Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 5.1e-248 860.5 407 100.0
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 5.7e-223 777.3 400 91.5
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 4.8e-222 774.2 399 90.7
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 1.8e-221 772.3 402 90.3
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.2e-220 769.6 399 90.0
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.2e-220 769.6 399 90.0
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 1.2e-220 769.6 399 90.0
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 1.2e-220 769.6 407 90.4
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 2.2e-219 765.4 400 89.8
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 1.1e-218 763.1 403 90.1
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 1.1e-218 763.1 402 88.6
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 1.4e-218 762.7 401 88.8
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 2.5e-218 761.9 402 88.8
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 3.2e-218 761.5 404 88.6
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 9.4e-218 760.0 398 89.2
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 2.1e-217 758.8 399 89.2
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 3.6e-217 758.1 397 88.4
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 3.6e-217 758.1 397 88.7
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 8.0e-217 756.9 401 88.3
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 8.0e-217 756.9 403 89.1
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 1.0e-216 756.5 406 88.2
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 2.3e-216 755.4 399 88.2
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 3.0e-216 755.0 404 87.4
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 6.7e-216 753.8 404 87.6
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 8.8e-216 753.4 404 87.6
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 8.8e-216 753.4 418 84.9
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 1.5e-215 752.7 400 88.2
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 2.0e-215 752.3 404 88.1
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 2.0e-215 752.3 401 87.3
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 2.0e-215 752.3 404 87.4
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 2.0e-215 752.3 407 87.2
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 2.6e-215 751.9 397 89.7
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 2.6e-215 751.9 402 88.6
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 3.3e-215 751.5 414 87.4
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 3.3e-215 751.5 401 88.0
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 3.3e-215 751.5 404 87.6
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 4.4e-215 751.1 398 88.2
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 4.4e-215 751.1 403 87.3
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 7.4e-215 750.4 401 87.5
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 7.4e-215 750.4 401 87.8
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 1.3e-214 749.6 390 90.3
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 4.8e-214 747.7 405 86.9
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 6.3e-214 747.3 404 87.1
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 6.3e-214 747.3 375 94.4
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 8.2e-214 746.9 409 86.1
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 1.1e-213 746.5 409 87.0
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 7.0e-213 743.8 410 85.4
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 9.1e-213 743.4 402 86.3
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 1.2e-212 743.0 413 85.2
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 1.6e-212 742.7 399 86.2
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 1.7e-211 739.2 399 84.5
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 2.2e-211 738.8 399 84.2
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 5.0e-211 737.6 399 84.7
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 6.5e-211 737.3 403 86.8
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 8.5e-211 736.9 433 82.0
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 8.5e-211 736.9 402 86.8
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 1.9e-210 735.7 399 84.2
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 1.9e-210 735.7 387 88.9
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 9.4e-210 733.4 403 85.6
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 1.2e-209 733.0 410 84.9
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 8.0e-209 730.3 444 80.4
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 4.0e-208 728.0 402 84.6
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 4.0e-208 728.0 402 84.6
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 6.7e-208 727.2 389 87.1
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 2.6e-207 725.3 402 85.3
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 2.6e-207 725.3 391 87.5
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 2.6e-207 725.3 390 86.7
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 3.3e-207 724.9 395 86.3
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 4.4e-207 724.5 397 85.1
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 9.7e-207 723.4 403 83.9
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 1.7e-206 722.6 399 83.7
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 2.8e-206 721.8 402 83.6
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 3.7e-206 721.5 399 84.0
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 6.3e-206 720.7 414 82.1
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 6.3e-206 720.7 414 83.8
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 3.5e-204 714.9 402 85.1
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 1.3e-203 713.0 401 83.3
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 2.9e-203 711.8 400 85.5
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 3.8e-203 711.4 399 83.7
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 6.5e-203 710.7 402 84.6
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 5.5e-202 707.6 399 81.2
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 9.4e-202 706.8 383 84.6
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 9.4e-202 706.8 383 84.6
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 1.2e-201 706.4 391 84.4
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 1.6e-201 706.1 402 83.8
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 3.6e-201 704.9 419 81.1
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 1.8e-200 702.6 413 81.6
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 6.8e-200 700.7 396 84.1
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 3.4e-199 698.4 385 83.9
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 1.7e-198 696.0 400 82.2
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 6.5e-195 684.1 386 84.5
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 1.5e-194 682.9 406 79.3
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 4.4e-191 671.4 379 84.4
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 1.7e-190 669.5 384 80.2
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 3.7e-190 668.3 384 79.9
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 4.1e-189 664.8 384 79.4
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 5.4e-189 664.5 403 77.9
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 5.4e-189 664.5 402 79.6
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 2.0e-188 662.5 385 81.6
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 2.7e-188 662.1 413 79.4
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 1.5e-186 656.4 372 80.6
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 2.5e-186 655.6 399 80.2
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 1.2e-185 653.3 357 84.9
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 3.0e-184 648.7 402 78.9
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 4.9e-182 641.3 399 77.2
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 8.0e-177 624.0 353 81.0
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 2.3e-176 622.5 341 84.8
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 4.1e-173 611.7 328 86.0
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 4.6e-172 608.2 402 73.4
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 6.2e-169 597.8 393 69.7
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 2.2e-166 589.3 398 69.8
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 1.9e-165 586.3 394 69.3
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 9.2e-165 583.9 394 68.3
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 2.8e-161 572.4 305 87.9
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 2.9e-158 562.4 306 86.6
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 2.7e-156 555.8 306 86.3
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 5.2e-152 541.6 345 74.8
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 5.8e-151 538.1 393 64.9
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 2.4e-149 532.7 400 63.8
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 3.7e-121 439.1 242 86.4
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 3.3e-106 389.4 266 67.3
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 1.1e-101 374.4 207 85.0
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 8.5e-94 348.2 186 85.5
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.3e-86 324.3 218 75.2
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 3.8e-86 322.8 171 87.1
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 8.5e-86 321.6 372 51.3
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 2.0e-82 310.5 160 88.8
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 6.6e-78 295.4 224 62.5
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 1.5e-77 294.3 434 39.6
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 2.7e-71 273.5 146 86.3
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 8.6e-62 241.9 141 79.4
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 1.2e-58 231.5 172 62.8
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 2.5e-45 187.2 190 54.2
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.6e-31 141.4 72 90.3
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 3.0e-22 110.5 198 40.9
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 9.3e-16 89.0 269 29.4
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 3.5e-07 60.5 51 58.8


User provided reference genes

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