Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 1.7e-227 792.3 397 100.0
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 2.7e-137 492.7 399 62.9
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 9.7e-135 484.2 409 60.9
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 8.5e-131 471.1 414 58.7
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.4e-130 470.3 400 61.0
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 2.7e-129 466.1 393 62.3
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 1.8e-128 463.4 395 61.3
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.0e-128 462.6 403 59.3
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 1.1e-127 460.7 320 67.2
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 4.4e-127 458.8 414 57.7
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 1.7e-126 456.8 395 60.3
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 2.2e-126 456.4 397 61.0
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 2.2e-126 456.4 405 58.5
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 5.3e-125 451.8 399 59.9
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 7.0e-125 451.4 336 64.6
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 1.0e-123 447.6 397 58.7
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 1.7e-123 446.8 404 58.7
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 2.2e-123 446.4 403 55.8
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 3.8e-123 445.7 395 59.5
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 3.8e-123 445.7 345 64.3
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 1.1e-122 444.1 394 57.9
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 1.5e-122 443.7 343 62.4
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 5.5e-122 441.8 366 60.4
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 7.2e-122 441.4 399 58.9
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 2.7e-121 439.5 399 56.9
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 2.7e-121 439.5 362 60.5
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 6.1e-121 438.3 394 56.6
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 1.0e-120 437.6 389 56.3
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 1.8e-120 436.8 390 57.2
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 4.0e-120 435.6 313 66.5
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 2.6e-119 433.0 391 57.8
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.7e-118 430.3 401 57.1
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 2.8e-118 429.5 388 56.4
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 3.7e-118 429.1 385 57.1
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 1.1e-117 427.6 395 54.4
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 3.1e-117 426.0 395 53.4
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 3.1e-117 426.0 396 56.3
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 5.3e-117 425.2 401 56.4
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.6e-116 423.7 407 56.0
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.7e-116 422.9 409 55.7
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 3.5e-116 422.5 464 51.1
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.7e-115 420.2 395 53.7
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 2.9e-115 419.5 404 54.7
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 2.5e-114 416.4 395 53.4
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 3.2e-114 416.0 361 57.1
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 7.2e-114 414.8 395 52.7
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.2e-113 414.1 395 53.7
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 2.1e-113 413.3 396 53.5
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 2.1e-113 413.3 409 51.8
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 2.7e-113 412.9 395 54.7
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 2.7e-113 412.9 395 53.4
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 2.7e-113 412.9 346 58.1
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 3.6e-113 412.5 329 59.3
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.4e-112 410.6 328 59.8
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.8e-112 410.2 427 53.2
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 8.8e-112 407.9 388 56.7
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 2.0e-111 406.8 395 52.7
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 2.0e-111 406.8 395 52.7
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 4.4e-111 405.6 395 53.9
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 9.8e-111 404.4 361 54.3
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.7e-110 403.7 396 51.8
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 2.2e-110 403.3 317 62.1
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 2.8e-110 402.9 413 49.9
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 2.8e-110 402.9 347 56.5
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 2.8e-110 402.9 395 52.4
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 8.3e-110 401.4 394 53.6
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 8.3e-110 401.4 323 57.6
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 1.4e-109 400.6 409 51.1
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 1.8e-109 400.2 315 60.3
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.2e-108 397.5 317 59.0
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 1.2e-108 397.5 319 57.7
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 2.0e-108 396.7 400 51.8
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 2.0e-108 396.7 306 59.8
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 1.3e-107 394.0 397 51.1
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 1.7e-107 393.7 319 58.0
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 3.8e-107 392.5 320 58.4
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.1e-106 391.0 389 51.7
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 5.5e-106 388.7 392 52.3
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 7.2e-106 388.3 315 58.1
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 9.5e-106 387.9 331 58.6
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 1.6e-105 387.1 332 56.6
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 8.0e-105 384.8 403 50.9
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 1.0e-104 384.4 317 56.2
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 3.0e-104 382.9 389 52.2
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 1.2e-103 380.9 359 51.5
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 9.8e-103 377.9 336 58.0
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 9.8e-103 377.9 317 55.8
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 1.4e-101 374.0 369 52.3
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 2.3e-99 366.7 330 53.0
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 6.6e-99 365.2 317 55.8
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 2.5e-98 363.2 328 57.0
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 7.3e-98 361.7 420 45.2
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 9.5e-98 361.3 344 54.7
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 2.1e-97 360.1 403 49.4
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 6.8e-96 355.1 348 52.9
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 1.5e-95 354.0 318 54.1
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 7.5e-95 351.7 390 48.5
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 2.4e-93 346.7 376 50.0
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 5.4e-93 345.5 331 52.6
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 3.5e-92 342.8 320 52.5
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 7.8e-92 341.7 239 65.3
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 1.3e-91 340.9 393 49.6
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 1.6e-89 334.0 312 52.2
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 2.3e-88 330.1 298 56.0
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 6.8e-88 328.6 271 60.1
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 2.9e-86 323.2 452 43.4
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 2.3e-83 313.5 274 59.1
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 8.9e-80 301.6 231 63.2
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 3.5e-76 289.7 280 54.6
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 5.1e-75 285.8 365 45.8
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 8.6e-75 285.0 235 56.6
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 1.1e-74 284.6 197 65.5
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 2.0e-71 273.9 321 49.5
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 1.9e-61 240.7 254 48.8
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 5.4e-53 212.6 314 38.2
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 4.6e-52 209.5 189 55.6
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 4.3e-42 176.4 132 62.9
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 5.0e-38 162.9 123 64.2
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 2.1e-36 157.5 310 31.6
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 8.7e-35 152.1 174 46.0
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 7.4e-34 149.1 177 42.9
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 1.4e-32 144.8 126 61.9
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 3.1e-32 143.7 308 31.2
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 1.8e-24 117.9 150 40.0
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 6.9e-24 115.9 76 65.8
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 2.6e-23 114.0 252 36.1
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.9e-23 112.8 69 72.5
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 1.3e-22 111.7 211 33.6
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 8.5e-22 109.0 97 59.8
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 9.4e-21 105.5 93 58.1
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 2.1e-20 104.4 339 23.6
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 6.1e-20 102.8 246 27.6
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 5.3e-16 89.7 94 48.9
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 5.9e-15 86.3 111 40.5
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 1.1e-13 82.0 136 38.2
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.1e-10 72.0 71 56.3
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.1e-08 63.9 40 67.5
Hund28065 Selenicereus undatus HOM05D000003 ORTHO05D000006 6.5e-06 56.2 181 30.9
Hund28074 Selenicereus undatus HOM05D000003 ORTHO05D000006 6.5e-06 56.2 181 30.9


User provided reference genes

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