Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 3.3e-52 208.0 99 100.0
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 3.7e-43 177.9 94 87.2
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 1.5e-39 166.0 99 77.8
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 4.2e-39 164.5 99 77.8
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 2.1e-38 162.2 99 73.7
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 1.8e-37 159.1 99 74.7
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 3.0e-37 158.3 97 76.3
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 8.8e-37 156.8 98 76.5
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 1.5e-36 156.0 98 73.5
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 1.5e-36 156.0 99 75.8
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 2.0e-36 155.6 98 74.5
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.6e-36 155.2 99 73.7
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 3.4e-36 154.8 89 78.7
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 9.8e-36 153.3 92 76.1
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 9.8e-36 153.3 92 76.1
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 3.7e-35 151.4 92 72.8
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 3.7e-35 151.4 93 72.0
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 6.3e-35 150.6 96 70.8
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 6.3e-35 150.6 93 72.0
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 8.3e-35 150.2 88 75.0
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 8.3e-35 150.2 88 75.0
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 1.1e-34 149.8 99 71.7
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.1e-34 149.8 99 72.7
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 1.4e-34 149.4 99 71.7
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 1.8e-34 149.1 93 73.1
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 2.4e-34 148.7 99 71.7
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 3.1e-34 148.3 91 74.7
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 4.1e-34 147.9 99 68.7
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 4.1e-34 147.9 99 68.7
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 4.1e-34 147.9 93 75.3
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 5.4e-34 147.5 99 70.7
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 5.4e-34 147.5 99 68.7
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 5.4e-34 147.5 91 73.6
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 5.4e-34 147.5 99 68.7
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 7.0e-34 147.1 93 69.9
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 7.0e-34 147.1 91 74.7
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 7.0e-34 147.1 100 71.0
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 9.2e-34 146.7 99 67.7
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 9.2e-34 146.7 99 67.7
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.6e-33 146.0 96 71.9
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 2.0e-33 145.6 97 67.0
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 2.0e-33 145.6 97 67.0
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 2.0e-33 145.6 91 72.5
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 2.0e-33 145.6 91 73.6
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 2.0e-33 145.6 91 73.6
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 2.0e-33 145.6 91 73.6
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 2.0e-33 145.6 91 72.5
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 2.7e-33 145.2 97 67.0
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 2.7e-33 145.2 97 67.0
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.7e-33 145.2 96 71.9
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.7e-33 145.2 100 70.0
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 3.5e-33 144.8 93 73.1
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.5e-33 144.4 91 73.6
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 4.5e-33 144.4 96 70.8
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 5.9e-33 144.1 91 71.4
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 5.9e-33 144.1 91 71.4
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 7.8e-33 143.7 82 80.5
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 1.0e-32 143.3 85 76.5
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.0e-32 143.3 91 71.4
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 1.0e-32 143.3 97 71.1
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 1.3e-32 142.9 86 74.4
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 1.3e-32 142.9 89 73.0
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 1.7e-32 142.5 93 68.8
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 2.9e-32 141.7 118 61.0
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 3.8e-32 141.4 93 68.8
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 5.0e-32 141.0 99 68.7
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 6.6e-32 140.6 91 71.4
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 6.6e-32 140.6 100 66.0
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 6.6e-32 140.6 90 73.3
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 8.6e-32 140.2 94 70.2
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 8.6e-32 140.2 88 72.7
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 1.1e-31 139.8 99 68.7
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.1e-31 139.8 99 68.7
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.1e-31 139.8 97 66.0
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 1.1e-31 139.8 91 71.4
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 1.5e-31 139.4 94 70.2
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.5e-31 139.4 91 69.2
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.9e-31 139.0 94 68.1
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 1.9e-31 139.0 90 71.1
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 3.3e-31 138.3 90 68.9
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 5.6e-31 137.5 79 78.5
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 5.6e-31 137.5 90 70.0
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 7.3e-31 137.1 89 67.4
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 7.3e-31 137.1 95 67.4
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 7.3e-31 137.1 89 70.8
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 9.5e-31 136.7 97 64.9
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 9.5e-31 136.7 93 68.8
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 1.2e-30 136.3 91 69.2
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 1.6e-30 136.0 91 70.3
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 1.6e-30 136.0 93 67.7
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 1.6e-30 136.0 90 67.8
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 2.1e-30 135.6 98 66.3
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 2.1e-30 135.6 98 66.3
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 2.8e-30 135.2 88 69.3
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.8e-30 135.2 93 66.7
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 2.8e-30 135.2 91 69.2
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 4.7e-30 134.4 89 67.4
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 8.0e-30 133.7 93 66.7
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 3.0e-29 131.7 86 66.3
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 3.0e-29 131.7 86 66.3
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 8.9e-29 130.2 87 64.4
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 2.6e-28 128.6 85 64.7
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 4.4e-28 127.9 120 54.2
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 9.2e-26 120.2 93 57.0
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 1.6e-25 119.4 92 63.0
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 7.8e-25 117.1 85 57.6
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 6.6e-24 114.0 66 75.8
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 1.5e-23 112.8 68 75.0
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.9e-23 112.5 66 72.7
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 5.6e-23 110.9 63 76.2
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 9.5e-23 110.2 72 69.4
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 1.2e-22 109.8 65 72.3
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 1.6e-22 109.4 86 58.1
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 2.8e-22 108.6 66 71.2
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 1.8e-21 105.9 96 55.2
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.0e-21 104.8 85 62.4
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 4.0e-21 104.8 74 60.8
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 5.8e-20 100.9 63 69.8
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 2.9e-19 98.6 91 56.0
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 8.3e-19 97.1 62 71.0
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 1.1e-18 96.7 63 69.8
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 1.9e-18 95.9 63 66.7
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 3.2e-18 95.1 58 74.1
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 5.4e-18 94.4 64 68.8
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 1.2e-17 93.2 64 64.1
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.0e-17 92.4 52 76.9
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.5e-15 86.3 66 62.1
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 1.2e-14 83.2 66 59.1
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 1.6e-14 82.8 73 53.4
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 2.8e-14 82.0 58 63.8
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 3.1e-13 78.6 70 50.0
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 4.0e-13 78.2 55 63.6
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 5.8e-12 74.3 79 44.3
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 2.9e-11 72.0 80 48.8
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 4.1e-10 68.2 32 87.5
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 4.3e-07 58.2 62 43.5


User provided reference genes

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