Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 5.2e-73 277.7 149 100.0
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 8.3e-63 243.8 149 88.6
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.8e-62 242.7 148 83.1
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 3.5e-61 238.4 149 83.2
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 3.5e-61 238.4 148 82.4
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 5.9e-61 237.7 144 84.7
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 1.0e-60 236.9 149 83.2
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 1.3e-60 236.5 149 82.6
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 1.3e-60 236.5 144 82.6
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 1.7e-60 236.1 149 81.9
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 2.3e-60 235.7 149 82.6
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 2.3e-60 235.7 147 83.7
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 2.9e-60 235.3 149 81.2
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 5.0e-60 234.6 150 82.7
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 5.0e-60 234.6 148 82.4
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 6.6e-60 234.2 149 83.9
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 6.6e-60 234.2 149 80.5
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.1e-59 233.4 149 82.6
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.1e-59 233.4 149 82.6
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.5e-59 233.0 149 82.6
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 1.5e-59 233.0 145 83.4
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.9e-59 232.6 149 81.9
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 1.9e-59 232.6 147 83.0
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 1.9e-59 232.6 146 80.8
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 2.5e-59 232.3 146 82.9
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 3.3e-59 231.9 149 79.9
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 3.3e-59 231.9 145 83.4
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 3.3e-59 231.9 149 84.6
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 4.3e-59 231.5 149 81.2
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 4.3e-59 231.5 147 83.7
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 4.3e-59 231.5 149 81.9
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 4.3e-59 231.5 149 81.9
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 4.3e-59 231.5 146 80.1
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 4.3e-59 231.5 147 83.0
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 5.6e-59 231.1 149 81.2
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 5.6e-59 231.1 149 81.2
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 5.6e-59 231.1 147 83.0
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 5.6e-59 231.1 149 80.5
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 7.3e-59 230.7 147 80.3
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 7.3e-59 230.7 147 80.3
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 7.3e-59 230.7 144 81.9
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 9.5e-59 230.3 147 84.4
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 9.5e-59 230.3 147 82.3
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 1.2e-58 229.9 148 79.1
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 1.6e-58 229.6 150 81.3
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 1.6e-58 229.6 147 83.0
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 2.1e-58 229.2 149 80.5
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 2.1e-58 229.2 148 77.0
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 2.1e-58 229.2 149 81.2
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 2.8e-58 228.8 147 78.2
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 2.8e-58 228.8 149 81.2
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 3.6e-58 228.4 140 83.6
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 3.6e-58 228.4 149 81.2
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 3.6e-58 228.4 145 82.1
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 4.7e-58 228.0 145 82.1
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 4.7e-58 228.0 149 79.2
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 6.1e-58 227.6 148 81.1
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 6.1e-58 227.6 148 80.4
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 8.0e-58 227.3 145 82.1
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 8.0e-58 227.3 145 80.0
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 8.0e-58 227.3 145 80.0
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 1.4e-57 226.5 149 79.2
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 2.3e-57 225.7 148 79.7
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 2.3e-57 225.7 151 78.8
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 2.3e-57 225.7 149 79.2
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 2.3e-57 225.7 144 81.9
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 3.0e-57 225.3 149 81.2
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 4.0e-57 224.9 149 81.2
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 4.0e-57 224.9 149 77.9
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 5.2e-57 224.6 149 77.2
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 6.8e-57 224.2 148 79.1
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 6.8e-57 224.2 145 80.0
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 8.9e-57 223.8 148 77.0
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 2.0e-56 222.6 147 77.6
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 2.6e-56 222.2 141 80.1
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 2.6e-56 222.2 145 78.6
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 3.4e-56 221.9 143 81.1
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 4.4e-56 221.5 145 78.6
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.4e-56 221.5 145 78.6
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 4.4e-56 221.5 145 77.9
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.3e-55 219.9 145 76.6
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 1.3e-55 219.9 146 78.8
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 1.7e-55 219.5 144 75.0
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 2.9e-55 218.8 147 74.8
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 4.9e-55 218.0 143 75.5
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 4.9e-55 218.0 145 75.9
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 4.9e-55 218.0 142 78.9
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 8.3e-55 217.2 144 75.0
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.1e-54 216.9 142 76.1
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 1.1e-54 216.9 142 76.1
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 1.8e-54 216.1 148 75.7
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 2.4e-54 215.7 144 73.6
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 7.0e-54 214.2 144 76.4
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 9.2e-54 213.8 149 71.8
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 1.2e-53 213.4 142 76.8
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 2.7e-53 212.2 142 76.8
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 2.7e-53 212.2 144 75.7
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 6.0e-53 211.1 147 74.1
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 1.7e-52 209.5 140 75.0
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 1.7e-52 209.5 135 78.5
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 2.3e-52 209.1 140 75.0
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 5.0e-52 208.0 149 73.8
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 5.0e-52 208.0 134 79.1
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 6.6e-52 207.6 144 73.6
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 2.5e-51 205.7 125 87.2
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 2.5e-51 205.7 149 69.8
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 9.5e-51 203.8 145 72.4
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 3.4e-48 195.3 147 70.7
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 9.8e-48 193.7 150 69.3
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 1.3e-47 193.4 139 71.2
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 1.3e-47 193.4 139 71.2
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 1.3e-47 193.4 139 71.2
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 1.7e-47 193.0 150 68.7
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 3.7e-47 191.8 139 70.5
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 8.3e-47 190.7 141 70.2
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 1.1e-46 190.3 149 67.1
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 1.9e-46 189.5 149 67.8
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 2.4e-46 189.1 141 69.5
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 2.4e-46 189.1 141 69.5
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 3.2e-46 188.7 134 71.6
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 4.1e-46 188.3 142 69.0
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 5.4e-46 188.0 136 69.1
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 5.4e-46 188.0 143 68.5
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 7.0e-46 187.6 138 68.1
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 7.0e-46 187.6 116 81.0
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 7.8e-45 184.1 150 68.0
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 1.7e-44 183.0 142 69.7
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 2.3e-44 182.6 148 69.6
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 3.0e-44 182.2 150 67.3
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.1e-43 180.3 120 77.5
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.6e-42 176.4 144 62.5
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 2.1e-42 176.0 145 64.1
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 6.8e-41 171.0 150 63.3
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 2.2e-39 166.0 147 59.9
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 2.3e-36 156.0 140 57.9
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 1.6e-34 149.8 132 60.6
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.5e-32 143.3 133 57.9
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.3e-31 140.2 112 60.7
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 5.1e-28 128.3 133 53.4
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 3.1e-25 119.0 90 71.1
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 5.2e-25 118.2 109 60.6
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 3.2e-22 109.0 95 64.2
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 6.0e-21 104.8 139 42.4
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 1.3e-20 103.6 135 40.0
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 3.2e-14 82.4 87 51.7
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 4.6e-13 78.6 46 80.4


User provided reference genes

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