Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 3.0e-215 751.5 364 100.0
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 5.3e-196 687.6 364 92.0
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 1.8e-183 646.0 364 84.9
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 8.8e-183 643.7 364 85.7
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 7.4e-182 640.6 362 84.5
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 1.3e-181 639.8 370 82.4
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 2.8e-181 638.6 362 83.7
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 2.4e-180 635.6 364 83.5
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 5.3e-180 634.4 369 82.4
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 7.0e-180 634.0 364 83.2
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 7.0e-180 634.0 363 83.2
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 2.6e-179 632.1 365 82.2
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 3.4e-179 631.7 369 83.5
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 7.7e-179 630.6 364 83.0
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.9e-178 628.6 362 81.2
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 2.9e-178 628.6 358 83.2
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 8.5e-178 627.1 360 82.8
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 1.4e-177 626.3 362 81.5
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.2e-177 625.2 367 80.7
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 4.2e-177 624.8 367 82.6
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 1.2e-176 623.2 364 81.9
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 2.1e-176 622.5 363 81.3
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 3.6e-176 621.7 367 80.4
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 2.3e-175 619.0 369 79.4
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 3.9e-175 618.2 364 80.5
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 6.7e-175 617.5 389 76.9
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 2.0e-174 615.9 362 80.7
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 2.6e-174 615.5 360 81.9
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 3.3e-174 615.1 362 79.6
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 5.7e-174 614.4 360 80.6
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 7.4e-174 614.0 362 80.9
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 1.7e-173 612.8 360 80.6
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.7e-173 612.8 358 81.8
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 3.7e-173 611.7 364 80.2
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 6.3e-173 610.9 363 79.9
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.4e-172 609.0 367 78.2
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.1e-172 608.6 367 77.9
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.1e-172 608.6 367 77.9
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 4.1e-172 608.2 363 79.9
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 4.1e-172 608.2 363 79.3
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 7.0e-172 607.4 357 81.2
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 9.1e-172 607.1 360 80.3
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 9.1e-172 607.1 362 78.7
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 9.1e-172 607.1 361 80.3
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 1.2e-171 606.7 360 80.8
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 1.2e-171 606.7 358 81.3
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.5e-171 605.1 360 79.4
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 7.7e-171 604.0 367 79.3
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 1.3e-170 603.2 360 80.6
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 1.7e-170 602.8 369 76.7
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 2.9e-170 602.1 363 79.1
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 2.9e-170 602.1 364 78.8
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 5.0e-170 601.3 364 79.4
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 5.0e-170 601.3 364 78.8
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 5.0e-170 601.3 360 80.0
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 8.5e-170 600.5 364 79.4
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 8.5e-170 600.5 364 79.4
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.1e-169 600.1 354 81.4
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.1e-169 600.1 361 80.1
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 1.9e-169 599.4 364 79.1
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 3.2e-169 598.6 360 79.4
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 5.5e-169 597.8 360 79.4
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 5.5e-169 597.8 359 79.9
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 5.5e-169 597.8 359 80.5
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 7.2e-169 597.4 362 80.4
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 7.2e-169 597.4 360 79.4
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 9.4e-169 597.0 360 79.4
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-168 596.7 360 79.4
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 1.6e-168 596.3 364 78.6
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.6e-168 596.3 360 79.2
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 1.6e-168 596.3 360 78.6
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.6e-168 596.3 357 81.0
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 3.6e-168 595.1 361 77.0
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 3.6e-168 595.1 360 79.4
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 4.7e-168 594.7 369 75.9
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 1.4e-167 593.2 364 78.6
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 4.0e-167 591.7 363 78.0
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 5.2e-167 591.3 364 78.6
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.2e-166 590.1 363 77.7
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.2e-166 590.1 389 74.8
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 7.5e-166 587.4 359 78.0
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 2.8e-165 585.5 364 76.6
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 1.1e-164 583.6 364 77.5
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 1.8e-164 582.8 367 74.7
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 3.1e-164 582.0 362 75.7
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 4.1e-164 581.6 360 77.8
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 7.0e-164 580.9 359 76.9
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 1.2e-163 580.1 366 75.1
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.2e-163 580.1 441 68.5
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.2e-163 580.1 359 76.3
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 2.0e-163 579.3 360 76.9
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 3.5e-163 578.6 364 76.6
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 2.2e-162 575.9 416 69.5
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 3.2e-161 572.0 363 75.2
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 6.1e-160 567.8 361 74.5
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.7e-157 559.7 452 63.3
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.6e-155 553.1 334 80.8
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 1.6e-155 553.1 457 60.6
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 5.5e-153 544.7 354 72.9
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.2e-152 543.5 361 70.9
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 3.6e-152 542.0 359 71.6
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 8.0e-152 540.8 360 71.4
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 1.8e-151 539.7 359 70.8
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 3.0e-151 538.9 360 70.8
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 6.8e-151 537.7 388 71.9
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 1.2e-150 537.0 375 68.3
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.8e-149 532.3 362 69.1
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 1.5e-145 520.0 362 66.9
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 4.7e-144 515.0 357 66.7
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 2.6e-142 509.2 354 67.5
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 4.1e-140 501.9 360 65.3
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 1.1e-137 493.8 357 63.6
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 4.3e-137 491.9 274 85.4
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 6.2e-136 488.0 520 50.8
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 3.3e-129 465.7 270 81.5
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 2.9e-125 452.6 345 68.1
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 7.1e-124 448.0 255 82.4
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 2.5e-121 439.5 385 56.6
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 3.2e-116 422.5 275 73.1
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 4.6e-107 392.1 349 57.3
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.6e-104 383.6 349 55.3
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 2.1e-99 366.7 302 59.9
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 3.5e-99 365.9 381 48.3
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 5.3e-87 325.5 225 69.3
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.2e-86 324.3 201 76.6
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 1.9e-84 317.0 271 60.5
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.6e-78 296.6 182 79.7
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 3.4e-78 296.2 164 84.1
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.2e-75 287.7 161 83.9
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 8.8e-74 281.6 177 74.0
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 4.5e-70 269.2 184 70.1
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.8e-66 257.3 353 43.9
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 2.2e-64 250.4 176 67.0
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.7e-53 214.2 118 85.6
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 5.7e-49 199.1 169 61.5
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 6.1e-43 179.1 106 77.4
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 5.5e-36 156.0 89 84.3
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.1e-35 154.1 106 71.7
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 1.2e-27 128.3 89 69.7
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 1.0e-26 125.2 177 44.1
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 5.6e-20 102.8 232 31.5
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.6e-19 101.3 112 52.7
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 8.1e-19 99.0 77 63.6
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 4.0e-18 96.7 62 69.4
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 6.8e-18 95.9 58 74.1
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 3.4e-17 93.6 72 68.1
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 4.1e-15 86.7 83 55.4
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 3.0e-13 80.5 66 56.1
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 5.8e-09 66.2 74 47.3
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 3.5e-06 57.0 35 74.3
QL11p040202 Quercus lobata HOM05D000018 ORTHO05D001172 4.6e-06 56.6 363 22.3


User provided reference genes

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