Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 3.9e-185 651.4 334 100.0
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 3.2e-163 578.6 334 88.6
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.8e-129 466.5 343 72.3
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 1.5e-128 463.4 343 72.3
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 4.3e-128 461.8 350 72.6
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 4.3e-128 461.8 342 71.6
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 1.3e-127 460.3 341 71.8
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 1.6e-127 459.9 343 70.8
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 2.8e-127 459.1 349 69.6
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.8e-127 458.4 334 72.5
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 4.1e-126 455.3 342 71.1
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 5.3e-126 454.9 344 70.6
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 9.0e-126 454.1 347 69.5
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 3.4e-125 452.2 355 69.6
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 2.2e-124 449.5 346 70.2
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 5.0e-124 448.4 345 70.1
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 5.0e-124 448.4 345 70.1
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.9e-123 446.4 345 70.1
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 3.2e-123 445.7 342 70.2
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 3.2e-123 445.7 343 70.3
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 9.4e-123 444.1 342 69.9
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.7e-122 442.6 342 69.9
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 3.6e-122 442.2 345 71.0
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 1.4e-121 440.3 346 69.1
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.8e-121 439.9 342 69.9
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 3.3e-120 435.6 345 69.0
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 5.7e-120 434.9 349 67.6
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 2.8e-119 432.6 348 67.8
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 3.1e-118 429.1 343 68.5
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.5e-117 426.8 342 67.5
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 2.6e-117 426.0 344 66.6
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 1.0e-116 424.1 344 66.0
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 5.0e-116 421.8 340 66.2
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.9e-115 419.9 342 66.7
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.2e-114 417.2 342 66.4
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 2.3e-113 412.9 343 67.1
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 3.0e-113 412.5 343 67.1
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 3.9e-113 412.1 340 66.2
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 5.1e-113 411.8 410 58.8
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 2.6e-112 409.5 344 65.1
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 5.7e-112 408.3 344 64.2
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 1.1e-110 404.1 346 63.6
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 1.8e-110 403.3 347 63.4
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 2.4e-110 402.9 345 64.3
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 3.1e-110 402.5 347 63.7
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 7.0e-110 401.4 343 63.8
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 9.1e-110 401.0 413 57.1
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 1.2e-109 400.6 345 63.5
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 1.6e-109 400.2 338 66.0
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 4.5e-109 398.7 342 65.2
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 7.7e-109 397.9 344 63.7
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 7.7e-109 397.9 345 63.8
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 7.7e-109 397.9 390 57.4
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 1.3e-108 397.1 344 63.7
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 2.2e-108 396.4 345 64.6
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 2.9e-108 396.0 347 62.8
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 2.5e-107 392.9 346 64.5
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 4.2e-107 392.1 345 64.3
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 2.7e-106 389.4 348 63.5
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.0e-105 387.5 346 63.0
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 1.8e-105 386.7 347 62.2
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.8e-105 386.7 339 64.9
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 5.2e-105 385.2 343 62.4
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 6.7e-105 384.8 341 63.0
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 2.6e-104 382.9 344 62.8
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 3.3e-104 382.5 343 63.3
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 3.3e-104 382.5 348 62.4
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 4.4e-104 382.1 393 58.3
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 4.4e-104 382.1 337 64.7
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 7.5e-104 381.3 342 64.0
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 7.5e-104 381.3 335 63.6
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 1.7e-103 380.2 337 62.9
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.7e-103 380.2 336 62.8
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 1.7e-103 380.2 343 62.4
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 6.3e-103 378.3 357 61.1
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.1e-102 377.5 348 61.2
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 1.1e-102 377.5 356 59.0
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 2.4e-102 376.3 340 62.6
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 5.3e-102 375.2 347 61.7
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.2e-101 374.0 339 61.4
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 1.6e-101 373.6 356 58.4
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 2.0e-101 373.2 333 63.1
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 2.7e-101 372.9 344 59.3
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 3.5e-101 372.5 294 69.7
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 3.5e-101 372.5 344 58.7
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 5.9e-101 371.7 346 60.4
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 7.7e-101 371.3 346 61.0
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.7e-100 370.2 335 61.2
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 2.2e-100 369.8 344 60.8
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 2.2e-100 369.8 336 62.5
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 2.9e-100 369.4 347 62.5
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 8.5e-100 367.9 336 62.5
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 1.1e-99 367.5 340 59.7
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 1.1e-99 367.5 345 60.9
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 1.9e-99 366.7 345 61.2
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 5.5e-99 365.2 337 62.9
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.1e-98 363.2 336 60.1
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.7e-98 362.8 344 61.0
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 4.7e-98 362.1 335 60.3
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 6.1e-98 361.7 347 60.5
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 6.1e-98 361.7 337 62.0
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 8.0e-98 361.3 350 57.4
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 8.0e-98 361.3 345 58.0
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 1.0e-97 360.9 250 73.6
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 1.0e-97 360.9 350 57.4
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 2.3e-97 359.8 343 60.1
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 4.0e-97 359.0 343 58.9
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 1.5e-96 357.1 339 58.1
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 2.8e-95 352.8 351 57.0
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 2.4e-94 349.7 339 58.7
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 4.1e-94 349.0 343 57.7
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 5.4e-94 348.6 342 54.7
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 2.0e-93 346.7 326 60.4
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 3.5e-93 345.9 324 60.2
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 3.5e-93 345.9 324 60.2
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 1.7e-92 343.6 335 59.4
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 1.7e-92 343.6 335 59.4
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 2.9e-92 342.8 338 60.7
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 8.5e-92 341.3 350 54.6
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 1.5e-91 340.5 343 58.9
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.5e-91 340.5 342 53.5
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 3.2e-91 339.3 343 58.6
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 5.5e-91 338.6 324 59.6
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 9.4e-91 337.8 342 58.5
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 2.1e-90 336.7 343 57.1
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 2.7e-90 336.3 341 57.8
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 6.1e-90 335.1 343 57.4
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 7.5e-88 328.2 327 58.4
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 7.5e-88 328.2 327 58.4
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 9.8e-88 327.8 335 57.9
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 1.1e-86 324.3 340 53.8
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 1.4e-86 323.9 335 57.6
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 1.8e-86 323.6 269 67.7
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 3.1e-86 322.8 344 53.2
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 7.0e-86 321.6 353 53.0
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 2.3e-84 316.6 357 52.9
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 1.1e-83 314.3 341 53.7
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 4.3e-83 312.4 339 52.5
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 8.0e-82 308.1 258 65.1
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 2.4e-78 296.6 274 62.8
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 2.5e-75 286.6 244 65.2
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 7.3e-67 258.5 200 70.5
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 2.6e-64 250.0 233 56.7
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 3.4e-64 249.6 334 50.6
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 3.3e-59 233.0 339 44.5
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.5e-48 197.6 334 40.4
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 9.9e-48 194.9 320 42.2
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 1.6e-34 151.0 386 32.6
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 2.0e-32 144.1 226 42.5
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 2.3e-28 130.6 146 55.5
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.9e-22 110.9 152 40.8
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 1.9e-22 110.9 157 44.6
Oeu004249.1 Olea europaea HOM05D004688 ORTHO05D005490 7.1e-22 109.0 230 34.3
SGA_v2.0_scaffold249G44960 Striga asiatica HOM05D004688 ORTHO05D005490 9.6e-19 98.6 92 58.7
Mapoly0010s0074 Marchantia polymorpha HOM05D017133 ORTHO05D005490 1.0e-12 78.6 272 26.1
unitig_8.g5063 Utricularia gibba HOM05D004688 ORTHO05D005490 8.7e-12 75.5 150 35.3
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 1.4e-09 68.2 186 30.1
Peaxi162Scf00120g01119 Petunia axillaris HOM05D002883 ORTHO05D003116 1.2e-08 65.1 180 33.3
Pp3c24_15840 Physcomitrium patens HOM05D017133 ORTHO05D005490 2.0e-08 64.3 365 23.8
Pp3c7_3600 Physcomitrium patens HOM05D017133 ORTHO05D019609 2.6e-08 63.9 245 27.8
AagrBONN_evm.TU.Sc2ySwM_117.2972 Anthoceros agrestis HOM05D034434 ORTHO05D019609 5.0e-07 59.7 240 22.9
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 3.2e-06 57.0 259 23.2
AagrBONN_evm.TU.Sc2ySwM_228.4062 Anthoceros agrestis HOM05D034434 ORTHO05D002774 7.2e-06 55.8 176 23.9


User provided reference genes

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