Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 2.6e-155 552.0 277 100.0
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 6.0e-99 364.8 271 70.1
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 9.6e-97 357.5 267 69.3
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 5.2e-95 351.7 247 70.4
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 7.6e-94 347.8 266 67.7
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 2.9e-93 345.9 268 66.8
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 1.4e-92 343.6 273 67.0
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 3.2e-92 342.4 247 70.9
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 3.2e-92 342.4 269 66.2
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 4.2e-92 342.0 268 67.2
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 7.1e-92 341.3 264 67.4
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 2.7e-91 339.3 268 66.8
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 2.3e-90 336.3 254 67.7
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 3.9e-90 335.5 269 66.2
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 8.7e-90 334.3 271 64.6
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 8.7e-90 334.3 266 68.4
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 2.5e-89 332.8 256 65.6
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 9.6e-89 330.9 256 66.8
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.3e-88 330.5 244 70.1
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 1.3e-88 330.5 244 70.1
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 3.6e-88 328.9 263 65.0
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 3.6e-88 328.9 256 66.4
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 2.4e-87 326.2 256 64.1
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 2.4e-87 326.2 256 64.1
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 5.3e-87 325.1 256 64.5
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 1.2e-86 323.9 266 65.0
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 2.0e-86 323.2 251 67.7
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 2.6e-86 322.8 264 63.3
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 2.6e-86 322.8 262 65.3
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 3.4e-86 322.4 260 63.8
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 2.2e-85 319.7 254 65.7
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 2.2e-85 319.7 251 66.5
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 1.1e-84 317.4 246 65.9
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 2.4e-84 316.2 264 64.4
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 3.2e-84 315.8 259 62.5
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 5.4e-84 315.1 247 66.4
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 7.1e-84 314.7 264 61.7
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 2.7e-83 312.8 263 62.4
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 4.6e-83 312.0 259 62.5
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 6.0e-83 311.6 258 65.1
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 3.0e-82 309.3 257 61.9
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 6.6e-82 308.1 264 62.1
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 6.6e-82 308.1 251 63.7
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 6.6e-82 308.1 254 64.2
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 8.7e-82 307.8 265 62.6
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 8.7e-82 307.8 273 59.7
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 8.7e-82 307.8 267 60.3
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 1.1e-81 307.4 256 61.3
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 1.9e-81 306.6 243 65.0
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 4.3e-81 305.4 256 61.7
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 5.6e-81 305.1 266 62.0
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 9.6e-81 304.3 257 61.1
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 2.1e-80 303.1 256 60.2
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 2.1e-80 303.1 256 61.3
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 2.1e-80 303.1 263 60.1
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 3.6e-80 302.4 261 59.8
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 4.8e-80 302.0 256 60.9
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 4.8e-80 302.0 256 61.3
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 8.1e-80 301.2 245 65.7
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 8.1e-80 301.2 256 60.9
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 8.1e-80 301.2 256 60.9
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.8e-79 300.1 250 62.8
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.8e-79 300.1 250 62.8
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 2.4e-79 299.7 256 60.5
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 5.3e-79 298.5 256 60.2
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 6.9e-79 298.1 243 60.5
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 2.0e-78 296.6 267 59.6
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 2.6e-78 296.2 260 61.2
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 5.8e-78 295.0 256 60.2
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 9.9e-78 294.3 256 60.2
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 1.7e-77 293.5 273 59.3
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 3.8e-77 292.4 259 59.1
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 3.8e-77 292.4 247 60.7
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 8.4e-77 291.2 261 59.4
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 8.4e-77 291.2 271 59.0
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 3.2e-76 289.3 240 62.5
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 3.2e-76 289.3 242 64.0
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 4.2e-76 288.9 256 59.8
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 5.5e-76 288.5 251 59.0
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 5.5e-76 288.5 245 61.2
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 1.2e-75 287.3 242 63.2
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 4.6e-75 285.4 243 62.1
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 4.6e-75 285.4 210 68.6
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 1.5e-73 280.4 244 59.8
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 2.5e-73 279.6 242 61.6
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 3.3e-73 279.3 251 57.0
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 3.3e-73 279.3 260 56.9
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 8.1e-72 274.6 242 60.7
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 3.1e-71 272.7 242 59.5
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 4.0e-71 272.3 242 58.7
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 9.0e-71 271.2 229 58.5
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.6e-70 269.6 243 57.2
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 3.4e-70 269.2 242 58.3
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 1.0e-69 267.7 264 56.1
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 1.3e-69 267.3 254 56.7
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 2.2e-69 266.5 245 59.6
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 3.8e-69 265.8 273 53.1
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 6.5e-69 265.0 265 54.3
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 1.1e-68 264.2 242 58.7
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.5e-68 263.1 243 56.4
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 5.5e-68 261.9 243 56.0
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 7.1e-68 261.5 238 59.7
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 3.5e-67 259.2 244 58.6
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 5.1e-66 255.4 225 58.2
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 1.1e-65 254.2 262 52.3
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 3.1e-63 246.1 247 53.0
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 4.1e-63 245.7 258 52.7
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 4.1e-63 245.7 242 54.5
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 8.5e-61 238.0 265 52.5
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.9e-60 236.9 183 68.3
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 1.9e-60 236.9 205 62.9
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 2.5e-60 236.5 241 53.9
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 1.0e-58 231.1 253 51.8
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 6.7e-58 228.4 251 53.4
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 7.4e-57 224.9 220 57.3
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 1.1e-55 221.1 210 58.1
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 1.2e-51 207.6 239 50.2
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 3.6e-51 206.1 240 49.2
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 9.7e-49 198.0 230 47.8
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 9.7e-49 198.0 156 62.8
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 2.6e-46 189.9 244 45.9
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 6.5e-37 158.7 144 54.2
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 7.2e-36 155.2 107 64.5
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 2.7e-35 153.3 134 60.4
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.0e-34 151.4 170 48.8
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 5.2e-34 149.1 149 49.0
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 6.7e-34 148.7 265 40.8
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 6.7e-34 148.7 216 40.3
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 9.7e-33 144.8 223 37.7
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.2e-32 143.7 255 38.8
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 4.8e-32 142.5 227 36.6
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 4.1e-31 139.4 263 35.4
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 4.5e-30 136.0 226 35.8
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 1.5e-28 131.0 233 33.9
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 6.8e-26 122.1 250 33.6
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.0e-25 120.6 156 46.2
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 8.3e-16 88.6 81 59.3
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 5.9e-14 82.4 89 51.7
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 5.9e-14 82.4 89 51.7
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 9.5e-12 75.1 73 57.5
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 2.8e-11 73.6 166 32.5
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 3.2e-07 60.1 93 39.8


User provided reference genes

Program Settings