Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 2383.6 1252 100.0
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1533.1 1260 64.1
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1526.9 1267 64.5
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1494.6 1265 63.2
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 1476.5 1267 63.3
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1468.4 1261 61.9
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1451.8 1263 62.9
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1421.4 1259 60.8
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1416.0 1261 61.4
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1412.9 1268 60.4
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1410.6 1263 59.7
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1399.4 1258 60.1
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1399.4 1258 60.0
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1395.9 1258 59.9
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1395.6 1257 59.1
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1394.0 1268 59.8
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1384.0 1266 59.2
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1382.5 1257 59.3
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1379.8 1257 58.9
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1373.6 1256 58.8
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1361.3 1261 59.6
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1360.9 1260 59.2
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1357.0 1263 58.6
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1348.2 1285 57.4
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1341.6 1261 57.5
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1333.9 1253 56.7
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1333.5 1266 57.3
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1332.0 1272 56.6
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1325.1 1265 57.1
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1323.5 1270 57.2
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1323.1 1259 57.2
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1322.0 1259 57.5
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1320.4 1261 56.8
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1311.6 1275 55.8
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1309.7 1100 63.3
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1308.5 1263 56.7
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1307.4 1269 55.9
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1295.0 1262 56.4
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1293.5 1188 59.0
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1293.1 1257 55.6
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1291.2 1197 56.8
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1287.7 1261 56.6
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1285.4 1243 56.8
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1272.3 1261 55.6
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1268.1 1176 59.9
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1256.1 1255 54.8
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1255.4 1258 54.2
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1251.5 1254 54.1
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1251.1 1266 54.5
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1244.2 1249 54.8
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1239.6 1258 54.1
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1237.6 1266 53.8
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 0.0e+00 1237.2 1289 53.8
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1236.5 1252 54.7
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1231.9 1264 53.6
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1225.7 1286 53.5
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1224.9 1262 53.4
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1216.8 1265 53.2
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1216.1 1264 52.9
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1211.4 1252 52.6
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1211.1 1257 52.9
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1206.8 1265 52.7
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 0.0e+00 1202.2 1270 53.8
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1200.3 1273 52.7
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1196.0 1253 52.4
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1192.9 1210 55.5
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1192.6 1250 52.8
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1191.8 1266 52.8
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1171.0 1267 52.2
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1165.6 1272 52.0
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1157.9 1261 50.8
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1157.1 1266 52.2
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 0.0e+00 1156.7 1271 51.8
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 0.0e+00 1156.4 1013 61.2
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1154.4 1245 52.0
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1152.9 1265 52.0
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 0.0e+00 1152.5 1258 52.3
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1147.5 1187 54.8
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1144.4 1246 51.6
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1138.3 1242 52.5
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 0.0e+00 1124.4 1243 50.9
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 0.0e+00 1123.2 1269 50.7
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 0.0e+00 1121.7 1317 49.6
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 0.0e+00 1116.7 944 63.6
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 0.0e+00 1098.6 1266 49.5
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 0.0e+00 1092.4 919 64.1
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 0.0e+00 1075.1 1253 48.8
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 1.0e-310 1070.5 1213 49.9
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 2.2e-310 1069.3 877 65.7
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 2.1e-308 1062.8 1040 53.9
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 3.3e-306 1055.4 1255 48.6
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 4.2e-269 932.2 981 52.8
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 7.5e-250 868.2 852 56.5
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 1.4e-235 820.8 1003 49.2
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 2.6e-234 816.6 1246 42.0
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 2.5e-229 800.0 1292 39.6
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 2.8e-228 796.6 967 47.5
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 8.4e-225 785.0 905 48.4
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 6.2e-220 768.8 1127 40.7
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.0e-181 641.0 861 42.9
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 1.5e-178 631.3 798 44.4
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 8.5e-169 599.0 576 55.9
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 5.5e-168 596.3 1126 35.4
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 4.8e-164 583.2 833 40.8
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 5.4e-155 553.1 763 41.7
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 5.2e-142 510.0 428 66.1
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 3.1e-134 484.2 637 42.9
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.9e-120 438.3 596 42.3
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 3.0e-113 414.5 458 51.5
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 1.5e-109 402.1 365 60.5
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 3.8e-108 397.5 358 62.3
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 4.2e-107 394.0 347 63.4
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 1.0e-105 389.4 349 63.0
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 1.4e-99 369.0 383 51.2
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 1.0e-92 346.3 236 74.6
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 2.7e-82 311.6 487 36.6
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 1.0e-81 309.7 649 32.7
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 5.7e-80 303.9 391 44.5
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 2.4e-70 271.9 492 35.6
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 2.7e-66 258.5 376 44.1
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 3.2e-59 235.0 346 36.1
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.3e-52 213.0 297 42.1
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 2.7e-50 205.3 308 40.9
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 2.7e-42 178.7 169 56.2
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 9.5e-35 153.7 324 35.8
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 8.3e-23 114.0 119 47.9
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 3.2e-22 112.1 129 46.5
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 4.1e-22 111.7 115 49.6
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 5.4e-22 111.3 119 48.7
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 3.9e-20 105.1 325 31.1
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 6.6e-20 104.4 203 36.0
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 1.1e-19 103.6 119 46.2
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 8.6e-12 77.4 61 59.0
SMO364G0092 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 5.8e-08 64.7 301 23.6
Zm00001eb060820 Zea mays HOM05D000726 ORTHO05D007554 2.2e-07 62.8 142 31.0


User provided reference genes

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