Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 2.7e-158 562.0 288 100.0
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 1.5e-121 439.9 287 76.7
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 2.0e-121 439.5 289 75.8
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 1.7e-120 436.4 285 75.4
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 2.9e-120 435.6 285 75.8
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 8.4e-120 434.1 289 75.8
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 8.4e-120 434.1 289 76.5
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.1e-118 429.5 286 75.9
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 2.7e-118 429.1 284 75.4
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 3.5e-118 428.7 286 75.5
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 4.6e-118 428.3 284 75.0
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 7.8e-118 427.6 290 73.8
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.1e-116 423.7 286 74.8
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 1.5e-116 423.3 288 72.6
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 1.5e-116 423.3 286 72.0
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 3.6e-115 418.7 288 74.0
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 6.2e-115 417.9 288 72.2
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 6.2e-115 417.9 281 75.8
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 2.4e-114 416.0 292 73.6
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 8.9e-114 414.1 288 71.9
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 2.6e-113 412.5 287 73.5
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 4.4e-113 411.8 286 72.7
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 5.8e-113 411.4 288 71.2
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 7.6e-113 411.0 286 72.7
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 2.2e-112 409.5 288 69.8
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 2.2e-112 409.5 288 69.8
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 2.9e-112 409.1 285 73.3
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 8.4e-112 407.5 282 73.8
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 8.4e-112 407.5 282 73.4
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 1.1e-111 407.1 290 73.1
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 1.4e-111 406.8 288 71.2
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 2.4e-111 406.0 287 72.5
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 1.2e-110 403.7 282 72.0
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 1.6e-110 403.3 288 70.1
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 2.1e-110 402.9 288 70.1
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 2.1e-110 402.9 282 72.3
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 2.7e-110 402.5 288 70.1
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 3.5e-110 402.1 285 70.5
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 4.6e-110 401.7 282 72.3
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 6.0e-110 401.4 288 71.2
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 1.7e-109 399.8 281 69.0
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 2.3e-109 399.4 282 72.3
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.0e-109 399.1 296 70.3
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 3.9e-109 398.7 294 70.7
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 4.3e-108 395.2 282 69.9
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.1e-107 392.9 293 69.3
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 2.8e-107 392.5 259 74.5
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 4.8e-107 391.7 286 70.6
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 8.1e-107 391.0 287 69.3
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 3.1e-106 389.0 283 68.9
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 5.3e-106 388.3 286 67.8
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 1.5e-105 386.7 287 69.0
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 2.0e-105 386.3 286 68.2
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 2.0e-105 386.3 286 68.2
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 2.0e-105 386.3 286 68.2
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 3.4e-105 385.6 271 71.6
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 4.4e-105 385.2 293 65.5
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 4.4e-105 385.2 283 67.5
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 4.4e-105 385.2 287 67.2
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 5.8e-105 384.8 282 69.1
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 1.3e-104 383.6 284 68.7
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.2e-104 382.9 271 71.6
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 2.2e-104 382.9 229 82.1
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 2.9e-104 382.5 282 68.8
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 3.8e-104 382.1 278 69.1
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 4.9e-104 381.7 287 67.2
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 1.4e-103 380.2 293 65.2
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 5.4e-103 378.3 278 68.3
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 9.3e-103 377.5 291 67.0
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 9.3e-103 377.5 288 69.1
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 9.3e-103 377.5 230 82.2
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.2e-102 377.1 282 67.4
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 1.2e-102 377.1 287 67.9
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 1.6e-102 376.7 282 68.1
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 4.6e-102 375.2 244 77.0
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 6.0e-102 374.8 280 67.9
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 7.9e-102 374.4 281 68.0
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 7.9e-102 374.4 229 79.0
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.3e-101 373.6 286 65.7
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 2.3e-101 372.9 286 66.4
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 2.3e-101 372.9 281 67.3
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 2.3e-101 372.9 286 65.7
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 6.6e-101 371.3 229 79.0
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 1.9e-100 369.8 286 65.0
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 2.5e-100 369.4 293 66.6
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 9.6e-100 367.5 293 64.8
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 9.6e-100 367.5 321 61.1
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 9.6e-100 367.5 286 65.0
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 9.6e-100 367.5 286 65.0
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 9.6e-100 367.5 286 65.0
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 1.3e-99 367.1 283 65.4
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 1.6e-99 366.7 286 65.0
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 1.6e-99 366.7 282 67.7
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 2.1e-99 366.3 277 66.8
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 2.8e-99 365.9 265 69.4
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 4.8e-99 365.2 217 81.6
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 6.2e-99 364.8 286 64.7
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 1.4e-98 363.6 288 66.7
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 9.0e-98 360.9 286 63.6
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 3.4e-97 359.0 293 64.8
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 2.2e-96 356.3 280 66.4
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 7.1e-95 351.3 292 62.3
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 9.3e-95 350.9 288 65.6
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.5e-92 343.6 245 71.0
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 2.5e-92 342.8 280 64.6
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 2.4e-90 336.3 287 62.4
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 4.5e-89 332.0 254 66.5
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.3e-88 330.5 286 63.3
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 2.9e-88 329.3 294 61.2
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 4.2e-87 325.5 218 76.1
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 7.1e-87 324.7 253 64.4
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 1.8e-85 320.1 277 60.3
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 6.7e-85 318.2 229 69.0
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 4.3e-84 315.5 237 65.8
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 2.4e-82 309.7 229 68.6
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 9.0e-82 307.8 229 68.1
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 2.6e-81 306.2 236 64.4
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 6.5e-80 301.6 235 66.0
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 7.4e-76 288.1 233 61.8
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 9.0e-74 281.2 292 51.4
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.7e-67 260.4 267 51.7
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 4.8e-67 258.8 289 47.4
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.4e-63 247.3 210 65.7
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 9.4e-63 244.6 266 53.8
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.3e-59 234.2 151 74.8
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 6.3e-59 231.9 139 79.9
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.8e-58 230.3 197 54.3
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.6e-57 226.5 197 53.8
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.5e-57 226.1 197 53.3
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 7.7e-57 224.9 197 53.3
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 3.6e-54 216.1 262 50.8
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.0e-53 214.5 211 58.3
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 2.6e-52 209.9 138 74.6
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 5.7e-52 208.8 224 54.5
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.1e-46 190.3 197 47.7
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.5e-44 181.8 166 59.0
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 7.5e-36 155.2 185 45.9
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 4.5e-33 146.0 119 66.4
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 3.6e-30 136.3 188 39.4
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.4e-29 134.4 207 44.0
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 1.4e-29 134.4 89 74.2
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.7e-28 129.0 199 37.7
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 7.5e-28 128.6 190 41.6
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.7e-27 127.5 221 42.1
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 3.7e-27 126.3 76 78.9
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 6.4e-27 125.6 101 66.3
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 6.4e-27 125.6 101 66.3
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 3.3e-23 113.2 218 32.6
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.4e-18 97.8 59 76.3
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.4e-18 95.9 57 75.4
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 5.4e-18 95.9 57 75.4
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.6e-17 92.8 57 73.7
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 3.0e-16 90.1 91 49.5
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.3e-15 86.7 75 61.3
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 1.5e-12 77.8 51 66.7
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 2.6e-12 77.0 53 66.0
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 7.8e-09 65.5 87 46.0
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 7.3e-07 58.9 51 58.8
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 7.3e-07 58.9 51 58.8
BolC6t36313H Brassica oleracea HOM05D004641 ORTHO05D022007 6.2e-06 55.8 44 61.4
EL10Ac2g04116 Beta vulgaris HOM05D004641 ORTHO05D005871 8.1e-06 55.5 46 60.9
A09p29530 Brassica napus HOM05D004641 ORTHO05D022007 8.1e-06 55.5 61 49.2


User provided reference genes

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