Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G1017 Tripterygium wilfordii HOM05D004086 ORTHO05D004641 0.0e+00 1370.9 699 100.0
Manes.07G068600 Manihot esculenta HOM05D004086 ORTHO05D004641 5.5e-218 761.5 726 57.7
Thecc.01G039100 Theobroma cacao HOM05D004086 ORTHO05D004641 1.7e-206 723.4 714 56.3
Duzib264G0994 Durio zibethinus HOM05D004086 ORTHO05D004641 8.3e-206 721.1 710 56.2
MELO3C017544.2 Cucumis melo HOM05D004086 ORTHO05D004641 4.7e-201 705.3 713 53.6
GSVIVG01018995001 Vitis vinifera HOM05D004086 ORTHO05D004641 7.5e-199 698.0 709 55.3
Ciclev10025048m.g Citrus clementina HOM05D004086 ORTHO05D004641 4.1e-197 692.2 707 54.3
CsaV3_4G005180 Cucumis sativus L. HOM05D004086 ORTHO05D004641 1.3e-195 687.2 713 52.6
CANSAT01G2856 Cannabis sativa HOM05D004086 ORTHO05D004641 1.1e-192 677.6 711 53.7
Potri.007G028600 Populus trichocarpa HOM05D004086 ORTHO05D004641 1.4e-192 677.2 705 54.3
Gohir.A11G185700 Gossypium hirsutum HOM05D004086 ORTHO05D004641 8.9e-192 674.5 724 52.5
Gohir.D11G192200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.4e-189 665.2 717 52.0
Gorai.007G205200 Gossypium raimondii HOM05D004086 ORTHO05D004641 9.2e-189 664.5 717 52.0
Sabra07G0024800 Salix brachista HOM05D004086 ORTHO05D004641 6.6e-187 658.3 734 51.8
Sed0023254 Sechium edule HOM05D004086 ORTHO05D004641 1.9e-186 656.8 722 49.4
ClCG07G009030 Citrullus lanatus HOM05D004086 ORTHO05D004641 7.3e-186 654.8 716 51.8
Gohir.D11G227980 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.6e-185 653.7 715 52.0
QL06p045466 Quercus lobata HOM05D004086 ORTHO05D004641 1.1e-184 651.0 686 53.6
CSS0048181 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 3.8e-182 642.5 705 50.9
CSS0022456 Camellia sinensis var. sinensis HOM05D004086 ORTHO05D004641 4.9e-182 642.1 709 51.2
Dinv39963 Davidia involucrata HOM05D004086 ORTHO05D004641 9.0e-176 621.3 714 50.3
Prupe.7G151600 Prunus persica HOM05D004086 ORTHO05D004641 9.0e-176 621.3 724 50.1
Actinidia36545 Actinidia chinensis HOM05D004086 ORTHO05D004641 9.9e-175 617.8 707 49.4
MD02G1151400 Malus domestica HOM05D004086 ORTHO05D004641 1.7e-174 617.1 715 50.2
TAR628G1622 Trochodendron aralioides HOM05D004086 ORTHO05D004641 1.2e-172 610.9 707 49.6
COL.COLO4_22111 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.6e-172 610.5 704 51.4
Hma1.2p1_0400F.1_g144650 Hydrangea macrophylla HOM05D004086 ORTHO05D004641 4.6e-172 609.0 698 49.0
Gohir.D11G227900 Gossypium hirsutum HOM05D004086 ORTHO05D004641 1.9e-170 603.6 640 52.0
Cc07_g09240 Coffea canephora HOM05D004086 ORTHO05D004641 2.6e-167 593.2 705 47.5
Actinidia12113 Actinidia chinensis HOM05D004086 ORTHO05D004641 7.1e-165 585.1 708 48.9
RcHm_v2.0_Chr2g0102021 Rosa chinensis HOM05D004086 ORTHO05D004641 7.9e-164 581.6 722 49.2
DCAR_025930 Daucus carota HOM05D004086 ORTHO05D004641 6.7e-163 578.6 710 47.6
MSTRG.23544 Avicennia marina HOM05D004086 ORTHO05D004641 8.7e-163 578.2 712 46.2
Glyma.11G009900 Glycine max HOM05D004086 ORTHO05D004641 5.6e-162 575.5 711 47.7
Eucgr.H01260 Eucalyptus grandis HOM05D004086 ORTHO05D004641 7.4e-162 575.1 639 49.1
CiPaw.02G015600 Carya illinoinensis HOM05D004086 ORTHO05D004641 3.1e-160 569.7 702 47.9
THA.LOC104819797 Tarenaya hassleriana HOM05D004086 ORTHO05D004641 6.9e-160 568.5 708 47.5
FAN19G3131 Fragaria x ananassa HOM05D004086 ORTHO05D004641 7.6e-159 565.1 723 47.7
Lalb_Chr20g0123501 Lupinus albus HOM05D004086 ORTHO05D004641 7.6e-159 565.1 719 46.3
FvH4_1g13700 Fragaria vesca HOM05D004086 ORTHO05D004641 2.9e-158 563.1 724 47.4
Ca_00390_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 1.9e-157 560.5 717 45.0
VMungo1215G0116 Vigna mungo HOM05D004086 ORTHO05D004641 2.4e-157 560.1 717 45.0
FAN28G1508 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.3e-155 553.5 733 47.1
Nitab4.5_0008457g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 3.9e-155 552.7 715 46.9
FAN23G2825 Fragaria x ananassa HOM05D004086 ORTHO05D004641 6.7e-155 552.0 743 46.6
FAN26G0470 Fragaria x ananassa HOM05D004086 ORTHO05D004641 2.1e-153 547.0 723 46.9
ECA232G4057 Erigeron canadensis HOM05D004086 ORTHO05D001499 1.1e-152 544.7 703 46.1
Lj5g0019705 Lotus japonicus HOM05D004086 ORTHO05D004641 1.4e-152 544.3 710 44.4
Medtr5g019810 Medicago truncatula HOM05D004086 ORTHO05D004641 1.5e-151 540.8 709 44.9
Phvul.002G040400 Phaseolus vulgaris HOM05D004086 ORTHO05D004641 1.5e-151 540.8 715 46.0
TPR.G18816 Trifolium pratense HOM05D004086 ORTHO05D004641 1.5e-151 540.8 714 45.5
vmacro07910 Vaccinium macrocarpon HOM05D004086 ORTHO05D004641 1.5e-151 540.8 697 45.8
Sp2g19840 Schrenkiella parvula HOM05D004086 ORTHO05D004641 2.6e-151 540.0 710 45.2
Sopen08g027080 Solanum pennellii HOM05D004086 ORTHO05D004641 3.4e-151 539.7 709 45.0
Lj5A533G14 Lonicera japonica HOM05D004086 ORTHO05D004641 4.5e-151 539.3 674 46.0
Solyc08g078600.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 8.4e-150 535.0 709 45.0
EL10Ac7g17738 Beta vulgaris HOM05D004086 ORTHO05D004641 3.2e-149 533.1 701 45.4
PGSC0003DMG400004762 Solanum tuberosum HOM05D004086 ORTHO05D004641 3.5e-148 529.6 708 44.8
Migut.H00181 Erythranthe guttata HOM05D004086 ORTHO05D004641 3.9e-147 526.2 704 43.6
CARHR287960 Cardamine hirsuta HOM05D004086 ORTHO05D004641 5.7e-146 522.3 714 45.1
Thhalv10003751m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 2.0e-143 513.8 711 43.0
CAN.G1058.29 Capsicum annuum HOM05D004086 ORTHO05D004641 1.0e-142 511.5 709 43.6
Nitab4.5_0010593g0010 Nicotiana tabacum HOM05D004086 ORTHO05D004641 1.4e-141 507.7 774 41.1
AT5G49530 Arabidopsis thaliana HOM05D004086 ORTHO05D004641 5.1e-139 499.2 715 43.5
HanXRQChr09g0262111 Helianthus annuus HOM05D004086 ORTHO05D004641 3.3e-138 496.5 701 43.7
BolC7t44527H Brassica oleracea HOM05D004086 ORTHO05D004641 4.3e-138 496.1 724 43.2
Peaxi162Scf00515g00225 Petunia axillaris HOM05D004086 ORTHO05D004641 5.7e-138 495.7 706 44.2
C07p39950 Brassica napus HOM05D004086 ORTHO05D004641 1.7e-137 494.2 716 43.3
Hund05506 Selenicereus undatus HOM05D004086 ORTHO05D004641 2.2e-137 493.8 681 44.1
A06p38290 Brassica napus HOM05D004086 ORTHO05D004641 3.7e-137 493.0 721 42.7
BraA06t26744Z Brassica rapa HOM05D004086 ORTHO05D004641 4.8e-137 492.7 721 42.7
Ah.15g091580 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.8e-136 490.7 676 43.9
Carub.0008s0941 Capsella rubella HOM05D004086 ORTHO05D004641 3.1e-136 490.0 637 44.1
Sopen02g030230 Solanum pennellii HOM05D004086 ORTHO05D004641 1.5e-135 487.6 703 41.5
AUR62008836 Chenopodium quinoa HOM05D004086 ORTHO05D004641 7.7e-135 485.3 675 43.4
Nn5g29538 Nelumbo nucifera HOM05D004086 ORTHO05D004641 2.9e-134 483.4 547 49.2
arahy.Tifrunner.gnm1.ann1.4T6GLU Arachis hypogaea HOM05D004086 ORTHO05D004641 3.2e-133 479.9 714 41.9
Solyc02g085560.3 Solanum lycopersicum HOM05D004086 ORTHO05D004641 4.2e-133 479.6 703 41.3
Atru.chr3.545 Acer truncatum HOM05D004086 ORTHO05D004641 5.5e-133 479.2 580 49.0
Psat2g160960 Pisum sativum HOM05D004086 ORTHO05D004641 1.2e-132 478.0 647 43.1
ECA238G3830 Erigeron canadensis HOM05D004086 ORTHO05D004641 2.1e-132 477.2 660 43.9
DCAR_023357 Daucus carota HOM05D004086 ORTHO05D004641 1.4e-131 474.6 703 41.5
arahy.Tifrunner.gnm1.ann1.FS5W7P Arachis hypogaea HOM05D004086 ORTHO05D004641 3.0e-131 473.4 711 41.9
Rhsim03G0093700 Rhododendron simsii HOM05D004086 ORTHO05D004641 3.9e-131 473.0 738 42.7
AL8G23320 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 5.1e-131 472.6 637 44.3
Haze_02099 Corylus avellana HOM05D004086 ORTHO05D004641 7.0e-128 462.2 856 38.6
Lsat_1_v5_gn_4_150860 Lactuca sativa HOM05D004086 ORTHO05D004641 3.5e-127 459.9 687 41.6
CAN.G358.119 Capsicum annuum HOM05D004086 ORTHO05D004641 3.8e-126 456.4 723 39.4
Aa31LG11G8330 Aethionema arabicum HOM05D004086 ORTHO05D004641 1.1e-125 454.9 715 41.1
AUR62025406 Chenopodium quinoa HOM05D004086 ORTHO05D004641 4.2e-125 453.0 673 41.3
PSO675G7346 Papaver somniferum HOM05D004086 ORTHO05D004641 2.0e-122 444.1 596 45.1
COL.COLO4_14865 Corchorus olitorius HOM05D004086 ORTHO05D004641 1.7e-121 441.0 510 51.4
Aqoxy6G01048 Aquilegia oxysepala HOM05D004086 ORTHO05D004641 4.5e-119 433.0 716 39.1
Haze_15127 Corylus avellana HOM05D004086 ORTHO05D004641 8.0e-116 422.2 467 52.5
Oeu053005.1 Olea europaea HOM05D004086 ORTHO05D004641 2.8e-113 413.7 580 41.4
PSO541G3560 Papaver somniferum HOM05D004086 ORTHO05D004641 3.7e-113 413.3 714 39.8
SpUn0021_0010 Schrenkiella parvula HOM05D004086 ORTHO05D004641 5.2e-107 392.9 515 44.5
Medtr5g026040 Medicago truncatula HOM05D004086 ORTHO05D004641 1.7e-105 387.9 511 43.4
Nitab4.5_0001279g0090 Nicotiana tabacum HOM05D004086 ORTHO05D004641 4.8e-105 386.3 480 47.7
Cpa.g.sc353.3 Carica papaya HOM05D004086 ORTHO05D004641 2.3e-102 377.5 361 56.2
unitig_52.g17585 Utricularia gibba HOM05D004086 ORTHO05D004641 1.8e-99 367.9 597 38.5
HPP92_015988 Vanilla planifolia HOM05D004086 ORTHO05D004641 8.3e-97 359.0 688 37.4
Thhalv10023969m.g Eutrema salsugineum HOM05D004086 ORTHO05D004641 1.3e-94 351.7 522 41.2
Ah.15g091670 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.1e-93 348.6 459 44.4
ATR0064G058 Amborella trichopoda HOM05D004086 ORTHO05D004641 1.0e-91 342.0 745 34.5
TPR.G28496 Trifolium pratense HOM05D004086 ORTHO05D004641 4.0e-91 340.1 499 40.7
MD15G1266000 Malus domestica HOM05D004086 ORTHO05D004641 1.3e-89 335.1 562 40.4
AagrBONN_evm.TU.Sc2ySwM_344.3508 Anthoceros agrestis HOM05D004086 ORTHO05D004641 2.2e-89 334.3 741 33.6
Sc17g0002710 Simmondsia chinensis HOM05D004086 ORTHO05D004641 2.3e-86 324.3 368 47.0
Mapoly0113s0019 Marchantia polymorpha HOM05D004086 ORTHO05D004641 1.5e-85 321.6 769 32.9
Lsat_1_v5_gn_4_150881 Lactuca sativa HOM05D004086 ORTHO05D004641 1.6e-84 318.2 641 35.4
SMO203G0104 Selaginella moellendorffii HOM05D004086 ORTHO05D004641 2.1e-84 317.8 615 36.1
FvH4_2g10200 Fragaria vesca HOM05D004086 ORTHO05D004641 2.3e-83 314.3 495 41.0
Pp3c2_15450 Physcomitrium patens HOM05D004086 ORTHO05D004641 2.3e-83 314.3 725 34.1
AL5G27650 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 5.8e-82 309.7 494 39.9
CBR_g22032 Chara braunii HOM05D004086 ORTHO05D004641 6.4e-81 306.2 690 32.5
CDE05G2435 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 1.2e-79 302.0 408 44.1
CBR_g50911 Chara braunii HOM05D004086 ORTHO05D004641 1.9e-77 294.7 702 32.5
CBR_g50913 Chara braunii HOM05D004086 ORTHO05D004641 1.9e-77 294.7 702 32.5
CDE10G1264 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 5.8e-74 283.1 705 33.9
Nitab4.5_0004445g0020 Nicotiana tabacum HOM05D004086 ORTHO05D004641 8.4e-65 252.7 345 41.2
Ca_29955_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 9.3e-56 222.6 373 35.7
HPP92_026151 Vanilla planifolia HOM05D004086 ORTHO05D004641 4.3e-53 213.8 440 34.1
CARHR050710 Cardamine hirsuta HOM05D004086 ORTHO05D004641 2.4e-48 198.0 218 47.7
Haze_02100 Corylus avellana HOM05D004086 ORTHO05D004641 3.0e-46 191.0 260 47.3
FAN24G1278 Fragaria x ananassa HOM05D004086 ORTHO05D004641 3.1e-43 181.0 477 32.3
BcaC03g17736 Brassica carinata HOM05D004086 ORTHO05D004641 2.6e-42 177.9 263 41.1
AL253U10010 Arabidopsis lyrata HOM05D004086 ORTHO05D004641 3.8e-41 174.1 205 47.3
Zm00001eb269010 Zea mays HOM05D004086 ORTHO05D004641 4.9e-41 173.7 224 46.0
Cpa.g.sc353.1 Carica papaya HOM05D004086 ORTHO05D004641 1.1e-40 172.6 236 48.7
A02p38220 Brassica napus HOM05D004086 ORTHO05D004641 4.2e-40 170.6 217 44.7
CDE10G0302 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.0e-38 164.5 248 45.2
Haze_15116 Corylus avellana HOM05D004086 ORTHO05D004641 1.5e-37 162.2 241 44.4
PGSC0003DMG400012686 Solanum tuberosum HOM05D004086 ORTHO05D004641 2.1e-36 158.3 203 39.9
CDE10G0017 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 2.8e-36 157.9 232 42.7
Oeu053017.4 Olea europaea HOM05D004086 ORTHO05D004641 5.3e-35 153.7 378 30.7
PSO017G0414 Papaver somniferum HOM05D004086 ORTHO05D004641 1.0e-33 149.4 457 30.4
SEGI_33702 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 5.5e-32 143.7 332 33.7
C02p57460 Brassica napus HOM05D004086 ORTHO05D004641 1.0e-30 139.4 263 36.1
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 3.0e-30 137.9 225 38.2
CDE05G1436 Ceratophyllum demersum HOM05D004086 ORTHO05D004641 3.1e-27 127.9 154 41.6
Zm00001eb269020 Zea mays HOM05D004086 ORTHO05D004641 3.1e-27 127.9 355 31.5
Lj4A239T53 Lonicera japonica HOM05D004086 ORTHO05D004641 2.0e-26 125.2 130 48.5
Oeu053007.1 Olea europaea HOM05D004086 ORTHO05D004641 5.9e-26 123.6 314 33.8
SHI06750 Sapria himalayana HOM05D004086 ORTHO05D004641 1.5e-21 109.0 162 38.9
Gohir.A11G236200 Gossypium hirsutum HOM05D004086 ORTHO05D004641 5.7e-21 107.1 89 58.4
SHI06749 Sapria himalayana HOM05D004086 ORTHO05D004641 2.8e-20 104.8 86 55.8
BcaB07g34160 Brassica carinata HOM05D004086 ORTHO05D004641 8.2e-20 103.2 134 42.5
Ah.15g091620 Amaranthus hybridus HOM05D004086 ORTHO05D004641 1.1e-19 102.8 103 54.4
Glyma.01G232951 Glycine max HOM05D001514 ORTHO05D002956 5.9e-18 97.1 233 30.5
Oeu014919.1 Olea europaea HOM05D004086 ORTHO05D004641 1.7e-17 95.5 627 24.1
BolC2t11821H Brassica oleracea HOM05D004086 ORTHO05D004641 2.2e-17 95.1 112 46.4
Sc17g0002700 Simmondsia chinensis HOM05D004086 ORTHO05D004641 5.0e-17 94.0 103 47.6
MCO01G289 Micromonas commoda HOM05D004086 ORTHO05D004641 7.2e-16 90.1 634 23.0
SEGI_36884 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.4e-14 85.9 188 35.1
Ca_29956_v3 Cicer arietinum L. HOM05D004086 ORTHO05D004641 8.8e-14 83.2 101 46.5
SEGI_29880 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 1.5e-13 82.4 79 50.6
QL06p009809 Quercus lobata HOM05D004086 ORTHO05D004641 2.6e-13 81.6 81 54.3
SEGI_38277 Sequoiadendron giganteum HOM05D004086 ORTHO05D004641 3.3e-13 81.3 163 34.4
HPP92_026150 Vanilla planifolia HOM05D004086 ORTHO05D004641 7.4e-13 80.1 106 40.6
Cre10.g454650 Chlamydomonas reinhardtii HOM05D004086 ORTHO05D004641 6.3e-12 77.0 151 32.5
MELO3C034917.2 Cucumis melo HOM05D004086 ORTHO05D004641 6.3e-12 77.0 58 58.6
SEGI_37045 Sequoiadendron giganteum HOM05D037714 ORTHO05D004641 1.0e-09 69.7 139 33.1
Zm00001eb176250 Zea mays HOM05D004086 ORTHO05D004641 1.5e-08 65.9 145 33.1
HPP92_015986 Vanilla planifolia HOM05D004086 ORTHO05D004641 7.2e-08 63.5 116 36.2
SHI06747 Sapria himalayana HOM05D012376 ORTHO05D006507 1.2e-07 62.8 142 38.0
CARHR050700 Cardamine hirsuta HOM05D004086 ORTHO05D004641 1.4e-06 59.3 44 56.8
PRCOL_00000416 Prasinoderma coloniale HOM05D004086 ORTHO05D004641 2.3e-06 58.5 332 25.3


User provided reference genes

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