Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G1525 Tripterygium wilfordii HOM05D005395 ORTHO05D006352 0.0e+00 2714.1 1326 100.0
TAR633G2667 Trochodendron aralioides HOM05D005395 ORTHO05D006352 0.0e+00 1302.0 1383 51.9
Cfa008089 Carpinus fangiana HOM05D005395 ORTHO05D006352 0.0e+00 1289.6 1354 52.1
Prupe.2G012600 Prunus persica HOM05D005395 ORTHO05D006352 0.0e+00 1241.9 1345 52.3
QL11p003492 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1233.4 1343 51.3
RcHm_v2.0_Chr1g0315901 Rosa chinensis HOM05D005395 ORTHO05D006352 0.0e+00 1224.5 1344 50.7
Manes.10G091300 Manihot esculenta HOM05D005395 ORTHO05D006352 0.0e+00 1218.8 1271 52.2
MD07G1010300 Malus domestica HOM05D005395 ORTHO05D006352 0.0e+00 1217.6 1343 51.6
FAN03G2830 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1215.7 1341 50.5
QL02p026227 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1207.2 1320 50.7
FAN06G4072 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1201.4 1340 50.0
FvH4_7g01000 Fragaria vesca HOM05D005395 ORTHO05D006352 0.0e+00 1198.0 1340 49.9
FAN10G2468 Fragaria x ananassa HOM05D005395 ORTHO05D006352 0.0e+00 1192.6 1351 49.6
Ciclev10030541m.g Citrus clementina HOM05D005395 ORTHO05D006352 0.0e+00 1187.6 1346 50.1
QL12p011919 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1187.6 1292 51.2
Nn7g36191 Nelumbo nucifera HOM05D005395 ORTHO05D006352 0.0e+00 1178.7 1360 48.8
QL05p060653 Quercus lobata HOM05D005395 ORTHO05D006352 0.0e+00 1171.8 1403 47.9
Psat5g193800 Pisum sativum HOM05D005395 ORTHO05D006352 0.0e+00 1157.5 1347 47.5
Rhsim07G0055200 Rhododendron simsii HOM05D005395 ORTHO05D006352 0.0e+00 1146.0 1390 47.4
Potri.003G022600 Populus trichocarpa HOM05D005395 ORTHO05D006352 0.0e+00 1135.6 1335 48.5
CANSAT78G1614 Cannabis sativa HOM05D005395 ORTHO05D006352 0.0e+00 1135.2 1345 46.9
Lj3g0013961 Lotus japonicus HOM05D005395 ORTHO05D006352 0.0e+00 1122.8 1341 47.1
Phvul.005G021500 Phaseolus vulgaris HOM05D005395 ORTHO05D006352 0.0e+00 1120.5 1335 47.5
Sed0006979 Sechium edule HOM05D005395 ORTHO05D006352 0.0e+00 1107.8 1338 47.5
Glyma.15G274000 Glycine max HOM05D005395 ORTHO05D006352 0.0e+00 1101.3 1342 46.8
Glyma.08G155900 Glycine max HOM05D005395 ORTHO05D006352 0.0e+00 1099.7 1336 47.2
VMungo1080G1687 Vigna mungo HOM05D005395 ORTHO05D006352 0.0e+00 1080.5 1334 46.2
arahy.Tifrunner.gnm1.ann1.XBA78H Arachis hypogaea HOM05D005395 ORTHO05D006352 9.1e-312 1074.7 1347 45.8
ClCG10G012430 Citrullus lanatus HOM05D005395 ORTHO05D006352 9.1e-312 1073.5 1332 46.6
GSVIVG01032086001 Vitis vinifera HOM05D005395 ORTHO05D006352 9.1e-312 1073.5 1328 46.5
Sabra03G0014300 Salix brachista HOM05D005395 ORTHO05D006352 2.4e-310 1069.3 1350 46.4
Gorai.012G022200 Gossypium raimondii HOM05D005395 ORTHO05D006352 2.4e-302 1042.7 1341 44.4
Gohir.D04G018600 Gossypium hirsutum HOM05D005395 ORTHO05D006352 5.8e-301 1038.1 1341 44.4
Thecc.10G136000 Theobroma cacao HOM05D005395 ORTHO05D006352 4.3e-296 1021.9 1170 49.3
Gohir.A05G396700 Gossypium hirsutum HOM05D005395 ORTHO05D006352 1.6e-295 1020.0 1338 43.9
CiPaw.13G004500 Carya illinoinensis HOM05D005395 ORTHO05D006352 4.2e-291 1005.4 983 55.2
SGA_v2.0_scaffold119G32730 Striga asiatica HOM05D005395 ORTHO05D006352 6.2e-287 991.5 1343 43.6
Nitab4.5_0013258g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.8e-286 989.9 1358 42.7
Oeu063172.1 Olea europaea HOM05D005395 ORTHO05D006352 4.5e-285 985.3 1381 43.0
Nitab4.5_0000634g0140 Nicotiana tabacum HOM05D005395 ORTHO05D006352 1.3e-279 967.2 1327 42.4
Lj7C570T8 Lonicera japonica HOM05D005395 ORTHO05D006352 2.6e-277 959.5 1024 52.4
Solyc01g087095.2 Solanum lycopersicum HOM05D005395 ORTHO05D006352 4.5e-277 958.7 1343 42.5
Sopen01g034170 Solanum pennellii HOM05D005395 ORTHO05D006352 5.0e-276 955.3 1343 42.4
COL.COLO4_04642 Corchorus olitorius HOM05D005395 ORTHO05D006352 2.7e-274 949.5 1379 42.3
PSO339G2846 Papaver somniferum HOM05D005395 ORTHO05D006352 5.7e-272 941.8 1363 41.1
Aqoxy1G02896 Aquilegia oxysepala HOM05D005395 ORTHO05D006352 1.4e-270 937.2 1370 40.2
MBI03_g07304_MAGBIO Magnolia biondii HOM05D005395 ORTHO05D006352 2.6e-269 932.9 1465 40.0
PGR042G3169 Punica granatum HOM05D005395 ORTHO05D006352 3.4e-269 932.6 1373 41.3
MELO3C023972.2 Cucumis melo HOM05D005395 ORTHO05D006352 4.5e-269 932.2 1340 42.6
Hund24995 Selenicereus undatus HOM05D005395 ORTHO05D006352 5.0e-268 928.7 1366 40.3
arahy.Tifrunner.gnm1.ann1.LX21RY Arachis hypogaea HOM05D005395 ORTHO05D006352 3.7e-263 912.5 1347 41.6
EL10Ac1g02254 Beta vulgaris HOM05D005395 ORTHO05D006352 1.9e-259 900.2 1368 40.4
Peaxi162Scf00428g00318 Petunia axillaris HOM05D005395 ORTHO05D006352 7.4e-256 888.3 1355 39.6
AUR62041247 Chenopodium quinoa HOM05D005395 ORTHO05D006352 2.0e-253 880.2 1365 39.6
Ca_14376_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 2.7e-250 869.8 829 53.9
HanXRQChr12g0379891 Helianthus annuus HOM05D005395 ORTHO05D006352 8.3e-247 858.2 1327 38.9
CAN.G1820.1 Capsicum annuum HOM05D005395 ORTHO05D006352 9.1e-238 828.2 993 46.4
AT5G16850 Arabidopsis thaliana HOM05D005395 ORTHO05D006352 5.4e-230 802.4 1330 37.6
vmacro13663 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 3.9e-228 796.2 850 50.9
Atru.chr11.730 Acer truncatum HOM05D005395 ORTHO05D006352 4.3e-227 792.7 957 47.8
Sp6g27270 Schrenkiella parvula HOM05D005395 ORTHO05D006352 9.5e-227 791.6 1330 37.6
CARHR196310 Cardamine hirsuta HOM05D005395 ORTHO05D006352 1.6e-226 790.8 1322 37.7
BolC9t58856H Brassica oleracea HOM05D005395 ORTHO05D006352 1.8e-225 787.3 1331 37.6
C09p60230 Brassica napus HOM05D005395 ORTHO05D006352 3.4e-224 783.1 1331 37.5
Carub.0006s1507 Capsella rubella HOM05D005395 ORTHO05D006352 5.8e-224 782.3 1321 37.0
unitig_0.g1385 Utricularia gibba HOM05D005395 ORTHO05D006352 4.9e-223 779.2 1328 36.4
DCAR_005449 Daucus carota HOM05D005395 ORTHO05D006352 1.9e-219 767.3 842 50.6
Migut.B01303 Erythranthe guttata HOM05D005395 ORTHO05D006352 4.3e-219 766.1 1246 39.2
BraA10t44297Z Brassica rapa HOM05D005395 ORTHO05D006352 7.3e-219 765.4 1340 36.3
A10p22380 Brassica napus HOM05D005395 ORTHO05D006352 2.1e-218 763.8 1334 36.7
Aa31sc160G20 Aethionema arabicum HOM05D005395 ORTHO05D006352 1.4e-214 751.1 1362 36.0
Thhalv10012498m.g Eutrema salsugineum HOM05D005395 ORTHO05D006352 2.4e-214 750.4 1333 36.2
Actinidia24666 Actinidia chinensis HOM05D005395 ORTHO05D006352 6.4e-199 699.1 1188 38.7
AUR62014136 Chenopodium quinoa HOM05D005395 ORTHO05D006352 1.6e-194 684.5 1487 33.0
Sc04g0005700 Simmondsia chinensis HOM05D005395 ORTHO05D006352 4.8e-194 682.9 860 43.8
Migut.B01025 Erythranthe guttata HOM05D005395 ORTHO05D006352 2.4e-193 680.6 874 43.9
CsaV3_3G032200 Cucumis sativus L. HOM05D005395 ORTHO05D006352 1.5e-184 651.4 993 41.6
BcaC04g18841 Brassica carinata HOM05D005395 ORTHO05D006352 1.3e-178 631.7 1326 33.3
Lsat_1_v5_gn_4_31580 Lactuca sativa HOM05D005395 ORTHO05D006352 2.3e-156 557.8 1178 34.5
ECA234G1269 Erigeron canadensis HOM05D005395 ORTHO05D000002 2.1e-149 534.6 577 48.0
SHI19147 Sapria himalayana HOM05D005395 ORTHO05D006352 3.2e-142 510.8 931 37.9
Mapoly0009s0015 Marchantia polymorpha HOM05D005395 ORTHO05D006352 7.0e-137 493.0 1745 26.1
AagrBONN_evm.TU.Sc2ySwM_344.2351 Anthoceros agrestis HOM05D005395 ORTHO05D006352 3.1e-129 467.6 1587 26.3
Lalb_Chr13g0291151 Lupinus albus HOM05D005395 ORTHO05D006352 4.7e-125 453.8 367 63.2
Atru.chr11.731 Acer truncatum HOM05D005395 ORTHO05D006352 1.0e-124 452.6 367 62.4
HPP92_011342 Vanilla planifolia HOM05D005395 ORTHO05D006352 4.4e-123 447.2 595 43.0
vmacro19894 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 4.1e-121 440.7 475 49.7
ATR0681G222 Amborella trichopoda HOM05D005395 ORTHO05D006352 2.0e-120 438.3 963 32.7
TPR.G30923 Trifolium pratense HOM05D005395 ORTHO05D006352 1.3e-119 435.6 368 60.3
Pp3c1_42700 Physcomitrium patens HOM05D005395 ORTHO05D006352 1.6e-117 428.7 978 29.8
SHI19148 Sapria himalayana HOM05D005395 ORTHO05D006352 3.6e-117 427.6 384 57.3
Hma1.2p1_0293F.1_g116170 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 2.3e-116 424.9 382 56.0
Lalb_Chr13g0291141 Lupinus albus HOM05D005395 ORTHO05D006352 1.8e-108 398.7 421 49.2
Cpa.g.sc245.16 Carica papaya HOM05D005395 ORTHO05D006352 7.3e-102 376.7 316 57.9
QL05p050737 Quercus lobata HOM05D005395 ORTHO05D006352 1.6e-85 322.4 407 45.2
Lalb_Chr13g0291131 Lupinus albus HOM05D005395 ORTHO05D006352 4.8e-77 294.3 505 37.8
Hma1.2p1_0293F.1_g116180 Hydrangea macrophylla HOM05D005395 ORTHO05D006352 3.5e-72 278.1 316 50.6
MCO03G604 Micromonas commoda HOM05D005395 ORTHO05D006352 4.8e-69 267.7 974 25.9
HPP92_011265 Vanilla planifolia HOM05D005395 ORTHO05D006352 1.1e-68 266.5 286 51.4
Cpa.g.sc245.15 Carica papaya HOM05D005395 ORTHO05D006352 4.9e-66 257.7 255 53.3
SEGI_03843 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 2.5e-62 245.4 438 33.6
Dinv12038 Davidia involucrata HOM05D005395 ORTHO05D006352 5.3e-60 237.7 191 60.7
SEGI_22370 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.5e-59 236.1 345 39.4
SEGI_30633 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 1.5e-59 236.1 345 39.4
Nitab4.5_0002179g0010 Nicotiana tabacum HOM05D005395 ORTHO05D006352 6.0e-56 224.2 209 56.0
PSO384G3069 Papaver somniferum HOM05D005395 ORTHO05D006352 8.2e-53 213.8 242 42.6
SEGI_09183 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 9.0e-52 210.3 535 29.5
Lj7P570T32 Lonicera japonica HOM05D005395 ORTHO05D006352 2.6e-51 208.8 194 54.1
Cfa026815 Carpinus fangiana HOM05D005395 ORTHO05D006352 3.3e-46 191.8 648 25.2
CAN.G1820.3 Capsicum annuum HOM05D005395 ORTHO05D006352 4.8e-45 188.0 181 49.7
BcaC04g18840 Brassica carinata HOM05D005395 ORTHO05D006352 1.9e-41 176.0 180 46.7
CDE07G0235 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 1.4e-39 169.9 218 43.1
Cpa.g.sc245.13 Carica papaya HOM05D005395 ORTHO05D006352 1.5e-38 166.4 146 56.8
ATR0829G203 Amborella trichopoda HOM05D005395 ORTHO05D006352 3.2e-33 148.7 189 38.6
CBR_g45714 Chara braunii HOM05D005395 ORTHO05D006352 1.6e-27 129.8 354 27.7
CBR_g45710 Chara braunii HOM05D005395 ORTHO05D006352 8.5e-26 124.0 185 42.2
Cre04.g213652 Chlamydomonas reinhardtii HOM05D005395 ORTHO05D006352 1.1e-25 123.6 201 32.3
Ca_14375_v3 Cicer arietinum L. HOM05D005395 ORTHO05D006352 1.6e-24 119.8 391 29.4
CDE07G1503 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 3.7e-21 108.6 113 45.1
Os12g0293100 Oryza sativa ssp. japonica HOM05D005395 ORTHO05D006352 3.8e-18 98.6 326 26.7
PSO384G2197 Papaver somniferum HOM05D005395 ORTHO05D006352 7.2e-17 94.4 111 44.1
SEGI_37340 Sequoiadendron giganteum HOM05D005395 ORTHO05D006352 7.2e-17 94.4 158 33.5
Lsat_1_v5_gn_3_2761 Lactuca sativa HOM05D005395 ORTHO05D006352 2.7e-16 92.4 140 40.7
CSS0040942 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 9.8e-14 84.0 73 61.6
SHI19146 Sapria himalayana HOM05D005395 ORTHO05D002065 1.1e-12 80.5 96 42.7
vmacro13662 Vaccinium macrocarpon HOM05D005395 ORTHO05D006352 4.1e-12 78.6 241 31.5
CSS0036458 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 9.1e-12 77.4 73 60.3
CSS0041236 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 3.5e-11 75.5 73 58.9
BcaC06g35111 Brassica carinata HOM05D020491 ORTHO05D006352 1.0e-10 73.9 86 45.3
CSS0042886 Camellia sinensis var. sinensis HOM05D005395 ORTHO05D006352 2.3e-10 72.8 73 57.5
QL02p026296 Quercus lobata HOM05D005395 ORTHO05D006352 3.8e-10 72.0 102 37.3
CDE07G0311 Ceratophyllum demersum HOM05D005395 ORTHO05D006352 6.5e-10 71.2 69 53.6
Aa31sc690G30 Aethionema arabicum HOM05D005395 ORTHO05D006352 1.1e-09 70.5 113 35.4
BcaC01g02118 Brassica carinata HOM05D014762 ORTHO05D023916 7.2e-09 67.8 54 57.4
BcaB02g11432 Brassica carinata HOM05D020491 ORTHO05D006352 1.0e-07 63.9 55 50.9
DCAR_005448 Daucus carota HOM05D005395 ORTHO05D006352 4.0e-07 62.0 97 36.1
DCAR_024213 Daucus carota HOM05D005395 ORTHO05D006352 3.4e-06 58.9 96 35.4
BcaC06g35590 Brassica carinata HOM05D033522 ORTHO05D024133 4.4e-06 58.5 75 41.3
Rhsim02G0130700 Rhododendron simsii HOM05D007456 ORTHO05D009411 7.5e-06 57.8 47 57.4


User provided reference genes

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