Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 2215.3 1105 100.0
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1428.3 1146 64.0
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1424.1 1150 64.0
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1394.8 1148 63.2
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1393.3 1083 64.5
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1390.2 1106 64.4
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1357.0 1153 61.3
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1349.3 1147 61.5
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1338.6 1151 61.3
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1335.5 1124 61.9
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1332.0 1134 61.6
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1315.8 1134 60.8
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1311.2 1138 59.8
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1309.3 1052 61.9
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1301.6 1064 60.9
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1292.3 1061 60.6
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1288.9 1163 60.0
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1273.1 1149 59.3
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1264.2 1169 56.5
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1241.9 1048 59.8
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1238.4 1080 60.3
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1236.9 1093 58.6
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1229.9 1081 59.1
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1227.6 1070 59.6
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1227.6 1070 59.6
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1221.8 1064 58.8
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1221.1 1119 57.8
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1219.5 1063 59.0
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1214.9 1122 57.0
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1210.7 1064 58.5
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1209.5 1088 59.7
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1207.6 1058 58.8
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1203.7 1084 57.6
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1200.7 1147 56.3
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1199.1 1072 58.4
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1193.7 1046 58.9
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1186.8 1095 56.3
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 1185.6 1065 57.5
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1184.5 1115 55.2
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1182.2 1122 53.9
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 1181.8 1064 57.1
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1176.4 1067 57.8
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1167.9 1000 59.4
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1155.6 1142 53.7
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 0.0e+00 1155.2 1022 57.2
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1149.8 1133 53.1
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 0.0e+00 1136.3 1138 52.5
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1129.4 1052 55.5
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1129.0 1149 52.0
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1128.6 1129 52.2
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 0.0e+00 1127.1 1145 52.3
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 0.0e+00 1126.7 1143 52.1
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1126.7 1148 51.9
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 0.0e+00 1125.5 1118 53.1
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 0.0e+00 1120.9 984 57.7
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1110.1 1066 54.4
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 0.0e+00 1101.3 1080 52.7
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 0.0e+00 1097.0 1119 52.0
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1090.5 1109 52.1
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1083.6 928 59.7
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1082.0 1100 52.3
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1081.6 1079 52.3
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 0.0e+00 1075.1 874 61.4
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 3.8e-311 1071.6 1145 50.6
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 7.7e-307 1057.4 1041 53.1
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 1.0e-303 1047.0 986 54.4
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 4.4e-302 1041.6 1073 51.4
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 8.3e-301 1037.3 1131 49.3
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 3.5e-299 1031.9 1134 50.4
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 1.0e-295 1020.4 970 53.1
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.0e-294 1016.1 901 56.9
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 8.3e-293 1010.7 1055 51.5
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 5.6e-289 998.0 1044 50.3
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 4.0e-287 991.9 900 56.3
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 7.8e-283 977.6 877 58.7
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 4.3e-281 971.8 1082 48.1
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 2.9e-277 959.1 898 56.0
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 2.4e-276 956.1 774 61.5
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 8.6e-274 947.6 1183 45.7
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 7.1e-268 927.9 874 55.9
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 2.1e-264 916.4 1075 46.0
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 6.4e-261 904.8 1088 45.8
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 1.4e-260 903.7 882 53.2
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 4.6e-259 898.7 1081 46.3
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 1.2e-246 857.4 1114 44.9
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 5.8e-246 855.1 766 58.5
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 2.1e-240 836.6 697 60.4
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 1.2e-235 820.8 1000 44.2
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 5.9e-230 802.0 657 62.4
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 1.7e-229 800.4 706 58.8
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 2.9e-221 773.1 640 60.8
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.6e-219 765.8 552 67.2
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 3.7e-216 756.1 708 54.7
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 6.1e-203 712.2 1086 40.0
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 5.9e-198 695.7 1070 37.6
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 5.6e-164 582.8 505 60.0
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 9.5e-164 582.0 598 50.2
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 1.6e-158 564.7 653 46.1
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 9.3e-143 512.3 376 67.3
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 3.4e-137 493.8 401 64.8
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.4e-106 392.1 339 56.6
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 2.6e-92 344.7 391 49.1
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 1.0e-88 332.8 218 70.2
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 2.0e-84 318.5 219 68.5
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 3.8e-80 304.3 1038 26.4
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 8.5e-80 303.1 226 65.0
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 1.8e-74 285.4 267 55.8
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 1.2e-60 239.6 189 62.4
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.2e-57 229.6 181 61.9
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 4.6e-57 227.6 334 39.2
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 4.6e-57 227.6 206 55.3
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.3e-56 225.3 181 61.3
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 3.9e-56 224.6 347 37.2
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 3.3e-55 221.5 181 60.2
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 4.3e-55 221.1 179 63.1
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.7e-51 209.1 949 24.0
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 1.2e-46 193.0 130 69.2
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.7e-43 182.6 1089 22.5
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 2.7e-41 175.3 206 42.2
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 1.6e-38 166.0 126 64.3
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 8.1e-38 163.7 154 48.7
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 6.8e-37 160.6 449 25.8
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 3.2e-34 151.8 115 58.3
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 9.2e-34 150.2 132 56.1
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 5.1e-32 144.4 136 54.4
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 1.9e-31 142.5 134 55.2
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 4.0e-29 134.8 132 50.0
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 9.9e-28 130.2 963 21.3
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 9.3e-26 123.6 132 50.8
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.5e-23 115.5 625 24.6
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 2.1e-22 112.5 84 54.8
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 2.8e-22 112.1 102 50.0
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 6.2e-22 110.9 84 63.1
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 9.9e-20 103.6 584 23.3
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 3.2e-18 98.6 77 62.3
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.8e-16 92.8 272 27.9
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 6.2e-14 84.3 58 63.8
AagrBONN_evm.TU.Sc2ySwM_340.308 Anthoceros agrestis HOM05D005069 ORTHO05D006024 8.1e-14 84.0 466 22.1
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 1.8e-13 82.8 58 62.1
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 6.9e-13 80.9 57 63.2
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 4.5e-12 78.2 103 39.8
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 1.3e-11 76.6 83 42.2
CARHR059510 Cardamine hirsuta HOM05D005069 ORTHO05D006024 8.4e-11 73.9 78 52.6
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.1e-10 73.6 258 25.2
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 2.4e-10 72.4 347 22.5
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 3.2e-10 72.0 138 34.8
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 9.3e-10 70.5 591 21.5
CARHR286000 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.5e-07 62.4 53 52.8
Lsat_1_v5_gn_9_49740 Lactuca sativa HOM05D001718 ORTHO05D007949 4.3e-07 61.6 54 48.1
Lsat_1_v5_gn_6_63420 Lactuca sativa HOM05D003976 ORTHO05D004711 5.6e-07 61.2 61 47.5
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 1.6e-06 59.7 46 56.5


User provided reference genes

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