Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI13G0007 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 4.8e-268 927.2 441 100.0
TWI74G0239 Tripterygium wilfordii HOM05D006040 ORTHO05D007134 4.8e-268 927.2 441 100.0
Potri.012G004300 Populus trichocarpa HOM05D006040 ORTHO05D007134 7.7e-157 557.8 450 61.1
QL01p000066 Quercus lobata HOM05D006040 ORTHO05D007134 6.1e-154 548.1 480 57.5
Prupe.2G322500 Prunus persica HOM05D006040 ORTHO05D007134 3.0e-153 545.8 442 60.2
Manes.05G196800 Manihot esculenta HOM05D006040 ORTHO05D007134 2.6e-149 532.7 452 58.4
RcHm_v2.0_Chr1g0383341 Rosa chinensis HOM05D006040 ORTHO05D007134 1.0e-148 530.8 442 57.7
FAN03G3503 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.3e-148 530.4 446 57.8
FvH4_7g32290 Fragaria vesca HOM05D006040 ORTHO05D007134 1.7e-148 530.0 446 58.3
FAN20G2114 Fragaria x ananassa HOM05D006040 ORTHO05D007134 2.9e-148 529.3 446 58.1
FAN10G3876 Fragaria x ananassa HOM05D006040 ORTHO05D007134 5.0e-148 528.5 446 57.0
FAN10G2970 Fragaria x ananassa HOM05D006040 ORTHO05D007134 1.4e-147 526.9 446 57.0
Cfa018660 Carpinus fangiana HOM05D006040 ORTHO05D007134 5.5e-147 525.0 456 57.9
Dinv29187 Davidia involucrata HOM05D006040 ORTHO05D007134 1.2e-146 523.9 462 57.6
MD07G1303900 Malus domestica HOM05D006040 ORTHO05D007134 5.2e-145 518.5 442 58.1
Sabra12G0000200 Salix brachista HOM05D006040 ORTHO05D007134 8.8e-145 517.7 414 61.1
arahy.Tifrunner.gnm1.ann1.53C9AK Arachis hypogaea HOM05D006040 ORTHO05D007134 1.1e-144 517.3 457 56.5
arahy.Tifrunner.gnm1.ann1.QSB9JP Arachis hypogaea HOM05D006040 ORTHO05D007134 2.6e-144 516.2 457 56.2
TAR375G0263 Trochodendron aralioides HOM05D006040 ORTHO05D007134 3.3e-144 515.8 473 56.7
FAN06G3790 Fragaria x ananassa HOM05D006040 ORTHO05D007134 4.4e-144 515.4 443 57.6
Atru.chr12.2497 Acer truncatum HOM05D006040 ORTHO05D007134 3.7e-143 512.3 442 58.4
Atru.chr12.2521 Acer truncatum HOM05D006040 ORTHO05D007134 3.7e-143 512.3 442 58.4
CANSAT21G0186 Cannabis sativa HOM05D006040 ORTHO05D007134 1.6e-141 506.9 443 58.5
Lalb_Chr10g0102951 Lupinus albus HOM05D006040 ORTHO05D007134 1.3e-140 503.8 458 54.8
Sed0006638 Sechium edule HOM05D006040 ORTHO05D007134 7.2e-139 498.0 461 54.7
PGR042G3864 Punica granatum HOM05D006040 ORTHO05D007134 1.0e-137 494.2 455 53.8
Glyma.02G220600 Glycine max HOM05D006040 ORTHO05D007134 5.2e-137 491.9 442 54.3
CsaV3_2G035690 Cucumis sativus L. HOM05D006040 ORTHO05D007134 1.5e-136 490.3 461 55.1
Thecc.03G212500 Theobroma cacao HOM05D006040 ORTHO05D007134 2.0e-136 490.0 438 58.4
Eucgr.A00979 Eucalyptus grandis HOM05D006040 ORTHO05D007134 5.7e-136 488.4 459 54.9
ClCG02G007980 Citrullus lanatus HOM05D006040 ORTHO05D007134 1.3e-135 487.3 459 54.7
Hma1.2p1_1235F.1_g269220 Hydrangea macrophylla HOM05D006040 ORTHO05D007134 2.2e-135 486.5 467 54.2
LjContig00155g0021870 Lotus japonicus HOM05D006040 ORTHO05D007134 2.2e-135 486.5 442 55.9
Medtr5g068730 Medicago truncatula HOM05D006040 ORTHO05D007134 6.3e-135 485.0 443 55.8
Psat2g061600 Pisum sativum HOM05D006040 ORTHO05D007134 6.3e-135 485.0 467 53.1
Ca_05537_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 5.3e-134 481.9 449 55.0
Rhsim09G0211300 Rhododendron simsii HOM05D006040 ORTHO05D007134 7.0e-134 481.5 452 56.4
TPR.G27916 Trifolium pratense HOM05D006040 ORTHO05D007134 3.5e-133 479.2 458 53.7
Actinidia18692 Actinidia chinensis HOM05D006040 ORTHO05D007134 6.5e-132 474.9 455 55.2
Gorai.004G126800 Gossypium raimondii HOM05D006040 ORTHO05D007134 8.5e-132 474.6 441 55.6
GSVIVG01038686001 Vitis vinifera HOM05D006040 ORTHO05D007134 1.5e-131 473.8 455 54.5
MELO3C024776.2 Cucumis melo HOM05D006040 ORTHO05D007134 2.3e-129 466.5 425 56.7
PSO063G2217 Papaver somniferum HOM05D006040 ORTHO05D007134 2.0e-128 463.4 470 51.9
Aqoxy3G00220 Aquilegia oxysepala HOM05D006040 ORTHO05D007134 2.6e-128 463.0 460 53.5
VMungo0647G0797 Vigna mungo HOM05D006040 ORTHO05D007134 4.5e-125 452.2 426 53.1
PSO017G1458 Papaver somniferum HOM05D006040 ORTHO05D007134 5.9e-125 451.8 470 50.9
Lj3C891T14 Lonicera japonica HOM05D006040 ORTHO05D007134 1.0e-124 451.1 414 55.8
Cc02_g00560 Coffea canephora HOM05D006040 ORTHO05D007134 4.2e-123 445.7 457 52.1
Hund21080 Selenicereus undatus HOM05D006040 ORTHO05D007134 1.6e-122 443.7 453 50.3
Cpa.g.sc3.191 Carica papaya HOM05D006040 ORTHO05D007134 4.7e-122 442.2 401 57.9
Lalb_Chr08g0239381 Lupinus albus HOM05D006040 ORTHO05D007134 1.3e-119 434.1 447 52.1
Lj1g0004094 Lotus japonicus HOM05D006040 ORTHO05D007134 3.7e-119 432.6 456 50.9
AUR62005943 Chenopodium quinoa HOM05D006040 ORTHO05D007134 4.9e-119 432.2 453 50.1
SalBow2G1501 Salvia bowleyana HOM05D006040 ORTHO05D007134 1.4e-118 430.6 455 49.9
Os02g0106700 Oryza sativa ssp. japonica HOM05D006040 ORTHO05D007134 1.6e-117 427.2 460 48.3
AUR62028121 Chenopodium quinoa HOM05D006040 ORTHO05D007134 2.7e-117 426.4 453 48.6
Zm00001eb209800 Zea mays HOM05D006040 ORTHO05D007134 5.9e-117 425.2 458 48.5
TPR.G35913 Trifolium pratense HOM05D006040 ORTHO05D007134 3.9e-116 422.5 445 50.8
EL10Ac3g05126 Beta vulgaris HOM05D006040 ORTHO05D007134 5.0e-116 422.2 455 48.8
Zm00001eb229510 Zea mays HOM05D006040 ORTHO05D007134 8.6e-116 421.4 462 48.7
Medtr3g093420 Medicago truncatula HOM05D006040 ORTHO05D007134 1.5e-115 420.6 445 50.3
Nitab4.5_0000115g0200 Nicotiana tabacum HOM05D006040 ORTHO05D007134 2.5e-115 419.9 455 50.3
DCAR_010554 Daucus carota HOM05D006040 ORTHO05D007134 1.2e-114 417.5 449 51.9
PGSC0003DMG400026928 Solanum tuberosum HOM05D006040 ORTHO05D007134 2.3e-113 413.3 454 50.2
MSTRG.18 Avicennia marina HOM05D006040 ORTHO05D007134 8.9e-113 411.4 444 50.2
Sopen06g029320 Solanum pennellii HOM05D006040 ORTHO05D007134 1.5e-112 410.6 460 49.3
Nitab4.5_0003012g0150 Nicotiana tabacum HOM05D006040 ORTHO05D007134 4.4e-112 409.1 496 46.8
Solyc06g072970.3 Solanum lycopersicum HOM05D006040 ORTHO05D007134 5.8e-112 408.7 460 49.3
Phvul.009G040600 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 7.5e-112 408.3 455 48.6
Ca_16841_v3 Cicer arietinum L. HOM05D006040 ORTHO05D007134 2.2e-111 406.8 370 55.1
Glyma.06G139400 Glycine max HOM05D006040 ORTHO05D007134 8.3e-111 404.8 459 47.9
THA.LOC104798996 Tarenaya hassleriana HOM05D006040 ORTHO05D007134 8.3e-111 404.8 447 50.1
Migut.F00965 Erythranthe guttata HOM05D006040 ORTHO05D007134 3.2e-110 402.9 438 48.9
Sc25g0001060 Simmondsia chinensis HOM05D006040 ORTHO05D007134 5.4e-110 402.1 392 52.6
HPP92_012812 Vanilla planifolia HOM05D006040 ORTHO05D007134 1.6e-109 400.6 451 47.2
ATR0579G018 Amborella trichopoda HOM05D006040 ORTHO05D007134 2.0e-109 400.2 441 48.8
SEGI_40721 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 4.6e-109 399.1 472 46.6
SGA_v2.0_scaffold59G20786 Striga asiatica HOM05D006040 ORTHO05D007134 7.8e-109 398.3 446 48.4
Psat5g070440 Pisum sativum HOM05D006040 ORTHO05D007134 5.6e-107 392.1 371 53.4
Thhalv10004343m.g Eutrema salsugineum HOM05D006040 ORTHO05D007134 2.1e-106 390.2 448 48.7
CSS0020482 Camellia sinensis var. sinensis HOM05D006040 ORTHO05D007134 2.8e-106 389.8 374 53.2
HanXRQChr14g0463001 Helianthus annuus HOM05D006040 ORTHO05D007134 3.6e-106 389.4 434 49.5
Gohir.A08G107000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 4.7e-106 389.0 441 49.7
FvH4_7g33360 Fragaria vesca HOM05D006040 ORTHO05D007134 1.4e-105 387.5 301 61.8
Peaxi162Scf00815g00228 Petunia axillaris HOM05D006040 ORTHO05D007134 1.4e-105 387.5 379 52.2
ECA238G4129 Erigeron canadensis HOM05D006040 ORTHO05D007134 1.2e-104 384.4 434 46.5
CAN.G65.140 Capsicum annuum HOM05D006040 ORTHO05D007134 2.6e-104 383.3 370 52.4
Phvul.008G187700 Phaseolus vulgaris HOM05D006040 ORTHO05D007134 1.7e-103 380.6 381 50.7
Sp2g22720 Schrenkiella parvula HOM05D006040 ORTHO05D007134 4.1e-102 375.9 444 47.5
Carub.0006s2254 Capsella rubella HOM05D006040 ORTHO05D007134 7.1e-102 375.2 450 46.2
BraA06t26478Z Brassica rapa HOM05D006040 ORTHO05D007134 9.2e-102 374.8 446 48.4
A06p35530 Brassica napus HOM05D006040 ORTHO05D007134 1.7e-100 370.5 444 48.2
Lsat_1_v5_gn_8_36881 Lactuca sativa HOM05D006040 ORTHO05D007134 3.0e-100 369.8 449 47.4
AT5G24680 Arabidopsis thaliana HOM05D006040 ORTHO05D007134 5.1e-100 369.0 445 46.5
C07p43010 Brassica napus HOM05D006040 ORTHO05D007134 6.2e-98 362.1 447 47.2
BolC7t44830H Brassica oleracea HOM05D006040 ORTHO05D007134 6.2e-98 362.1 444 47.3
AL6G36290 Arabidopsis lyrata HOM05D006040 ORTHO05D007134 9.2e-94 348.2 447 45.9
FAN01G0445 Fragaria x ananassa HOM05D006040 ORTHO05D007134 5.6e-91 339.0 440 43.0
unitig_578.g16670 Utricularia gibba HOM05D006040 ORTHO05D007134 3.6e-90 336.3 365 47.1
Haze_00002 Corylus avellana HOM05D006040 ORTHO05D007134 2.4e-89 333.6 330 52.7
Aa31LG11G3920 Aethionema arabicum HOM05D006040 ORTHO05D007134 9.9e-88 328.2 537 38.4
COL.COLO4_14403 Corchorus olitorius HOM05D002417 ORTHO05D002589 1.3e-87 327.8 338 50.9
Glyma.14G187200 Glycine max HOM05D006040 ORTHO05D007134 3.5e-85 319.7 371 45.8
BcaNung01250 Brassica carinata HOM05D006040 ORTHO05D007134 7.8e-85 318.5 456 42.8
MBI12_g33183_MAGBIO Magnolia biondii HOM05D006040 ORTHO05D007134 1.3e-79 301.2 326 50.9
vmacro10175 Vaccinium macrocarpon HOM05D006040 ORTHO05D007134 3.2e-78 296.6 420 42.4
Duzib068G0842 Durio zibethinus HOM05D006040 ORTHO05D007134 4.6e-77 292.7 272 54.8
Pp3c12_6120 Physcomitrium patens HOM05D006040 ORTHO05D007134 1.5e-75 287.7 436 37.2
Pp3c20_10180 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.5e-75 287.0 405 38.5
Pp3c13_14780 Physcomitrium patens HOM05D006040 ORTHO05D007134 5.6e-75 285.8 434 38.7
Pp3c25_2290 Physcomitrium patens HOM05D006040 ORTHO05D007134 2.0e-72 277.3 424 37.7
Mapoly0044s0025 Marchantia polymorpha HOM05D006040 ORTHO05D007134 6.7e-68 262.3 494 34.2
Mapoly0088s0074 Marchantia polymorpha HOM05D006040 ORTHO05D007134 9.6e-67 258.5 551 31.4
Glyma.04G225400 Glycine max HOM05D006040 ORTHO05D007134 3.1e-65 253.4 351 42.2
CARHR188790 Cardamine hirsuta HOM05D006040 ORTHO05D007134 8.7e-60 235.3 243 50.6
Gohir.D08G118000 Gossypium hirsutum HOM05D006040 ORTHO05D007134 1.5e-59 234.6 381 38.1
VMungo1309G2872 Vigna mungo HOM05D006040 ORTHO05D007134 1.2e-56 224.9 347 39.8
Lalb_Chr14g0364691 Lupinus albus HOM05D006040 ORTHO05D007134 3.2e-54 216.9 200 57.0
MD01G1231800 Malus domestica HOM05D006040 ORTHO05D007134 3.3e-51 206.8 146 65.1
CBR_g29958 Chara braunii HOM05D006040 ORTHO05D007134 1.7e-47 194.5 472 29.0
FvH4_7g33700 Fragaria vesca HOM05D006040 ORTHO05D007134 1.4e-46 191.4 268 39.9
Pp3c23_1100 Physcomitrium patens HOM05D006040 ORTHO05D007134 6.3e-42 176.0 144 52.8
CBR_g3746 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-40 170.2 154 52.6
SEGI_00936 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.0e-39 168.7 146 54.1
SEGI_39404 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 1.9e-38 164.5 153 50.3
SMO347G0626 Selaginella moellendorffii HOM05D006040 ORTHO05D007134 2.5e-30 137.5 218 36.2
MD01G1231900 Malus domestica HOM05D006040 ORTHO05D007134 1.1e-27 128.6 106 58.5
SEGI_38707 Sequoiadendron giganteum HOM05D006040 ORTHO05D007134 8.2e-26 122.5 153 41.2
Oeu063747.1 Olea europaea HOM05D006040 ORTHO05D007134 5.9e-24 116.3 99 56.6
Haze_17391 Corylus avellana HOM05D001765 ORTHO05D005876 9.4e-22 109.0 151 43.0
CDE04G3558 Ceratophyllum demersum HOM05D006040 ORTHO05D007134 2.5e-14 84.3 58 65.5
SalBow2G3456 Salvia bowleyana HOM05D000168 ORTHO05D007134 3.7e-10 70.5 41 73.2
Cre05.g240500 Chlamydomonas reinhardtii HOM05D006040 ORTHO05D007134 1.4e-09 68.6 54 59.3
FvH4_7g33361 Fragaria vesca HOM05D006040 ORTHO05D007134 4.1e-09 67.0 79 41.8
Oeu063748.2 Olea europaea HOM05D003307 ORTHO05D003798 2.7e-08 64.3 52 50.0


User provided reference genes

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