Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 0.0e+00 1085.1 563 100.0
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 7.5e-282 973.4 563 88.3
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 5.9e-271 937.2 563 87.4
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 1.3e-270 936.0 563 86.1
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 4.7e-268 927.5 563 85.6
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.0e-267 926.4 563 86.1
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 1.0e-267 926.4 563 85.8
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 2.3e-267 925.2 563 84.7
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 7.5e-266 920.2 563 84.5
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.7e-265 917.9 563 85.1
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 3.7e-265 917.9 563 84.9
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 1.2e-263 912.9 563 84.4
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 3.5e-263 911.4 563 83.7
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 4.6e-263 911.0 563 83.7
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 4.6e-263 911.0 563 83.7
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 2.3e-262 908.7 602 79.6
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 1.5e-261 906.0 563 82.8
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 1.3e-257 892.9 563 82.8
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 2.2e-257 892.1 563 84.2
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 1.1e-256 889.8 562 81.5
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 4.6e-255 884.4 563 81.3
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 3.9e-254 881.3 564 81.7
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 1.1e-253 879.8 563 80.5
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 1.9e-253 879.0 628 75.5
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 3.3e-253 878.2 563 81.3
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 5.6e-253 877.5 563 81.3
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 9.5e-253 876.7 563 81.5
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 1.6e-252 875.9 516 87.4
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 2.1e-252 875.5 563 81.9
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 4.7e-252 874.4 563 82.1
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 8.1e-252 873.6 563 81.0
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 3.1e-251 871.7 563 80.8
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 3.1e-251 871.7 563 79.2
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 2.0e-250 869.0 564 80.9
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 4.4e-250 867.8 559 82.1
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 1.3e-249 866.3 563 81.9
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 1.7e-249 865.9 563 79.4
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 3.7e-249 864.8 563 78.9
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 4.9e-249 864.4 563 79.8
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 1.1e-248 863.2 563 79.4
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 1.4e-248 862.8 563 79.9
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 1.6e-247 859.4 563 79.4
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 1.3e-246 856.3 563 78.7
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 6.6e-246 854.0 563 78.3
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 8.6e-246 853.6 563 79.0
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 3.1e-243 845.1 563 78.2
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 5.8e-242 840.9 565 78.4
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 1.3e-241 839.7 563 77.4
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 1.3e-241 839.7 563 77.4
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 4.9e-241 837.8 558 79.0
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 6.4e-241 837.4 560 78.9
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 2.4e-240 835.5 563 78.2
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 3.2e-240 835.1 577 77.1
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 5.4e-240 834.3 543 79.9
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 9.2e-240 833.6 614 73.9
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 1.2e-239 833.2 563 77.3
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 3.5e-239 831.6 563 77.8
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 1.8e-235 819.3 563 77.1
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 4.0e-235 818.1 566 75.6
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 9.0e-235 817.0 561 76.5
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.2e-234 816.6 546 79.1
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 1.9e-232 809.3 541 77.4
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 4.6e-231 804.7 563 75.8
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 1.3e-230 803.1 563 75.3
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 3.3e-229 798.5 648 68.2
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 5.6e-229 797.7 563 75.0
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 7.3e-229 797.3 563 74.8
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 1.1e-227 793.5 514 79.6
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.8e-227 792.7 577 74.5
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 3.1e-227 792.0 567 72.8
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 3.1e-227 792.0 563 74.2
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 4.0e-227 791.6 564 74.3
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 4.0e-227 791.6 564 74.3
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 1.2e-226 790.0 578 73.0
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 7.6e-226 787.3 563 74.1
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 1.3e-225 786.6 554 75.3
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 1.4e-224 783.1 563 73.5
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 4.2e-224 781.6 563 73.0
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 4.2e-224 781.6 516 78.7
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 1.6e-223 779.6 514 78.8
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 2.1e-223 779.2 534 76.6
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 3.5e-223 778.5 564 73.4
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 3.5e-223 778.5 563 73.4
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 4.6e-223 778.1 563 74.1
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 8.7e-222 773.9 563 71.4
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 2.1e-220 769.2 563 71.0
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 5.8e-218 761.1 564 69.7
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 1.2e-210 736.9 534 72.5
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 5.1e-206 721.5 596 68.1
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 2.3e-198 696.0 476 75.8
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.3e-188 663.7 393 87.0
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 5.9e-178 628.2 455 69.7
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 2.2e-177 626.3 434 73.3
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 6.5e-169 598.2 564 57.3
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 8.5e-169 597.8 564 56.4
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 1.6e-167 593.6 556 60.3
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 4.0e-166 589.0 570 56.3
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 3.8e-161 572.4 564 54.8
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.0e-150 537.7 339 83.5
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 2.3e-150 536.6 382 73.8
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 1.5e-149 533.9 567 50.3
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 4.7e-143 512.3 525 58.7
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 2.7e-138 496.5 306 85.6
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 3.9e-129 466.1 349 70.8
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.5e-125 454.1 342 69.3
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 1.4e-123 447.6 357 62.7
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 1.1e-107 394.8 262 76.0
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 1.7e-84 317.8 549 38.1
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 2.4e-78 297.4 208 78.8
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 3.7e-71 273.5 198 70.2
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 7.4e-64 249.2 200 70.0
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 1.8e-62 244.6 141 83.7
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.6e-56 224.2 130 86.9
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 2.8e-55 220.7 179 59.2
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 1.5e-48 198.4 163 68.7
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 3.3e-35 154.1 180 51.7
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 1.0e-33 149.1 178 50.6
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 1.8e-33 148.3 90 72.2
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 2.3e-33 147.9 158 55.7
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 2.3e-33 147.9 158 55.7
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 1.7e-31 141.7 90 78.9
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 4.6e-29 133.7 132 61.4
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 1.0e-28 132.5 167 49.7
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 4.0e-25 120.6 131 54.2
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 7.5e-24 116.3 77 72.7
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 2.1e-21 108.2 58 91.4
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 2.3e-17 94.7 87 63.2
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 5.2e-17 93.6 90 58.9
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 2.4e-14 84.7 82 56.1
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 5.8e-08 63.5 140 27.9
SEGI_03047 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 6.4e-07 60.1 47 72.3
SEGI_04834 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 8.4e-07 59.7 47 53.2
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 2.4e-06 58.2 131 28.2
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 3.2e-06 57.8 161 24.2
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 4.2e-06 57.4 169 24.3
ECA246G3380 Erigeron canadensis HOM05D004454 ORTHO05D005462 9.3e-06 56.2 161 25.5


User provided reference genes

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