinensis var. sinensis HOM05D006627 ORTHO05D007753 6.4e-62 243.8 1053 28.4
vmacro06638 Vaccinium macrocarpon HOM05D006627 ORTHO05D007753 1.4e-61 242.7 1149 26.9
MBI04_g35056_MAGBIO Magnolia biondii HOM05D006627 ORTHO05D007753 2.1e-60 238.8 1459 26.1
GSVIVG01019397001 Vitis vinifera HOM05D006627 ORTHO05D007753 2.1e-60 238.8 1268 27.7
SalBow4G0794 Salvia bowleyana HOM05D006627 ORTHO05D007753 1.8e-59 235.7 1166 27.3
Actinidia28362 Actinidia chinensis HOM05D006627 ORTHO05D007753 5.3e-56 224.2 1284 25.5
QL12p032277 Quercus lobata HOM05D006627 ORTHO05D007753 6.9e-56 223.8 1334 26.5
THA.LOC104800273 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 2.3e-51 208.8 1110 27.7
Aa31LG3G8880 Aethionema arabicum HOM05D008661 ORTHO05D010872 3.0e-51 208.4 1109 27.8
Actinidia31835 Actinidia chinensis HOM05D006627 ORTHO05D007753 1.5e-50 206.1 1096 27.6
MSTRG.27091 Avicennia marina HOM05D006627 ORTHO05D007753 1.6e-49 202.6 1212 26.7
Peaxi162Scf00618g00717 Petunia axillaris HOM05D006627 ORTHO05D007753 8.2e-49 200.3 1197 24.9
Cfa012198 Carpinus fangiana HOM05D006627 ORTHO05D007753 1.1e-48 199.9 1402 25.7
CAN.G236.7 Capsicum annuum HOM05D006627 ORTHO05D007753 2.9e-46 191.8 1126 25.1
PGSC0003DMG400010123 Solanum tuberosum HOM05D006627 ORTHO05D007753 3.8e-46 191.4 1123 24.8
Haze_08819 Corylus avellana HOM05D006627 ORTHO05D007753 5.0e-46 191.0 1393 25.3
AL7G27440 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 2.1e-44 185.7 1101 27.0
MSTRG.8718 Avicennia marina HOM05D006627 ORTHO05D007753 2.7e-44 185.3 1200 26.0
Carub.0007s1533 Capsella rubella HOM05D008661 ORTHO05D010872 4.6e-44 184.5 1103 27.7
Dinv35242 Davidia involucrata HOM05D006627 ORTHO05D007753 1.5e-42 179.5 318 39.3
BcaB03g12481 Brassica carinata HOM05D008661 ORTHO05D010872 1.4e-40 172.9 1103 26.2
CARHR233070 Cardamine hirsuta HOM05D008661 ORTHO05D010872 3.1e-40 171.8 1106 27.7
AUR62031403 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.3e-38 166.4 1351 24.9
Solyc03g025150.4 Solanum lycopersicum HOM05D006627 ORTHO05D007753 2.2e-38 165.6 1107 24.2
Sopen03g004000 Solanum pennellii HOM05D006627 ORTHO05D007753 2.2e-38 165.6 1106 23.3
EL10Ac5g12810 Beta vulgaris HOM05D006627 ORTHO05D007753 2.9e-38 165.2 1164 26.0
DCAR_009389 Daucus carota HOM05D006627 ORTHO05D007753 5.0e-38 164.5 1201 23.8
Dinv35244 Davidia involucrata HOM05D006627 ORTHO05D007753 6.5e-38 164.1 194 50.0
CARHR233080 Cardamine hirsuta HOM05D008661 ORTHO05D010872 1.1e-37 163.3 1115 26.0
Hma1.2p1_0327F.1_g126380 Hydrangea macrophylla HOM05D006627 ORTHO05D007753 2.5e-37 162.2 536 32.3
Manes.02G019000 Manihot esculenta HOM05D006627 ORTHO05D007753 2.1e-36 159.1 1186 25.5
Thhalv10024596m.g Eutrema salsugineum HOM05D008661 ORTHO05D010872 5.1e-35 154.5 501 34.3
Ah.07g196520 Amaranthus hybridus HOM05D006627 ORTHO05D007753 6.7e-35 154.1 1130 27.0
THA.LOC104811963 Tarenaya hassleriana HOM05D008661 ORTHO05D010872 1.1e-34 153.3 1030 26.5
Sp7g23680 Schrenkiella parvula HOM05D008661 ORTHO05D010872 4.1e-32 144.8 1020 25.8
AUR62027265 Chenopodium quinoa HOM05D006627 ORTHO05D007753 5.9e-31 141.0 1186 24.4
HanXRQChr13g0394821 Helianthus annuus HOM05D006627 ORTHO05D007753 2.9e-30 138.7 1186 23.9
EL10Ac5g12809 Beta vulgaris HOM05D006627 ORTHO05D007753 6.5e-30 137.5 1126 25.6
AUR62010719 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.1e-29 136.7 1178 25.1
EL10Ac3g05437 Beta vulgaris HOM05D006627 ORTHO05D007753 2.5e-29 135.6 1337 23.7
Dinv35243 Davidia involucrata HOM05D006627 ORTHO05D007753 3.2e-29 135.2 311 36.7
Dinv37613 Davidia involucrata HOM05D006627 ORTHO05D007753 5.5e-29 134.4 1166 24.1
ECA233G6261 Erigeron canadensis HOM05D006627 ORTHO05D007753 2.1e-28 132.5 1187 23.8
Hund11448 Selenicereus undatus HOM05D006627 ORTHO05D007753 2.7e-28 132.1 1233 24.5
Carub.0238s0001 Capsella rubella HOM05D008661 ORTHO05D010872 1.4e-27 129.8 958 25.8
AUR62027266 Chenopodium quinoa HOM05D006627 ORTHO05D007753 1.8e-27 129.4 1195 24.0
Lsat_1_v5_gn_6_5180 Lactuca sativa HOM05D006627 ORTHO05D007753 5.2e-27 127.9 1188 24.3
BcaB03g12479 Brassica carinata HOM05D008661 ORTHO05D010872 1.1e-26 126.7 538 31.4
C08p09590 Brassica napus HOM05D008661 ORTHO05D010872 9.7e-26 123.6 1084 25.6
BcaC07g38204 Brassica carinata HOM05D008661 ORTHO05D010872 2.8e-25 122.1 1084 25.5
BolC8t48627H Brassica oleracea HOM05D008661 ORTHO05D010872 2.8e-25 122.1 1084 25.5
Sp6g14700 Schrenkiella parvula HOM05D008661 ORTHO05D010872 8.2e-25 120.6 1058 24.2
Ah.07g206700 Amaranthus hybridus HOM05D006627 ORTHO05D007753 5.3e-24 117.9 1387 23.0
Sc22g0005410 Simmondsia chinensis HOM05D006627 ORTHO05D007753 5.3e-24 117.9 1270 24.3
AT5G52530 Arabidopsis thaliana HOM05D008661 ORTHO05D010872 7.0e-24 117.5 591 29.9
AL8G26990 Arabidopsis lyrata HOM05D008661 ORTHO05D010872 2.6e-23 115.5 579 30.6
Carub.0008s1265 Capsella rubella HOM05D008661 ORTHO05D010872 3.5e-23 115.2 583 30.0
BraA08t34056Z Brassica rapa HOM05D008661 ORTHO05D010872 4.5e-23 114.8 525 31.2
A08p21040 Brassica napus HOM05D008661 ORTHO05D010872 2.9e-22 112.1 1085 25.1
ECA232G3189 Erigeron canadensis HOM05D006627 ORTHO05D007753 1.1e-21 110.2 392 27.8
Actinidia14583 Actinidia chinensis HOM05D006627 ORTHO05D007753 9.4e-21 107.1 520 26.0
EL10Ac5g12811 Beta vulgaris HOM05D006627 ORTHO05D007753 6.1e-20 104.4 1325 23.5
TWI60G0847 Tripterygium wilfordii HOM05D006627 ORTHO05D007753 6.7e-19 100.9 1181 25.1
A08p21060 Brassica napus HOM05D008661 ORTHO05D010872 2.8e-17 95.5 419 26.7
Lsat_1_v5_gn_9_57440 Lactuca sativa HOM05D006627 ORTHO05D007753 1.8e-16 92.8 339 28.6
Atru.chr9.2148 Acer truncatum HOM05D006627 ORTHO05D007753 3.5e-15 88.6 188 34.6
Os08g0430000 Oryza sativa ssp. japonica HOM05D006627 ORTHO05D007753 1.3e-14 86.7 343 29.4
HanXRQChr14g0462471 Helianthus annuus HOM05D029832 ORTHO05D007753 4.2e-13 81.6 276 27.2
HanXRQChr09g0252481 Helianthus annuus HOM05D029832 ORTHO05D007753 7.2e-13 80.9 260 31.9
unitig_46.g18802 Utricularia gibba HOM05D006627 ORTHO05D007753 7.2e-13 80.9 1127 24.2
ATR0661G323 Amborella trichopoda HOM05D006627 ORTHO05D007753 2.7e-12 79.0 300 29.7
Migut.F00307 Erythranthe guttata HOM05D006627 ORTHO05D007753 8.0e-12 77.4 1083 21.9
C09p42010 Brassica napus HOM05D008661 ORTHO05D010872 2.3e-11 75.9 313 26.2
BolC9t57083H Brassica oleracea HOM05D008661 ORTHO05D010872 2.3e-11 75.9 313 26.2
BcaC04g20573 Brassica carinata HOM05D008661 ORTHO05D010872 3.0e-11 75.5 313 26.2
CDE04G0350 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 3.0e-11 75.5 1124 22.7
Lsat_1_v5_gn_2_131160 Lactuca sativa HOM05D029832 ORTHO05D007753 5.2e-11 74.7 303 26.4
CDE07G1237 Ceratophyllum demersum HOM05D006627 ORTHO05D007753 2.6e-10 72.4 722 24.5
A10p10120 Brassica napus HOM05D008661 ORTHO05D010872 4.4e-10 71.6 299 24.4
BraA10t43090Z Brassica rapa HOM05D008661 ORTHO05D010872 5.7e-10 71.2 294 24.1
BraA10t43092Z Brassica rapa HOM05D008661 ORTHO05D010872 2.2e-09 69.3 303 24.4
Zm00001eb179470 Zea mays HOM05D006627 ORTHO05D007753 2.8e-09 68.9 189 32.8
BraA10t43093Z Brassica rapa HOM05D008661 ORTHO05D010872 3.1e-08 65.5 148 35.8
C09p42020 Brassica napus HOM05D008661 ORTHO05D010872 4.1e-08 65.1 317 24.3
BolC9t57085H Brassica oleracea HOM05D008661 ORTHO05D010872 4.1e-08 65.1 317 24.3
A10p10130 Brassica napus HOM05D008661 ORTHO05D010872 9.1e-08 63.9 170 33.5
A10p10100 Brassica napus HOM05D008661 ORTHO05D010872 1.2e-07 63.5 162 34.6
BolC9t57086H Brassica oleracea HOM05D008661 ORTHO05D010872 1.2e-07 63.5 146 34.9
BcaC04g20572 Brassica carinata HOM05D008661 ORTHO05D010872 1.6e-07 63.2 306 24.8
BcaB08g35607 Brassica carinata HOM05D008661 ORTHO05D010872 3.5e-07 62.0 315 24.8
C09p42030 Brassica napus HOM05D008661 ORTHO05D010872 3.5e-07 62.0 118 38.1
HPP92_025630 Vanilla planifolia HOM05D006627 ORTHO05D007753 4.5e-07 61.6 1313 21.7
BcaC04g20566 Brassica carinata HOM05D008661 ORTHO05D010872 5.9e-07 61.2 342 23.7
Atru.chr9.2147 Acer truncatum HOM05D006627 ORTHO05D007753 1.7e-06 59.7 941 23.3
BcaC04g20571 Brassica carinata HOM05D008661 ORTHO05D010872 8.6e-06 57.4 193 28.0


User provided reference genes

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