Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G0780 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.5e-47 192.6 99 100.0
TWI73G0411 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 5.4e-34 147.5 100 81.0
TWI53G1738 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 2.5e-31 138.7 99 76.8
TWI53G1893 Tripterygium wilfordii HOM05D003940 ORTHO05D004461 1.6e-30 136.0 99 75.8
Ciclev10006290m.g Citrus clementina HOM05D003940 ORTHO05D004461 4.9e-19 97.8 99 57.6
Glyma.20G202600 Glycine max HOM05D003940 ORTHO05D004461 4.9e-19 97.8 100 59.0
CiPaw.01G188000 Carya illinoinensis HOM05D003940 ORTHO05D004461 8.3e-19 97.1 110 55.5
Glyma.10G188200 Glycine max HOM05D003940 ORTHO05D004461 1.9e-18 95.9 99 57.6
QL06p016655 Quercus lobata HOM05D003940 ORTHO05D004461 1.9e-18 95.9 103 55.3
Lj5g0009696 Lotus japonicus HOM05D003940 ORTHO05D004461 5.4e-18 94.4 103 56.3
Lalb_Chr19g0128361 Lupinus albus HOM05D003940 ORTHO05D004461 2.7e-17 92.0 94 57.4
GSVIVG01027728001 Vitis vinifera HOM05D000515 ORTHO05D003188 2.7e-17 92.0 93 55.9
CSS0017531 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 3.5e-17 91.7 93 55.9
Phvul.007G129450 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 4.6e-17 91.3 99 54.5
Manes.15G038200 Manihot esculenta HOM05D003940 ORTHO05D004461 6.0e-17 90.9 110 54.5
Sc19g0003500 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.0e-16 90.1 92 60.9
TPR.G26431 Trifolium pratense HOM05D006440 ORTHO05D003987 1.0e-16 90.1 101 54.5
Psat6g132880 Pisum sativum HOM05D003940 ORTHO05D004461 1.3e-16 89.7 100 55.0
Lalb_Chr21g0312371 Lupinus albus HOM05D003940 ORTHO05D004461 2.3e-16 89.0 99 52.5
Sabra10G0034600 Salix brachista HOM05D003940 ORTHO05D004461 2.3e-16 89.0 102 52.9
COL.COLO4_15828 Corchorus olitorius HOM05D003940 ORTHO05D004461 3.0e-16 88.6 100 52.0
Cpa.g.sc44.90 Carica papaya HOM05D003940 ORTHO05D004461 3.9e-16 88.2 95 53.7
Duzib151G0370 Durio zibethinus HOM05D003940 ORTHO05D004461 5.0e-16 87.8 103 52.4
Potri.010G073900 Populus trichocarpa HOM05D003940 ORTHO05D004461 5.0e-16 87.8 104 52.9
AUR62002262 Chenopodium quinoa HOM05D003940 ORTHO05D004461 6.6e-16 87.4 89 52.8
Hma1.2p1_0986F.1_g244370 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 6.6e-16 87.4 99 52.5
Actinidia04462 Actinidia chinensis HOM05D003940 ORTHO05D004461 1.5e-15 86.3 89 50.6
HanXRQChr03g0092241 Helianthus annuus HOM05D003940 ORTHO05D004461 1.5e-15 86.3 96 57.3
CSS0034657 Camellia sinensis var. sinensis HOM05D003940 ORTHO05D004461 2.5e-15 85.5 89 53.9
Dinv44656 Davidia involucrata HOM05D003940 ORTHO05D004461 3.3e-15 85.1 108 50.0
MD13G1210200 Malus domestica HOM05D003940 ORTHO05D004461 3.3e-15 85.1 112 48.2
Sc25g0004050 Simmondsia chinensis HOM05D003940 ORTHO05D004461 3.3e-15 85.1 85 58.8
Atru.chr4.2138 Acer truncatum HOM05D003940 ORTHO05D004461 4.3e-15 84.7 110 48.2
PGR031G1035 Punica granatum HOM05D003940 ORTHO05D004461 4.3e-15 84.7 91 57.1
Thecc.04G250000 Theobroma cacao HOM05D003940 ORTHO05D004461 4.3e-15 84.7 100 51.0
Sed0016632 Sechium edule HOM05D003940 ORTHO05D004461 5.6e-15 84.3 108 50.9
Cfa008351 Carpinus fangiana HOM05D003940 ORTHO05D004461 9.5e-15 83.6 101 54.5
AUR62015478 Chenopodium quinoa HOM05D000816 ORTHO05D005265 9.5e-15 83.6 89 52.8
Gohir.A09G225100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 9.5e-15 83.6 102 49.0
Gorai.006G248700 Gossypium raimondii HOM05D003940 ORTHO05D004461 9.5e-15 83.6 102 49.0
Ca_09815_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 1.6e-14 82.8 103 51.5
Gohir.D09G226800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.6e-14 82.8 102 49.0
Potri.008G164801 Populus trichocarpa HOM05D003940 ORTHO05D004461 1.6e-14 82.8 101 52.5
Rhsim04G0188200 Rhododendron simsii HOM05D003940 ORTHO05D004461 1.6e-14 82.8 90 50.0
Duzib212G0271 Durio zibethinus HOM05D003940 ORTHO05D004461 2.1e-14 82.4 100 50.0
Prupe.1G034700 Prunus persica HOM05D003940 ORTHO05D004461 2.8e-14 82.0 111 46.8
EL10Ac3g05913 Beta vulgaris HOM05D003940 ORTHO05D004461 4.7e-14 81.3 87 54.0
Cc03_g05120 Coffea canephora HOM05D003940 ORTHO05D004461 4.7e-14 81.3 108 48.1
Solyc06g053700.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 4.7e-14 81.3 103 52.4
Sopen06g018810 Solanum pennellii HOM05D003940 ORTHO05D004461 4.7e-14 81.3 103 52.4
CANSAT78G1835 Cannabis sativa HOM05D003940 ORTHO05D004461 6.2e-14 80.9 114 47.4
MSTRG.9915 Avicennia marina HOM05D003940 ORTHO05D004461 8.1e-14 80.5 97 53.6
Glyma.10G008021 Glycine max HOM05D003940 ORTHO05D004461 1.1e-13 80.1 99 50.5
Nitab4.5_0000342g0180 Nicotiana tabacum HOM05D003940 ORTHO05D004461 1.1e-13 80.1 99 50.5
TPR.G15869 Trifolium pratense HOM05D003940 ORTHO05D004461 1.1e-13 80.1 102 47.1
HanXRQChr13g0425481 Helianthus annuus HOM05D003940 ORTHO05D004461 1.4e-13 79.7 88 52.3
Hma1.2p1_0310F.1_g120730 Hydrangea macrophylla HOM05D003940 ORTHO05D004461 1.8e-13 79.3 109 46.8
PGSC0003DMG400016324 Solanum tuberosum HOM05D003940 ORTHO05D004461 1.8e-13 79.3 103 51.5
Haze_11334 Corylus avellana HOM05D003940 ORTHO05D004461 2.3e-13 79.0 107 50.5
Migut.N00250 Erythranthe guttata HOM05D003940 ORTHO05D004461 3.1e-13 78.6 84 53.6
Lj6g0004880 Lotus japonicus HOM05D003940 ORTHO05D004461 3.1e-13 78.6 98 52.0
Phvul.007G272100 Phaseolus vulgaris HOM05D003940 ORTHO05D004461 4.0e-13 78.2 99 48.5
ClCG06G006840 Citrullus lanatus HOM05D003940 ORTHO05D004461 6.8e-13 77.4 96 49.0
Peaxi162Scf00325g00012 Petunia axillaris HOM05D003940 ORTHO05D004461 6.8e-13 77.4 101 47.5
Peaxi162Scf00325g00015 Petunia axillaris HOM05D003940 ORTHO05D004461 6.8e-13 77.4 101 47.5
Psat6g138240 Pisum sativum HOM05D003940 ORTHO05D004461 6.8e-13 77.4 97 45.4
Migut.G00452 Erythranthe guttata HOM05D003940 ORTHO05D004461 8.9e-13 77.0 83 51.8
Gohir.D10G154400 Gossypium hirsutum HOM05D003940 ORTHO05D004461 8.9e-13 77.0 100 50.0
Gorai.011G172300 Gossypium raimondii HOM05D003940 ORTHO05D004461 8.9e-13 77.0 100 50.0
Nitab4.5_0007234g0020 Nicotiana tabacum HOM05D003940 ORTHO05D004461 2.0e-12 75.9 99 48.5
SGA_v2.0_scaffold101G29832 Striga asiatica HOM05D003940 ORTHO05D004461 2.0e-12 75.9 95 50.5
vmacro08448 Vaccinium macrocarpon HOM05D003940 ORTHO05D004461 2.0e-12 75.9 89 47.2
VMungo0720G0726 Vigna mungo HOM05D003940 ORTHO05D004461 2.0e-12 75.9 98 46.9
THA.LOC104822808 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.4e-12 75.1 105 48.6
CiPaw.02G114800 Carya illinoinensis HOM05D003940 ORTHO05D004461 4.4e-12 74.7 109 48.6
CsaV3_3G012380 Cucumis sativus L. HOM05D000244 ORTHO05D000179 5.8e-12 74.3 98 39.8
Migut.G00451 Erythranthe guttata HOM05D003940 ORTHO05D004461 5.8e-12 74.3 83 49.4
SalBow3G4424 Salvia bowleyana HOM05D003940 ORTHO05D004461 5.8e-12 74.3 87 55.2
Gohir.D09G056900 Gossypium hirsutum HOM05D003940 ORTHO05D004461 7.5e-12 73.9 93 44.1
Gorai.006G070500 Gossypium raimondii HOM05D003940 ORTHO05D004461 7.5e-12 73.9 93 44.1
Medtr1g073910 Medicago truncatula HOM05D003940 ORTHO05D004461 9.9e-12 73.6 91 52.7
Peaxi162Scf00024g01711 Petunia axillaris HOM05D003940 ORTHO05D004461 9.9e-12 73.6 103 45.6
Gohir.A10G112500 Gossypium hirsutum HOM05D003940 ORTHO05D004461 1.3e-11 73.2 100 49.0
Solyc09g089650.1 Solanum lycopersicum HOM05D003940 ORTHO05D004461 2.2e-11 72.4 100 45.0
MD16G1213100 Malus domestica HOM05D003940 ORTHO05D004461 2.9e-11 72.0 106 43.4
PGSC0003DMG400017255 Solanum tuberosum HOM05D003940 ORTHO05D004461 2.9e-11 72.0 98 44.9
CsaV3_2G012950 Cucumis sativus L. HOM05D003940 ORTHO05D004461 3.7e-11 71.6 121 42.1
Gohir.D02G043800 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.9e-11 71.2 99 45.5
Gorai.005G048200 Gossypium raimondii HOM05D003940 ORTHO05D004461 4.9e-11 71.2 99 45.5
FAN17G2041 Fragaria x ananassa HOM05D003940 ORTHO05D004461 6.4e-11 70.9 117 43.6
Oeu025569.1 Olea europaea HOM05D003940 ORTHO05D004461 6.4e-11 70.9 96 50.0
PGR004G1022 Punica granatum HOM05D003940 ORTHO05D004461 6.4e-11 70.9 114 43.9
Sopen09g032590 Solanum pennellii HOM05D003940 ORTHO05D004461 6.4e-11 70.9 100 45.0
TAR362G0514 Trochodendron aralioides HOM05D003940 ORTHO05D004461 6.4e-11 70.9 108 48.1
Lsat_1_v5_gn_3_122140 Lactuca sativa HOM05D003940 ORTHO05D004461 8.3e-11 70.5 106 48.1
RcHm_v2.0_Chr4g0391391 Rosa chinensis HOM05D003940 ORTHO05D004461 8.3e-11 70.5 120 44.2
TAR602G0001 Trochodendron aralioides HOM05D003940 ORTHO05D004461 8.3e-11 70.5 106 50.0
FAN22G2069 Fragaria x ananassa HOM05D003940 ORTHO05D004461 1.1e-10 70.1 120 45.0
Lsat_1_v5_gn_5_72560 Lactuca sativa HOM05D003940 ORTHO05D004461 1.1e-10 70.1 89 47.2
CAN.G738.11 Capsicum annuum HOM05D003940 ORTHO05D004461 1.4e-10 69.7 97 45.4
CARHR003650 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.4e-10 69.7 101 46.5
Sc13g0005150 Simmondsia chinensis HOM05D003940 ORTHO05D004461 1.4e-10 69.7 85 44.7
Aqoxy5G00265 Aquilegia oxysepala HOM05D003940 ORTHO05D004461 1.9e-10 69.3 100 46.0
Thhalv10009178m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.9e-10 69.3 100 45.0
AT1G04330 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.4e-10 68.9 100 45.0
MELO3C022975.2 Cucumis melo HOM05D003940 ORTHO05D004461 2.4e-10 68.9 133 42.1
FvH4_4g03100 Fragaria vesca HOM05D003940 ORTHO05D004461 3.2e-10 68.6 120 43.3
Manes.03G167050 Manihot esculenta HOM05D003940 ORTHO05D004461 3.2e-10 68.6 101 47.5
BcaC05g24452 Brassica carinata HOM05D003940 ORTHO05D004461 4.1e-10 68.2 102 47.1
Gohir.A09G057700 Gossypium hirsutum HOM05D003940 ORTHO05D004461 4.1e-10 68.2 93 40.9
Oeu063884.1 Olea europaea HOM05D003940 ORTHO05D004461 4.1e-10 68.2 92 50.0
Gohir.A02G037100 Gossypium hirsutum HOM05D003940 ORTHO05D004461 5.4e-10 67.8 99 43.4
Medtr1g044125 Medicago truncatula HOM05D003940 ORTHO05D004461 5.4e-10 67.8 95 47.4
THA.LOC104808609 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 5.4e-10 67.8 97 44.3
Carub.0001s0351 Capsella rubella HOM05D003940 ORTHO05D004461 7.1e-10 67.4 100 44.0
Ca_05393_v3 Cicer arietinum L. HOM05D003940 ORTHO05D004461 7.1e-10 67.4 93 49.5
ClCG05G004480 Citrullus lanatus HOM05D003940 ORTHO05D004461 7.1e-10 67.4 99 40.4
FAN12G3937 Fragaria x ananassa HOM05D003940 ORTHO05D004461 7.1e-10 67.4 117 42.7
SalBow2G1766 Salvia bowleyana HOM05D003940 ORTHO05D004461 7.1e-10 67.4 96 47.9
SHI00703 Sapria himalayana HOM05D003940 ORTHO05D004461 7.1e-10 67.4 86 51.2
A10p02740 Brassica napus HOM05D003940 ORTHO05D004461 9.2e-10 67.0 100 44.0
BraA10t42542Z Brassica rapa HOM05D003940 ORTHO05D004461 9.2e-10 67.0 100 44.0
DCAR_027292 Daucus carota HOM05D003940 ORTHO05D004461 1.2e-09 66.6 88 45.5
DCAR_027293 Daucus carota HOM05D003940 ORTHO05D004461 1.2e-09 66.6 88 45.5
AL1G13930 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.6e-09 66.2 99 43.4
CARHR220660 Cardamine hirsuta HOM05D003940 ORTHO05D004461 1.6e-09 66.2 107 41.1
AT3G23170 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 2.1e-09 65.9 99 45.5
C05p02510 Brassica napus HOM05D003940 ORTHO05D004461 2.1e-09 65.9 100 44.0
BolC5t29030H Brassica oleracea HOM05D003940 ORTHO05D004461 2.1e-09 65.9 100 44.0
CAN.G793.6 Capsicum annuum HOM05D003940 ORTHO05D004461 2.1e-09 65.9 106 43.4
ECA233G6082 Erigeron canadensis HOM05D003940 ORTHO05D004461 3.5e-09 65.1 90 40.0
MBI18_g43342_MAGBIO Magnolia biondii HOM05D003940 ORTHO05D004461 3.5e-09 65.1 100 45.0
TAR365G0320 Trochodendron aralioides HOM05D003940 ORTHO05D004461 4.6e-09 64.7 112 42.9
unitig_32.g11714 Utricularia gibba HOM05D003940 ORTHO05D004461 4.6e-09 64.7 98 42.9
Eucgr.H03139 Eucalyptus grandis HOM05D003940 ORTHO05D004461 6.0e-09 64.3 118 42.4
Thhalv10027546m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 6.0e-09 64.3 102 45.1
Sp1g03140 Schrenkiella parvula HOM05D003940 ORTHO05D004461 6.0e-09 64.3 100 45.0
AL3G37790 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 7.8e-09 63.9 99 44.4
AL7G41690 Arabidopsis lyrata HOM05D003940 ORTHO05D004461 1.3e-08 63.2 89 46.1
Thhalv10021654m.g Eutrema salsugineum HOM05D003940 ORTHO05D004461 1.3e-08 63.2 84 52.4
Nn1g00062 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.3e-08 63.2 132 40.9
Nn1g02702 Nelumbo nucifera HOM05D003940 ORTHO05D004461 1.3e-08 63.2 132 40.9
TAR636G1753 Trochodendron aralioides HOM05D003940 ORTHO05D004461 1.3e-08 63.2 96 43.8
BcaC07g42173 Brassica carinata HOM05D003940 ORTHO05D004461 1.7e-08 62.8 98 42.9
BcaC07g42193 Brassica carinata HOM05D003940 ORTHO05D004461 1.7e-08 62.8 98 42.9
BcaB02g08606 Brassica carinata HOM05D003940 ORTHO05D004461 2.3e-08 62.4 99 44.4
Carub.0003s2339 Capsella rubella HOM05D003940 ORTHO05D004461 3.9e-08 61.6 103 41.7
Sp7g12530 Schrenkiella parvula HOM05D003940 ORTHO05D004461 3.9e-08 61.6 101 41.6
CARHR099110 Cardamine hirsuta HOM05D003940 ORTHO05D004461 5.1e-08 61.2 96 47.9
Aa31LG8G9650 Aethionema arabicum HOM05D003940 ORTHO05D004461 6.6e-08 60.8 102 42.2
A04p07580 Brassica napus HOM05D003940 ORTHO05D004461 1.1e-07 60.1 99 42.4
BraA04t16449Z Brassica rapa HOM05D003940 ORTHO05D004461 1.1e-07 60.1 99 42.4
BcaB06g26449 Brassica carinata HOM05D003940 ORTHO05D004461 1.9e-07 59.3 83 49.4
BcaC02g09310 Brassica carinata HOM05D003940 ORTHO05D004461 3.3e-07 58.5 99 40.4
C04p41270 Brassica napus HOM05D003940 ORTHO05D004461 3.3e-07 58.5 99 40.4
BolC4t25705H Brassica oleracea HOM05D003940 ORTHO05D004461 3.3e-07 58.5 99 40.4
Sp3g20820 Schrenkiella parvula HOM05D003940 ORTHO05D004461 7.3e-07 57.4 101 45.5
AT4G14450 Arabidopsis thaliana HOM05D003940 ORTHO05D004461 1.2e-06 56.6 103 43.7
BolC7t41935H Brassica oleracea HOM05D003940 ORTHO05D004461 1.6e-06 56.2 95 45.3
Sed0008236 Sechium edule HOM05D003940 ORTHO05D004461 1.6e-06 56.2 97 39.2
C07p14380 Brassica napus HOM05D003940 ORTHO05D004461 2.1e-06 55.8 92 44.6
Nn3g19606 Nelumbo nucifera HOM05D003940 ORTHO05D004461 2.8e-06 55.5 125 40.0
Sed0000021 Sechium edule HOM05D003940 ORTHO05D004461 3.6e-06 55.1 110 35.5
THA.LOC104822248 Tarenaya hassleriana HOM05D003940 ORTHO05D004461 3.6e-06 55.1 97 45.4


User provided reference genes

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