Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G0118 Tripterygium wilfordii HOM05D007775 ORTHO05D009858 1.3e-176 622.9 304 100.0
Cfa015361 Carpinus fangiana HOM05D007775 ORTHO05D009858 1.6e-89 333.6 279 60.9
Thecc.04G279800 Theobroma cacao HOM05D007775 ORTHO05D009858 4.9e-86 322.0 277 58.8
COL.COLO4_13909 Corchorus olitorius HOM05D007775 ORTHO05D009858 2.7e-84 316.2 277 58.5
CiPaw.02G085200 Carya illinoinensis HOM05D007775 ORTHO05D009858 7.8e-84 314.7 273 59.7
Ciclev10005542m.g Citrus clementina HOM05D007775 ORTHO05D009858 1.0e-83 314.3 298 58.4
Dinv38311 Davidia involucrata HOM05D007775 ORTHO05D009858 3.0e-83 312.8 276 58.0
Atru.chr4.2786 Acer truncatum HOM05D007775 ORTHO05D009858 8.6e-83 311.2 258 61.6
QL06p007731 Quercus lobata HOM05D007775 ORTHO05D009858 1.6e-81 307.0 283 58.7
TAR362G1316 Trochodendron aralioides HOM05D007775 ORTHO05D009858 4.7e-81 305.4 289 54.3
Potri.008G215200 Populus trichocarpa HOM05D007775 ORTHO05D009858 6.2e-81 305.1 297 54.2
Duzib151G1205 Durio zibethinus HOM05D007775 ORTHO05D009858 5.2e-80 302.0 256 59.4
Gohir.D10G168200 Gossypium hirsutum HOM05D007775 ORTHO05D009858 8.9e-80 301.2 280 55.7
Gorai.011G187800 Gossypium raimondii HOM05D007775 ORTHO05D009858 7.6e-79 298.1 283 55.5
Sabra08G0155600 Salix brachista HOM05D007775 ORTHO05D009858 1.3e-78 297.4 281 55.5
ClCG06G005300 Citrullus lanatus HOM05D007775 ORTHO05D009858 4.9e-78 295.4 295 53.2
Prupe.1G140100 Prunus persica HOM05D007775 ORTHO05D009858 2.1e-76 290.0 288 55.2
GSVIVG01017782001 Vitis vinifera HOM05D007775 ORTHO05D009858 4.6e-76 288.9 266 56.8
PGR031G0649 Punica granatum HOM05D007775 ORTHO05D009858 6.0e-76 288.5 278 55.4
Eucgr.B01278 Eucalyptus grandis HOM05D007775 ORTHO05D009858 6.6e-75 285.0 287 54.4
Actinidia40242 Actinidia chinensis HOM05D007775 ORTHO05D009858 1.2e-73 280.8 283 53.0
FvH4_4g17570 Fragaria vesca HOM05D007775 ORTHO05D009858 1.6e-73 280.4 297 52.9
MELO3C021348.2 Cucumis melo HOM05D007775 ORTHO05D009858 3.6e-73 279.3 285 50.5
RcHm_v2.0_Chr4g0421471 Rosa chinensis HOM05D007775 ORTHO05D009858 4.7e-73 278.9 277 54.2
THA.LOC104820248 Tarenaya hassleriana HOM05D007775 ORTHO05D009858 4.7e-73 278.9 293 49.1
CsaV3_6G017340 Cucumis sativus L. HOM05D007775 ORTHO05D009858 8.1e-73 278.1 283 51.2
Manes.15G015200 Manihot esculenta HOM05D007775 ORTHO05D009858 4.0e-72 275.8 264 58.7
Rhsim04G0218300 Rhododendron simsii HOM05D007775 ORTHO05D009858 4.0e-72 275.8 298 51.0
AT2G39100 Arabidopsis thaliana HOM05D007775 ORTHO05D009858 6.8e-72 275.0 280 53.2
FAN07G2931 Fragaria x ananassa HOM05D007775 ORTHO05D009858 8.9e-72 274.6 284 54.2
Cpa.g.sc197.12 Carica papaya HOM05D007775 ORTHO05D009858 2.6e-71 273.1 268 52.2
CARHR133870 Cardamine hirsuta HOM05D007775 ORTHO05D009858 7.6e-71 271.6 307 50.8
Sp4g21450 Schrenkiella parvula HOM05D007775 ORTHO05D009858 9.9e-71 271.2 277 52.7
MD13G1171700 Malus domestica HOM05D007775 ORTHO05D009858 2.9e-70 269.6 286 53.5
Cc03_g02150 Coffea canephora HOM05D007775 ORTHO05D009858 4.9e-70 268.9 274 50.0
MBI19_g01943_MAGBIO Magnolia biondii HOM05D007775 ORTHO05D009858 1.1e-69 267.7 280 51.1
Thhalv10017000m.g Eutrema salsugineum HOM05D007775 ORTHO05D009858 3.2e-69 266.2 271 52.8
Aa31LG5G20500 Aethionema arabicum HOM05D007775 ORTHO05D009858 3.5e-68 262.7 282 51.1
Gohir.A10G161700 Gossypium hirsutum HOM05D007775 ORTHO05D009858 3.5e-68 262.7 259 54.8
C04p67030 Brassica napus HOM05D007775 ORTHO05D009858 2.3e-67 260.0 280 50.4
Solyc06g054580.4 Solanum lycopersicum HOM05D007775 ORTHO05D009858 1.1e-66 257.7 278 50.4
BraA04t18439Z Brassica rapa HOM05D007775 ORTHO05D009858 1.9e-66 256.9 295 49.5
BolC4t28205H Brassica oleracea HOM05D007775 ORTHO05D009858 3.3e-66 256.1 282 50.0
Sed0017003 Sechium edule HOM05D007775 ORTHO05D009858 3.3e-66 256.1 272 50.7
Nn3g16301 Nelumbo nucifera HOM05D007775 ORTHO05D009858 4.3e-66 255.8 271 51.7
Sopen06g019650 Solanum pennellii HOM05D007775 ORTHO05D009858 9.6e-66 254.6 278 49.6
Carub.0004s2115 Capsella rubella HOM05D007775 ORTHO05D009858 3.6e-65 252.7 279 48.7
PGSC0003DMG400030783 Solanum tuberosum HOM05D007775 ORTHO05D009858 3.6e-65 252.7 278 49.3
Lsat_1_v5_gn_5_52881 Lactuca sativa HOM05D007775 ORTHO05D009858 4.0e-64 249.2 286 48.3
Ah.13g074550 Amaranthus hybridus HOM05D007775 ORTHO05D009858 4.4e-63 245.7 271 49.4
Lj6A671T60 Lonicera japonica HOM05D007775 ORTHO05D009858 4.4e-63 245.7 282 49.6
CANSAT78G0244 Cannabis sativa HOM05D007775 ORTHO05D009858 7.6e-63 245.0 267 49.8
FAN12G2546 Fragaria x ananassa HOM05D007775 ORTHO05D009858 7.6e-63 245.0 274 51.1
PSO210G6602 Papaver somniferum HOM05D007775 ORTHO05D009858 2.1e-60 236.9 301 43.9
HanXRQChr03g0080871 Helianthus annuus HOM05D007775 ORTHO05D009858 8.7e-59 231.5 292 45.9
arahy.Tifrunner.gnm1.ann1.KJPE0P Arachis hypogaea HOM05D007775 ORTHO05D009858 3.3e-58 229.6 312 45.2
arahy.Tifrunner.gnm1.ann1.J8QG6N Arachis hypogaea HOM05D007775 ORTHO05D009858 3.6e-57 226.1 299 45.5
CAN.G256.16 Capsicum annuum HOM05D007775 ORTHO05D009858 3.1e-56 223.0 275 46.9
Lalb_Chr13g0303771 Lupinus albus HOM05D007775 ORTHO05D009858 2.0e-55 220.3 290 44.8
Nitab4.5_0001459g0060 Nicotiana tabacum HOM05D007775 ORTHO05D009858 2.0e-55 220.3 248 48.8
Nitab4.5_0002148g0040 Nicotiana tabacum HOM05D007775 ORTHO05D009858 2.0e-55 220.3 254 50.0
Oeu021116.1 Olea europaea HOM05D007775 ORTHO05D009858 7.6e-55 218.4 265 44.5
DCAR_024553 Daucus carota HOM05D007775 ORTHO05D009858 3.9e-51 206.1 248 44.4
A04p29770 Brassica napus HOM05D007775 ORTHO05D009858 8.7e-51 204.9 244 49.2
ECA240G4119 Erigeron canadensis HOM05D007775 ORTHO05D009858 1.2e-47 194.5 252 43.3
Peaxi162Scf00033g01324 Petunia axillaris HOM05D007775 ORTHO05D009858 1.0e-46 191.4 270 40.7
AL4G36400 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 1.7e-46 190.7 215 51.2
Aqoxy2G03074 Aquilegia oxysepala HOM05D007775 ORTHO05D009858 5.5e-45 185.7 215 49.3
BcaC02g12905 Brassica carinata HOM05D007775 ORTHO05D009858 1.3e-43 181.0 218 47.7
Sc06g0007440 Simmondsia chinensis HOM05D007775 ORTHO05D009858 8.2e-41 171.8 256 40.2
FAN12G2785 Fragaria x ananassa HOM05D007775 ORTHO05D009858 2.7e-36 156.8 183 48.6
AL92U10060 Arabidopsis lyrata HOM05D007775 ORTHO05D009858 3.0e-35 153.3 182 48.9
Haze_01245 Corylus avellana HOM05D007775 ORTHO05D009858 3.0e-35 153.3 154 53.9
ATR0706G202 Amborella trichopoda HOM05D007775 ORTHO05D009858 5.7e-34 149.1 216 43.5
Pp3c21_11960 Physcomitrium patens HOM05D007775 ORTHO05D009858 1.0e-30 138.3 307 31.9
SMO147G0036 Selaginella moellendorffii HOM05D007775 ORTHO05D009858 9.4e-29 131.7 329 31.6
QL06p007898 Quercus lobata HOM05D007775 ORTHO05D009858 2.1e-28 130.6 119 60.5
vmacro08108 Vaccinium macrocarpon HOM05D007775 ORTHO05D009858 2.0e-26 124.0 91 61.5
CSS0035717 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 1.7e-22 110.9 77 66.2
CSS0050081 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 3.8e-22 109.8 77 66.2
CSS0036115 Camellia sinensis var. sinensis HOM05D007775 ORTHO05D009858 5.5e-21 105.9 77 64.9
SEGI_08073 Sequoiadendron giganteum HOM05D007775 ORTHO05D009858 2.3e-19 100.5 152 38.2
SEGI_15450 Sequoiadendron giganteum HOM05D007775 ORTHO05D009858 2.3e-19 100.5 127 38.6
Prupe.8G004900 Prunus persica HOM05D007775 ORTHO05D009858 2.4e-16 90.5 97 50.5
MSTRG.10078 Avicennia marina HOM05D007775 ORTHO05D009858 2.0e-10 70.9 71 46.5
COL.COLO4_10908 Corchorus olitorius HOM05D007775 ORTHO05D009858 1.1e-08 65.1 73 46.6


User provided reference genes

Program Settings