Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.9e-123 445.3 234 100.0
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.2e-92 343.6 216 87.5
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.0e-55 219.9 180 70.6
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.5e-42 177.2 187 55.1
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 3.3e-42 176.0 194 55.7
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 4.1e-40 169.1 193 53.4
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 6.9e-40 168.3 187 55.1
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 9.1e-40 167.9 193 52.8
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 2.0e-39 166.8 183 54.1
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 2.6e-39 166.4 161 60.2
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.4e-39 166.0 229 48.0
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.5e-39 165.6 202 52.5
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 4.5e-39 165.6 187 53.5
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 2.9e-38 162.9 162 60.5
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.9e-38 162.9 162 60.5
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 2.9e-38 162.9 197 53.3
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.8e-38 162.5 162 60.5
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.8e-38 162.5 162 60.5
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 3.8e-38 162.5 181 53.0
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 1.1e-37 161.0 193 51.3
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.4e-37 160.6 162 59.9
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 2.5e-37 159.8 203 49.3
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 7.2e-37 158.3 172 57.0
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 7.2e-37 158.3 202 49.5
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 9.4e-37 157.9 184 53.3
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 1.2e-36 157.5 203 50.7
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.6e-36 157.1 181 52.5
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 2.1e-36 156.8 180 53.3
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.0e-35 154.5 198 51.0
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 2.6e-34 149.8 208 49.5
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 7.4e-34 148.3 181 50.3
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 2.8e-33 146.4 195 49.2
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 2.8e-33 146.4 193 49.2
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 4.8e-33 145.6 193 47.2
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 4.8e-33 145.6 204 48.0
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 4.8e-33 145.6 181 49.2
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 8.2e-33 144.8 205 48.8
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.4e-32 144.1 181 51.4
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.8e-32 143.7 184 50.0
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 5.3e-32 142.1 191 49.7
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 5.3e-32 142.1 205 48.3
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 9.1e-32 141.4 193 49.7
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 9.1e-32 141.4 200 48.5
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 1.2e-31 141.0 206 47.6
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 1.2e-31 141.0 193 46.1
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 2.0e-31 140.2 181 52.5
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 2.0e-31 140.2 193 46.1
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 2.0e-31 140.2 204 48.0
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 2.6e-31 139.8 200 47.5
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 4.5e-31 139.0 211 46.0
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 4.5e-31 139.0 204 47.5
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 5.9e-31 138.7 203 47.3
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 1.7e-30 137.1 202 49.0
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.7e-30 137.1 179 50.3
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 1.7e-30 137.1 200 48.5
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 2.2e-30 136.7 193 47.2
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 2.2e-30 136.7 197 46.7
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 2.9e-30 136.3 204 46.1
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 3.8e-30 136.0 199 46.7
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 5.0e-30 135.6 201 47.8
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 6.5e-30 135.2 197 46.7
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 8.5e-30 134.8 199 46.2
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 8.5e-30 134.8 193 46.6
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 1.1e-29 134.4 204 46.1
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 1.9e-29 133.7 180 52.2
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 3.2e-29 132.9 193 47.2
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 3.2e-29 132.9 205 45.9
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 4.2e-29 132.5 178 50.6
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 5.5e-29 132.1 180 46.1
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 5.5e-29 132.1 180 46.1
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 5.5e-29 132.1 113 66.4
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 5.5e-29 132.1 170 51.2
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 7.2e-29 131.7 190 45.3
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 7.2e-29 131.7 181 45.9
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 9.4e-29 131.3 180 47.2
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.6e-28 130.6 197 46.2
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 2.1e-28 130.2 183 49.2
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 2.1e-28 130.2 173 52.0
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 3.6e-28 129.4 181 47.0
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 3.6e-28 129.4 193 44.6
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 6.1e-28 128.6 200 47.5
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.4e-27 127.5 187 49.2
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 1.8e-27 127.1 189 47.1
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.8e-27 127.1 187 48.7
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 2.3e-27 126.7 178 49.4
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 3.0e-27 126.3 179 48.0
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 4.0e-27 125.9 200 45.5
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 4.0e-27 125.9 178 48.3
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 6.7e-27 125.2 189 46.6
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.2e-26 124.4 200 43.5
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 1.2e-26 124.4 178 47.8
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 1.5e-26 124.0 178 47.8
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.5e-26 124.0 181 49.7
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 2.0e-26 123.6 178 46.6
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.0e-26 123.6 203 42.9
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.6e-26 123.2 178 47.8
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 2.6e-26 123.2 178 46.6
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 3.3e-26 122.9 178 47.8
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 4.4e-26 122.5 178 47.8
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 4.4e-26 122.5 204 42.6
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 5.7e-26 122.1 185 43.8
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 9.7e-26 121.3 184 47.8
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 9.7e-26 121.3 178 50.0
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 9.7e-26 121.3 178 47.2
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 9.7e-26 121.3 185 46.5
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 9.7e-26 121.3 181 44.2
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 9.7e-26 121.3 184 47.3
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 1.3e-25 120.9 178 46.1
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 1.7e-25 120.6 178 47.2
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 1.7e-25 120.6 178 47.2
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 1.7e-25 120.6 178 47.2
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.2e-25 120.2 178 47.2
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.2e-25 120.2 178 46.6
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 2.2e-25 120.2 204 40.7
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 2.2e-25 120.2 178 46.6
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.8e-25 119.8 197 45.2
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 2.8e-25 119.8 147 51.7
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.1e-24 117.9 156 48.1
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.4e-24 117.5 125 55.2
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 1.8e-24 117.1 181 47.0
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 2.4e-24 116.7 182 44.0
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 3.1e-24 116.3 100 63.0
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 4.1e-24 115.9 179 45.3
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 5.3e-24 115.5 187 43.9
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 9.1e-24 114.8 178 46.1
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.6e-23 114.0 186 42.5
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.6e-23 114.0 186 42.5
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 2.0e-23 113.6 192 41.1
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 1.9e-21 107.1 209 42.6
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 9.4e-21 104.8 225 39.6
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 2.7e-20 103.2 209 39.7
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 3.0e-19 99.8 188 42.6
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 3.0e-19 99.8 139 48.9
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 5.2e-19 99.0 136 50.0
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 4.4e-18 95.9 148 46.6
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 7.5e-18 95.1 125 52.8
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 1.3e-14 84.3 121 43.8
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 3.2e-13 79.7 134 42.5
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 3.2e-13 79.7 134 42.5
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 1.4e-11 74.3 124 40.3
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 7.5e-10 68.6 92 45.7
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 2.8e-09 66.6 73 53.4
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 2.8e-09 66.6 133 36.8
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.4e-08 64.3 193 33.2


User provided reference genes

Program Settings