Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI12G1285 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1671.4 842 100.0
TWI56G0898 Tripterygium wilfordii HOM05D003945 ORTHO05D004625 0.0e+00 1569.3 842 93.1
Duzib093G0983 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1395.9 845 83.9
Thecc.08G022100 Theobroma cacao HOM05D003945 ORTHO05D004625 0.0e+00 1394.0 845 83.9
Manes.05G163500 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1385.9 841 84.1
CANSAT25G0653 Cannabis sativa HOM05D003945 ORTHO05D004625 0.0e+00 1383.6 839 82.6
Ciclev10000250m.g Citrus clementina HOM05D003945 ORTHO05D004625 0.0e+00 1382.9 838 84.0
Duzib041G0798 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1380.2 845 83.3
Duzib116G0373 Durio zibethinus HOM05D003945 ORTHO05D004625 0.0e+00 1379.4 845 83.2
QL02p007358 Quercus lobata HOM05D003945 ORTHO05D004625 0.0e+00 1379.0 826 84.1
Potri.002G133300 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1378.6 844 82.0
CsaV3_2G028440 Cucumis sativus L. HOM05D003945 ORTHO05D004625 0.0e+00 1375.5 842 82.9
Gohir.A06G012000 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1372.5 826 84.3
Gohir.D06G009400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1372.5 826 84.0
Gorai.010G012200 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1372.5 826 84.0
Haze_17624 Corylus avellana HOM05D003945 ORTHO05D004625 0.0e+00 1371.3 804 86.1
Cfa018443 Carpinus fangiana HOM05D003945 ORTHO05D004625 0.0e+00 1370.5 847 82.8
arahy.Tifrunner.gnm1.ann1.6F7CQG Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1368.6 838 83.7
CiPaw.15G072600 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1367.4 828 83.3
Potri.014G040800 Populus trichocarpa HOM05D003945 ORTHO05D004625 0.0e+00 1365.1 844 81.6
Gorai.009G205100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1362.8 848 82.0
Sed0019202 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1360.5 836 82.9
Sed0018308 Sechium edule HOM05D003945 ORTHO05D004625 0.0e+00 1359.0 839 82.5
Gohir.D05G199800 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1358.2 840 82.1
GSVIVG01009647001 Vitis vinifera HOM05D003945 ORTHO05D004625 0.0e+00 1357.0 827 83.6
Eucgr.A00488 Eucalyptus grandis HOM05D003945 ORTHO05D004625 0.0e+00 1354.7 835 82.9
Psat5g018920 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1354.0 841 81.6
Sabra02G0104100 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1354.0 845 81.8
Lj5g0000532 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1351.3 788 86.2
FvH4_2g40290 Fragaria vesca HOM05D003945 ORTHO05D004625 0.0e+00 1350.1 840 82.6
Medtr3g111630 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1350.1 806 85.0
Glyma.06G034400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1348.6 845 81.9
Cpa.g.sc64.47 Carica papaya HOM05D003945 ORTHO05D004625 0.0e+00 1348.2 823 83.0
RcHm_v2.0_Chr6g0300451 Rosa chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1345.9 840 82.3
Lalb_Chr14g0369061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1344.7 824 83.4
FAN27G0143 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1343.6 840 82.3
Lj1g0024333 Lotus japonicus HOM05D003945 ORTHO05D004625 0.0e+00 1343.6 835 82.3
Glyma.14G077200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1341.6 845 80.4
Lalb_Chr24g0399061 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1340.9 843 80.7
arahy.Tifrunner.gnm1.ann1.SKM2GN Arachis hypogaea HOM05D003945 ORTHO05D004625 0.0e+00 1340.1 873 75.0
Glyma.04G034200 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1340.1 845 81.9
Prupe.1G383600 Prunus persica HOM05D003945 ORTHO05D004625 0.0e+00 1338.9 849 80.8
Phvul.009G055900 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1336.6 842 81.7
FAN20G0651 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1336.2 840 81.8
Gohir.A05G260400 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1335.9 824 83.0
Manes.18G029900 Manihot esculenta HOM05D003945 ORTHO05D004625 0.0e+00 1335.9 813 82.7
TPR.G12378 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1335.5 847 81.5
CiPaw.16G054000 Carya illinoinensis HOM05D003945 ORTHO05D004625 0.0e+00 1334.7 840 81.3
Nn5g29493 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1330.1 795 83.3
FAN15G1095 Fragaria x ananassa HOM05D003945 ORTHO05D004625 0.0e+00 1328.2 827 82.5
Sabra14G0029800 Salix brachista HOM05D003945 ORTHO05D004625 0.0e+00 1328.2 894 77.0
PGR031G2694 Punica granatum HOM05D003945 ORTHO05D004625 0.0e+00 1327.4 836 81.1
Gorai.009G274100 Gossypium raimondii HOM05D003945 ORTHO05D004625 0.0e+00 1326.6 824 81.4
Gohir.D05G262200 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1325.8 824 81.4
Lalb_Chr22g0355401 Lupinus albus HOM05D003945 ORTHO05D004625 0.0e+00 1325.8 825 81.8
Dinv39382 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1324.3 852 79.6
CSS0008782 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 0.0e+00 1322.8 844 80.0
MD08G1036300 Malus domestica HOM05D003945 ORTHO05D004625 0.0e+00 1320.8 822 81.8
THA.LOC104809128 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1320.8 785 84.2
THA.LOC104806880 Tarenaya hassleriana HOM05D003945 ORTHO05D004625 0.0e+00 1318.5 787 84.2
Aqoxy6G01012 Aquilegia oxysepala HOM05D003945 ORTHO05D004625 0.0e+00 1316.2 822 81.1
Cc10_g03360 Coffea canephora HOM05D003945 ORTHO05D004625 0.0e+00 1315.8 827 80.4
Lj4A44G44 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1315.4 785 83.6
Actinidia22566 Actinidia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1314.7 833 80.2
VMungo0647G1838 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1313.9 829 80.2
TAR381G0557 Trochodendron aralioides HOM05D003945 ORTHO05D004625 0.0e+00 1313.1 823 81.0
VMungo1309G1712 Vigna mungo HOM05D003945 ORTHO05D004625 0.0e+00 1312.4 841 79.4
AUR62033857 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1307.4 843 79.2
PGSC0003DMG400016879 Solanum tuberosum HOM05D003945 ORTHO05D004625 0.0e+00 1307.0 842 78.4
PSO675G7084 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1304.7 824 80.2
PSO541G5148 Papaver somniferum HOM05D003945 ORTHO05D004625 0.0e+00 1303.1 825 80.5
MBI16_g13147_MAGBIO Magnolia biondii HOM05D003945 ORTHO05D004625 0.0e+00 1301.6 825 80.1
Thhalv10022547m.g Eutrema salsugineum HOM05D003945 ORTHO05D004625 0.0e+00 1300.8 850 78.1
Nn1g05109 Nelumbo nucifera HOM05D003945 ORTHO05D004625 0.0e+00 1299.6 847 78.6
Psat6g032680 Pisum sativum HOM05D003945 ORTHO05D004625 0.0e+00 1299.3 825 81.9
Sopen04g033470 Solanum pennellii HOM05D003945 ORTHO05D004625 0.0e+00 1298.9 844 78.8
CAN.G371.130 Capsicum annuum HOM05D003945 ORTHO05D004625 0.0e+00 1298.5 833 79.5
Solyc04g079900.3 Solanum lycopersicum HOM05D003945 ORTHO05D004625 0.0e+00 1298.5 844 78.8
Carub.0008s0641 Capsella rubella HOM05D003945 ORTHO05D004625 0.0e+00 1296.6 823 79.7
CARHR181510 Cardamine hirsuta HOM05D003945 ORTHO05D004625 0.0e+00 1296.2 790 83.4
AUR62041666 Chenopodium quinoa HOM05D003945 ORTHO05D004625 0.0e+00 1294.6 850 78.1
AL8G18650 Arabidopsis lyrata HOM05D003945 ORTHO05D004625 0.0e+00 1292.3 792 83.1
EL10Ac1g01765 Beta vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1291.2 817 79.9
AT5G42620 Arabidopsis thaliana HOM05D003945 ORTHO05D004625 0.0e+00 1290.4 781 83.6
HanXRQChr00c0117g0571731 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1288.5 819 81.3
Nitab4.5_0003588g0030 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1288.5 824 80.5
Lsat_1_v5_gn_1_18561 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1287.7 797 82.2
BcaC06g31752 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 813 81.3
vmacro21611 Vaccinium macrocarpon HOM05D003945 ORTHO05D004625 0.0e+00 1286.9 840 80.8
SalBow8G1011 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1286.6 822 80.0
MELO3C010920.2 Cucumis melo HOM05D003945 ORTHO05D004625 0.0e+00 1286.2 883 74.4
Sp2g07000 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1283.5 848 78.8
SpUn0022_0010 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1283.5 848 78.8
SpUn0026_0070 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1283.5 848 78.8
SpUn0029_0030 Schrenkiella parvula HOM05D003945 ORTHO05D004625 0.0e+00 1283.5 848 78.8
BcaC02g10772 Brassica carinata HOM05D003945 ORTHO05D004625 0.0e+00 1281.2 822 80.0
C04p25260 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1281.2 822 80.0
BolC4t24032H Brassica oleracea HOM05D003945 ORTHO05D004625 0.0e+00 1281.2 822 80.0
Aa31LG9G12670 Aethionema arabicum HOM05D003945 ORTHO05D004625 0.0e+00 1278.5 850 76.2
Nitab4.5_0000110g0200 Nicotiana tabacum HOM05D003945 ORTHO05D004625 0.0e+00 1275.0 810 79.9
MSTRG.24306 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 816 80.1
HanXRQChr04g0104741 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1274.6 786 81.7
A06p48280 Brassica napus HOM05D003945 ORTHO05D004625 0.0e+00 1273.1 845 78.7
Peaxi162Scf00057g01112 Petunia axillaris HOM05D003945 ORTHO05D004625 0.0e+00 1271.9 810 81.9
Ah.11g043210 Amaranthus hybridus HOM05D003945 ORTHO05D004625 0.0e+00 1271.1 784 81.8
BraA06t27697Z Brassica rapa HOM05D003945 ORTHO05D004625 0.0e+00 1271.1 845 78.6
Atru.chr13.549 Acer truncatum HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 882 76.2
CDE07G1908 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1270.4 806 78.4
DCAR_012756 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1265.0 835 76.9
Oeu009604.1 Olea europaea HOM05D003945 ORTHO05D004625 0.0e+00 1265.0 871 75.1
ATR0733G077 Amborella trichopoda HOM05D003945 ORTHO05D004625 0.0e+00 1262.7 789 80.2
CDE04G0514 Ceratophyllum demersum HOM05D003945 ORTHO05D004625 0.0e+00 1259.2 805 77.8
Dinv36042 Davidia involucrata HOM05D003945 ORTHO05D004625 0.0e+00 1258.4 760 85.1
ECA247G1056 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1255.0 792 81.6
Gohir.A05G196700 Gossypium hirsutum HOM05D003945 ORTHO05D004625 0.0e+00 1253.8 819 78.4
DCAR_019505 Daucus carota HOM05D003945 ORTHO05D004625 0.0e+00 1248.0 782 80.1
Glyma.17G248400 Glycine max HOM05D003945 ORTHO05D004625 0.0e+00 1239.9 777 82.0
MSTRG.1299 Avicennia marina HOM05D003945 ORTHO05D004625 0.0e+00 1234.9 780 79.2
Hund17646 Selenicereus undatus HOM05D003945 ORTHO05D004625 0.0e+00 1233.4 803 77.3
HanXRQChr09g0268441 Helianthus annuus HOM05D003945 ORTHO05D004625 0.0e+00 1231.5 782 81.3
Os03g0731500 Oryza sativa ssp. japonica HOM05D003945 ORTHO05D004625 0.0e+00 1223.4 779 78.8
ECA232G0159 Erigeron canadensis HOM05D003945 ORTHO05D004625 0.0e+00 1222.2 785 81.1
SGA_v2.0_scaffold48G18049 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1222.2 824 71.7
Lsat_1_v5_gn_4_119740 Lactuca sativa HOM05D003945 ORTHO05D004625 0.0e+00 1218.4 793 80.3
Ca_13337_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1216.4 845 75.6
Zm00001eb056220 Zea mays HOM05D003945 ORTHO05D004625 0.0e+00 1215.3 818 75.2
Lj4C783T17 Lonicera japonica HOM05D003945 ORTHO05D004625 0.0e+00 1206.8 859 74.5
Medtr1g021950 Medicago truncatula HOM05D003945 ORTHO05D004625 0.0e+00 1205.3 788 77.7
Phvul.001G016500 Phaseolus vulgaris HOM05D003945 ORTHO05D004625 0.0e+00 1202.6 700 85.9
Ca_15527_v3 Cicer arietinum L. HOM05D003945 ORTHO05D004625 0.0e+00 1192.2 791 79.8
Migut.C00687 Erythranthe guttata HOM05D003945 ORTHO05D004625 0.0e+00 1190.3 819 75.3
SalBow8G4281 Salvia bowleyana HOM05D003945 ORTHO05D004625 0.0e+00 1184.1 838 74.0
Sc02g0006540 Simmondsia chinensis HOM05D003945 ORTHO05D004625 0.0e+00 1171.8 726 82.0
SEGI_23274 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1171.4 794 75.2
SGA_v2.0_scaffold24G10266 Striga asiatica HOM05D003945 ORTHO05D004625 0.0e+00 1151.3 848 70.8
Mapoly0001s0355 Marchantia polymorpha HOM05D003945 ORTHO05D004625 0.0e+00 1144.4 784 73.7
SEGI_40605 Sequoiadendron giganteum HOM05D003945 ORTHO05D004625 0.0e+00 1142.5 796 72.7
Rhsim06G0036600 Rhododendron simsii HOM05D003945 ORTHO05D004625 0.0e+00 1130.9 735 81.4
TPR.G15756 Trifolium pratense HOM05D003945 ORTHO05D004625 0.0e+00 1125.5 776 72.9
Pp3c15_10300 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1115.1 793 72.3
Pp3c9_8900 Physcomitrium patens HOM05D003945 ORTHO05D004625 0.0e+00 1112.1 792 72.2
Oeu019083.2 Olea europaea HOM05D003945 ORTHO05D004625 3.6e-296 1021.5 829 67.4
CSS0002441 Camellia sinensis var. sinensis HOM05D003945 ORTHO05D004625 1.3e-282 976.5 588 80.1
AagrBONN_evm.TU.Sc2ySwM_228.1369 Anthoceros agrestis HOM05D003945 ORTHO05D004625 2.6e-270 935.6 626 71.1
TAR625G1327 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.3e-263 912.5 823 63.1
ClCG08G015350 Citrullus lanatus HOM05D003945 ORTHO05D004625 2.0e-262 909.4 542 86.2
COL.COLO4_26375 Corchorus olitorius HOM05D003945 ORTHO05D004625 2.7e-259 899.0 514 85.2
SHI08218 Sapria himalayana HOM05D003945 ORTHO05D004625 3.5e-259 898.7 600 74.0
TAR625G0556 Trochodendron aralioides HOM05D003945 ORTHO05D004625 7.5e-177 625.2 697 53.7
unitig_899.g15618 Utricularia gibba HOM05D003945 ORTHO05D004625 4.4e-145 519.6 433 60.5
Actinidia15302 Actinidia chinensis HOM05D003945 ORTHO05D004625 2.4e-143 513.8 359 81.1
Actinidia15303 Actinidia chinensis HOM05D003945 ORTHO05D004625 1.1e-138 498.4 317 76.0
unitig_899.g15619 Utricularia gibba HOM05D003945 ORTHO05D004625 1.1e-114 418.7 318 76.4
HanXRQChr02g0037151 Helianthus annuus HOM05D003945 ORTHO05D004625 6.0e-102 376.3 264 71.6
TAR625G0675 Trochodendron aralioides HOM05D003945 ORTHO05D004625 3.9e-101 373.6 397 54.7
TAR625G1534 Trochodendron aralioides HOM05D003945 ORTHO05D004625 2.0e-89 334.7 581 46.1
arahy.Tifrunner.gnm1.ann1.URD35Y Arachis hypogaea HOM05D003945 ORTHO05D004625 2.9e-64 251.1 140 85.7
Pp3c1_5980 Physcomitrium patens HOM05D003945 ORTHO05D004625 1.4e-58 232.3 156 75.6
SGA_v2.0_scaffold18G08518 Striga asiatica HOM05D003945 ORTHO05D004625 2.9e-43 181.4 163 56.4
CBR_g2789 Chara braunii HOM05D003945 ORTHO05D004625 2.0e-36 158.7 500 29.8
PRCOL_00003766 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.9e-31 142.1 456 27.6
PRCOL_00006675 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 2.5e-31 141.7 458 28.2
DCAR_031552 Daucus carota HOM05D003945 ORTHO05D004625 3.3e-31 141.4 76 86.8
CiPaw.15G072700 Carya illinoinensis HOM05D003945 ORTHO05D004625 6.4e-27 127.1 68 88.2
Cre01.g001400 Chlamydomonas reinhardtii HOM05D003945 ORTHO05D004625 1.1e-26 126.3 430 27.9
PRCOL_00001495 Prasinoderma coloniale HOM05D003945 ORTHO05D004625 1.4e-26 125.9 470 27.7
TPR.G27891 Trifolium pratense HOM05D003945 ORTHO05D004625 1.9e-26 125.6 68 83.8
Pp3c1_5940 Physcomitrium patens HOM05D003945 ORTHO05D004625 2.1e-25 122.1 96 66.7
TAR625G0971 Trochodendron aralioides HOM05D003945 ORTHO05D004625 1.5e-23 115.9 128 50.8
CBR_g38919 Chara braunii HOM05D000019 ORTHO05D000353 5.1e-16 90.9 220 32.7
CBR_g32472 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-15 89.4 266 27.8
arahy.Tifrunner.gnm1.ann1.4NEG3Q Arachis hypogaea HOM05D003945 ORTHO05D004625 6.2e-14 84.0 86 52.3
SGA_v2.0_scaffold210G42079 Striga asiatica HOM05D003945 ORTHO05D004625 2.6e-12 78.6 131 39.7
CBR_g37162 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-07 63.2 102 38.2
Lsat_1_v5_gn_5_96440 Lactuca sativa HOM05D003945 ORTHO05D004625 2.5e-07 62.0 38 78.9


User provided reference genes

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