Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 3.6e-137 491.5 236 100.0
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 6.9e-104 380.9 192 95.3
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.2e-95 353.6 233 73.8
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 1.7e-94 349.7 196 86.2
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 1.6e-92 343.2 196 83.7
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 4.6e-92 341.7 197 83.8
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 6.0e-92 341.3 196 83.2
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 7.9e-92 340.9 196 83.7
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 3.0e-91 339.0 192 83.9
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 3.9e-91 338.6 192 83.9
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 2.5e-90 335.9 196 82.7
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 8.2e-89 330.9 198 80.8
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 2.4e-88 329.3 198 80.8
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 4.1e-88 328.6 198 80.8
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 5.3e-88 328.2 196 81.6
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 5.3e-88 328.2 195 82.6
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 6.9e-88 327.8 198 81.8
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.2e-87 327.0 192 80.7
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 2.0e-87 326.2 214 76.6
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 2.0e-87 326.2 195 80.5
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 3.4e-87 325.5 196 79.1
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 4.5e-87 325.1 198 79.8
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 5.8e-87 324.7 198 79.3
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 1.3e-86 323.6 192 80.2
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 1.7e-86 323.2 199 78.9
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.7e-86 323.2 200 78.5
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.8e-86 322.0 199 78.4
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 5.0e-86 321.6 198 78.8
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.0e-86 321.6 199 77.9
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 8.4e-86 320.9 198 80.3
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.4e-85 320.1 199 78.4
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 4.2e-85 318.5 196 79.6
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 4.2e-85 318.5 198 78.3
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 5.5e-85 318.2 195 77.9
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 7.1e-85 317.8 194 79.4
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 1.2e-84 317.0 198 77.8
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 2.7e-84 315.8 198 78.3
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 2.7e-84 315.8 198 78.3
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 3.5e-84 315.5 198 80.3
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 3.5e-84 315.5 192 80.2
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 3.5e-84 315.5 198 78.3
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 7.9e-84 314.3 196 78.1
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 7.9e-84 314.3 198 78.3
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 1.0e-83 313.9 198 76.8
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 1.3e-83 313.5 198 76.3
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.3e-83 313.5 193 78.8
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 3.0e-83 312.4 199 75.4
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 3.9e-83 312.0 196 77.6
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 5.1e-83 311.6 198 79.8
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 5.1e-83 311.6 198 78.8
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 5.1e-83 311.6 198 77.8
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 5.1e-83 311.6 199 74.9
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 8.7e-83 310.8 199 74.9
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 8.7e-83 310.8 196 75.5
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.1e-82 310.5 197 78.2
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 1.1e-82 310.5 196 77.0
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 1.9e-82 309.7 196 77.0
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 1.9e-82 309.7 198 78.8
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 2.5e-82 309.3 198 77.8
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 4.3e-82 308.5 198 76.8
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 9.7e-82 307.4 198 78.3
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 1.3e-81 307.0 196 76.0
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 2.8e-81 305.8 198 75.8
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 3.7e-81 305.4 198 77.3
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 6.3e-81 304.7 198 76.3
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 6.3e-81 304.7 198 75.8
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 1.4e-80 303.5 198 74.7
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.8e-80 303.1 194 76.8
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 1.8e-80 303.1 196 74.5
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 2.4e-80 302.8 198 75.8
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 2.4e-80 302.8 198 74.7
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.4e-80 302.8 198 77.3
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 9.0e-80 300.8 196 74.0
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 2.0e-79 299.7 198 73.7
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 2.0e-79 299.7 230 67.0
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 1.0e-78 297.4 198 76.3
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 1.0e-78 297.4 198 72.7
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 8.5e-78 294.3 197 73.1
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 8.5e-78 294.3 195 73.3
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 8.5e-78 294.3 195 73.3
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 8.5e-78 294.3 197 73.1
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 1.4e-77 293.5 195 73.3
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 1.4e-77 293.5 196 72.4
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 4.2e-77 292.0 196 72.4
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 4.2e-77 292.0 197 72.1
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 4.2e-77 292.0 198 75.3
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 7.2e-77 291.2 195 72.3
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 2.1e-76 289.7 198 72.7
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 3.6e-76 288.9 197 72.6
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 3.6e-76 288.9 197 72.6
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 4.6e-76 288.5 188 74.5
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 4.6e-76 288.5 199 72.4
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 6.1e-76 288.1 195 71.8
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 1.0e-75 287.3 207 69.6
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 1.4e-75 287.0 200 73.0
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.8e-75 286.6 245 61.6
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 1.5e-74 283.5 195 71.3
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.0e-74 283.1 197 70.6
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 7.4e-74 281.2 174 78.7
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.4e-71 272.3 208 65.9
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 3.4e-71 272.3 192 70.3
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 3.4e-71 272.3 199 70.4
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 7.7e-71 271.2 199 69.8
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 1.0e-70 270.8 184 71.7
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 8.5e-70 267.7 197 66.0
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 2.5e-69 266.2 179 76.5
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.5e-69 266.2 202 67.3
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.5e-69 266.2 202 67.3
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 3.2e-69 265.8 234 60.3
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 1.4e-67 260.4 198 68.7
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 5.7e-66 255.0 189 68.8
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 1.7e-65 253.4 169 74.0
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 4.8e-65 251.9 169 75.1
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 4.8e-65 251.9 233 56.7
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 6.3e-65 251.5 201 63.2
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 1.8e-64 250.0 197 66.0
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 1.8e-64 250.0 197 66.0
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 1.8e-64 250.0 197 66.0
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 2.0e-63 246.5 231 57.1
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 2.6e-63 246.1 199 64.8
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 5.9e-63 245.0 210 59.0
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 2.9e-62 242.7 197 60.9
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 8.8e-59 231.1 210 57.1
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 4.4e-58 228.8 198 55.6
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 1.3e-57 227.3 192 59.9
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.0e-55 219.9 169 68.0
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 2.1e-52 209.9 200 55.5
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 3.6e-52 209.1 141 72.3
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 2.0e-50 203.4 199 51.8
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.4e-48 197.2 173 59.5
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 1.6e-47 193.7 136 71.3
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 7.2e-45 184.9 151 60.3
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.8e-43 180.3 174 58.6
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 2.0e-42 176.8 183 54.1
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 7.5e-42 174.9 93 83.9
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 1.1e-40 171.0 181 51.9
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 1.2e-39 167.5 196 46.9
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 7.0e-32 141.7 84 81.0
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 9.2e-32 141.4 205 38.0
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 2.0e-31 140.2 139 56.8
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 5.9e-31 138.7 100 73.0
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 6.6e-30 135.2 222 36.5
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 2.8e-28 129.8 84 70.2
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 8.3e-25 118.2 70 82.9
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 7.8e-23 111.7 199 36.2
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.1e-19 99.8 144 42.4
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 5.8e-18 95.5 89 53.9
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 3.2e-08 63.2 136 35.3
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 9.2e-08 61.6 205 24.9


User provided reference genes

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