Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G0902 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 8.0e-163 577.0 287 100.0
TWI09G1485 Tripterygium wilfordii HOM05D008171 ORTHO05D006541 1.2e-86 323.9 301 61.1
TWI73G1043 Tripterygium wilfordii HOM05D008729 ORTHO05D006541 2.6e-52 209.9 233 57.9
Manes.03G156600 Manihot esculenta HOM05D008171 ORTHO05D006541 1.7e-43 180.6 290 43.8
Duzib177G0581 Durio zibethinus HOM05D008171 ORTHO05D006541 5.2e-37 159.1 306 40.2
Gohir.A11G241700 Gossypium hirsutum HOM05D008171 ORTHO05D006541 3.1e-34 149.8 278 41.4
Gorai.007G269300 Gossypium raimondii HOM05D008171 ORTHO05D006541 1.2e-33 147.9 278 41.4
Gohir.D11G251100 Gossypium hirsutum HOM05D008171 ORTHO05D006541 7.7e-33 145.2 304 39.1
VMungo1383G3710 Vigna mungo HOM05D008729 ORTHO05D006541 2.5e-31 140.2 278 39.9
Glyma.18G253500 Glycine max HOM05D008729 ORTHO05D006541 4.2e-31 139.4 210 43.3
RcHm_v2.0_Chr4g0396051 Rosa chinensis HOM05D013250 ORTHO05D006541 9.4e-31 138.3 250 41.2
Phvul.008G026200 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 6.1e-30 135.6 237 39.7
Potri.004G028100 Populus trichocarpa HOM05D008171 ORTHO05D006541 6.1e-30 135.6 278 37.4
Sabra04G0016000 Salix brachista HOM05D008171 ORTHO05D006541 1.4e-29 134.4 294 37.4
Thecc.04G268400 Theobroma cacao HOM05D008171 ORTHO05D006541 1.8e-29 134.0 277 36.8
Cpa.g.sc59.27 Carica papaya HOM05D008171 ORTHO05D006541 8.8e-29 131.7 319 36.1
ClCG09G011900 Citrullus lanatus HOM05D008171 ORTHO05D006541 3.4e-28 129.8 260 41.5
Cfa014809 Carpinus fangiana HOM05D008171 ORTHO05D006541 1.7e-27 127.5 309 35.3
Haze_11490 Corylus avellana HOM05D008171 ORTHO05D006541 1.7e-27 127.5 316 35.1
Phvul.008G045500 Phaseolus vulgaris HOM05D008729 ORTHO05D006541 2.8e-27 126.7 275 36.0
COL.COLO4_08914 Corchorus olitorius HOM05D008171 ORTHO05D006541 4.8e-27 125.9 296 36.8
Dinv29788 Davidia involucrata HOM05D008171 ORTHO05D006541 7.0e-26 122.1 180 45.6
Actinidia31699 Actinidia chinensis HOM05D008171 ORTHO05D006541 1.6e-25 120.9 296 35.1
Atru.chr3.807 Acer truncatum HOM05D008171 ORTHO05D006541 2.7e-25 120.2 260 36.5
Rhsim07G0050800 Rhododendron simsii HOM05D008171 ORTHO05D006541 3.5e-25 119.8 234 38.5
FAN22G0719 Fragaria x ananassa HOM05D013250 ORTHO05D006541 5.9e-25 119.0 225 39.1
Prupe.1G051700 Prunus persica HOM05D013250 ORTHO05D006541 5.9e-25 119.0 233 37.8
MD16G1230200 Malus domestica HOM05D013250 ORTHO05D006541 3.8e-24 116.3 242 36.8
Lj1g0024023 Lotus japonicus HOM05D008729 ORTHO05D006541 9.5e-23 111.7 203 40.4
Rhsim06G0142400 Rhododendron simsii HOM05D008729 ORTHO05D006541 9.5e-23 111.7 178 43.8
SGA_v2.0_scaffold577G53017 Striga asiatica HOM05D014524 ORTHO05D006541 9.5e-23 111.7 327 32.7
COL.COLO4_36427 Corchorus olitorius HOM05D008171 ORTHO05D006541 2.1e-22 110.5 188 38.8
arahy.Tifrunner.gnm1.ann1.R8XUDN Arachis hypogaea HOM05D008729 ORTHO05D006541 4.7e-22 109.4 262 35.9
BraA05t20241Z Brassica rapa HOM05D008171 ORTHO05D006541 1.4e-21 107.8 251 33.5
arahy.Tifrunner.gnm1.ann1.YJLF6P Arachis hypogaea HOM05D008729 ORTHO05D006541 2.3e-21 107.1 341 32.6
BcaB02g10481 Brassica carinata HOM05D008171 ORTHO05D006541 3.0e-21 106.7 254 34.6
Ca_04035_v3 Cicer arietinum L. HOM05D008729 ORTHO05D006541 4.0e-21 106.3 200 38.0
SGA_v2.0_scaffold31G12622 Striga asiatica HOM05D014524 ORTHO05D006541 4.0e-21 106.3 336 30.1
Carub.0004s1355 Capsella rubella HOM05D008171 ORTHO05D006541 6.8e-21 105.5 294 31.0
Sabra18G0128500 Salix brachista HOM05D008171 ORTHO05D006541 6.8e-21 105.5 172 43.6
Thhalv10016999m.g Eutrema salsugineum HOM05D008171 ORTHO05D006541 1.2e-20 104.8 297 30.0
PGR119G2083 Punica granatum HOM05D008729 ORTHO05D006541 2.6e-20 103.6 267 33.0
Potri.018G147100 Populus trichocarpa HOM05D008729 ORTHO05D006541 3.4e-20 103.2 186 39.8
PGSC0003DMG400000820 Solanum tuberosum HOM05D008171 ORTHO05D006541 7.5e-20 102.1 132 47.7
THA.LOC104826159 Tarenaya hassleriana HOM05D008171 ORTHO05D006541 7.5e-20 102.1 246 35.0
QL06p021862 Quercus lobata HOM05D008171 ORTHO05D006541 9.8e-20 101.7 248 33.9
AT2G32235 Arabidopsis thaliana HOM05D008171 ORTHO05D006541 1.3e-19 101.3 300 32.0
FAN12G1247 Fragaria x ananassa HOM05D013250 ORTHO05D006541 1.3e-19 101.3 190 38.4
A05p13010 Brassica napus HOM05D008171 ORTHO05D006541 1.7e-19 100.9 249 33.7
Dinv43748 Davidia involucrata HOM05D008729 ORTHO05D006541 1.7e-19 100.9 263 33.1
FvH4_4g05130 Fragaria vesca HOM05D013250 ORTHO05D006541 1.7e-19 100.9 190 38.4
Cc03_g06490 Coffea canephora HOM05D008171 ORTHO05D006541 3.7e-19 99.8 266 33.8
Migut.N00307 Erythranthe guttata HOM05D014524 ORTHO05D006541 6.3e-19 99.0 276 32.2
CsaV3_3G049130 Cucumis sativus L. HOM05D008171 ORTHO05D006541 1.1e-18 98.2 235 37.0
MSTRG.14227 Avicennia marina HOM05D014524 ORTHO05D006541 1.8e-18 97.4 250 34.8
C04p17400 Brassica napus HOM05D008171 ORTHO05D006541 1.8e-18 97.4 256 31.6
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 1.8e-18 97.4 256 31.6
AL4G27600 Arabidopsis lyrata HOM05D008171 ORTHO05D006541 5.4e-18 95.9 331 29.3
BcaC01g05917 Brassica carinata HOM05D008171 ORTHO05D006541 1.2e-17 94.7 274 30.7
Sopen05g005780 Solanum pennellii HOM05D008171 ORTHO05D006541 1.2e-17 94.7 92 53.3
A03p18070 Brassica napus HOM05D008171 ORTHO05D006541 1.6e-17 94.4 283 30.4
CANSAT78G0015 Cannabis sativa HOM05D008171 ORTHO05D006541 2.0e-17 94.0 326 30.7
Lalb_Chr03g0040281 Lupinus albus HOM05D008729 ORTHO05D006541 2.7e-17 93.6 248 34.7
Eucgr.F04204 Eucalyptus grandis HOM05D008729 ORTHO05D006541 5.9e-17 92.4 139 44.6
SalBow8G4971 Salvia bowleyana HOM05D014524 ORTHO05D006541 1.0e-16 91.7 233 34.3
Psat3g195600 Pisum sativum HOM05D008729 ORTHO05D006541 1.7e-16 90.9 202 35.6
CiPaw.01G175900 Carya illinoinensis HOM05D008171 ORTHO05D006541 3.9e-16 89.7 82 51.2
Sed0013719 Sechium edule HOM05D008171 ORTHO05D006541 5.0e-16 89.4 247 32.0
Nitab4.5_0004705g0050 Nicotiana tabacum HOM05D008171 ORTHO05D006541 6.6e-16 89.0 128 41.4
Prupe.1G335500 Prunus persica HOM05D008171 ORTHO05D006541 8.6e-16 88.6 202 35.1
TPR.G16999 Trifolium pratense HOM05D008729 ORTHO05D006541 1.5e-15 87.8 221 31.7
FAN17G2546 Fragaria x ananassa HOM05D013250 ORTHO05D006541 2.5e-15 87.0 195 37.9
Glyma.09G242100 Glycine max HOM05D008729 ORTHO05D006541 2.5e-15 87.0 141 45.4
Cc00_g01630 Coffea canephora HOM05D008729 ORTHO05D006541 5.6e-15 85.9 99 47.5
SalBow3G3100 Salvia bowleyana HOM05D014524 ORTHO05D006541 5.6e-15 85.9 214 30.8
BcaB01g03996 Brassica carinata HOM05D008171 ORTHO05D006541 1.6e-14 84.3 269 29.0
DCAR_002271 Daucus carota HOM05D008729 ORTHO05D006541 3.6e-14 83.2 271 31.7
Nitab4.5_0009780g0020 Nicotiana tabacum HOM05D008171 ORTHO05D006541 3.6e-14 83.2 127 40.9
MD13G1018300 Malus domestica HOM05D008171 ORTHO05D006541 8.0e-14 82.0 255 29.0
CARHR126020 Cardamine hirsuta HOM05D008171 ORTHO05D006541 2.3e-13 80.5 293 27.3
BolC3t14492H Brassica oleracea HOM05D008171 ORTHO05D006541 8.9e-13 78.6 296 27.7
TPR.G6386 Trifolium pratense HOM05D008729 ORTHO05D006541 8.9e-13 78.6 203 33.0
C03p21100 Brassica napus HOM05D008171 ORTHO05D006541 4.4e-12 76.3 273 28.9
Ciclev10005715m.g Citrus clementina HOM05D008171 ORTHO05D006541 4.4e-12 76.3 237 34.6
Thecc.05G282200 Theobroma cacao HOM05D008171 ORTHO05D006541 7.5e-12 75.5 74 45.9
Atru.chr6.2064 Acer truncatum HOM05D008171 ORTHO05D006541 2.2e-11 73.9 218 32.6
Hma1.2p1_1240F.1_g269530 Hydrangea macrophylla HOM05D008729 ORTHO05D006541 2.2e-11 73.9 84 46.4
Medtr7g007830 Medicago truncatula HOM05D008729 ORTHO05D006541 2.9e-11 73.6 275 28.7
Actinidia32333 Actinidia chinensis HOM05D008171 ORTHO05D006541 3.7e-11 73.2 217 31.8
COL.COLO4_37412 Corchorus olitorius HOM05D008171 ORTHO05D006541 4.9e-11 72.8 52 59.6
Duzib106G2051 Durio zibethinus HOM05D008171 ORTHO05D006541 8.3e-11 72.0 179 36.3
Medtr5g069720 Medicago truncatula HOM05D008729 ORTHO05D006541 1.1e-10 71.6 271 29.2
Medtr4g072520 Medicago truncatula HOM05D008729 ORTHO05D006541 1.9e-10 70.9 219 31.5
Oeu061870.1 Olea europaea HOM05D008729 ORTHO05D006541 7.0e-10 68.9 113 38.9
FAN07G2840 Fragaria x ananassa HOM05D004513 ORTHO05D005459 1.6e-09 67.8 135 31.9
Medtr4g072710 Medicago truncatula HOM05D008729 ORTHO05D006541 1.6e-09 67.8 221 31.2
Medtr5g069420 Medicago truncatula HOM05D008729 ORTHO05D006541 1.6e-09 67.8 274 30.7
Sp4g14600 Schrenkiella parvula HOM05D008171 ORTHO05D006541 2.0e-09 67.4 331 23.3
FAN07G0121 Fragaria x ananassa HOM05D022272 ORTHO05D006541 2.7e-09 67.0 120 31.7
TPR.G30636 Trifolium pratense HOM05D008729 ORTHO05D006541 4.6e-09 66.2 46 52.2
Medtr4g072430 Medicago truncatula HOM05D008729 ORTHO05D006541 7.8e-09 65.5 227 30.4
CAN.G184.75 Capsicum annuum HOM05D001868 ORTHO05D009153 1.0e-08 65.1 117 36.8
FAN12G2236 Fragaria x ananassa HOM05D022272 ORTHO05D006541 2.3e-08 63.9 124 30.6
FvH4_4g33320 Fragaria vesca HOM05D022272 ORTHO05D006541 5.0e-08 62.8 123 30.9
FAN22G1062 Fragaria x ananassa HOM05D022272 ORTHO05D006541 5.0e-08 62.8 123 30.1
Medtr4g052440 Medicago truncatula HOM05D008729 ORTHO05D006541 5.0e-08 62.8 274 27.7
Medtr5g068870 Medicago truncatula HOM05D008729 ORTHO05D006541 6.6e-08 62.4 212 29.7
Medtr5g069080 Medicago truncatula HOM05D008729 ORTHO05D006541 8.6e-08 62.0 45 48.9
Medtr5g008380 Medicago truncatula HOM05D008729 ORTHO05D006541 1.1e-07 61.6 249 29.7
FAN17G0494 Fragaria x ananassa HOM05D022272 ORTHO05D006541 1.9e-07 60.8 49 53.1
RcHm_v2.0_Chr4g0442521 Rosa chinensis HOM05D013250 ORTHO05D006541 1.9e-07 60.8 49 53.1
DCAR_027373 Daucus carota HOM05D008171 ORTHO05D006541 4.3e-07 59.7 190 30.5
SalBow3G0463 Salvia bowleyana HOM05D014524 ORTHO05D006541 4.3e-07 59.7 29 82.8
MELO3C003414.2 Cucumis melo HOM05D008171 ORTHO05D006541 5.6e-07 59.3 93 35.5
TPR.G32534 Trifolium pratense HOM05D008729 ORTHO05D006541 7.3e-07 58.9 44 52.3
Cpa.g.sc59.32 Carica papaya HOM05D008171 ORTHO05D006541 1.2e-06 58.2 67 50.7
Nitab4.5_0000575g0210 Nicotiana tabacum HOM05D008171 ORTHO05D006541 2.1e-06 57.4 92 34.8
Oeu023142.1 Olea europaea HOM05D008171 ORTHO05D006541 2.1e-06 57.4 147 37.4


User provided reference genes

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