Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G999 Trifolium pratense HOM05D003675 ORTHO05D004318 1.6e-17 91.7 45 100.0
Ca_02515_v3 Cicer arietinum L. HOM05D003675 ORTHO05D004318 8.7e-16 85.9 43 97.7
Lj6g0000180 Lotus japonicus HOM05D003675 ORTHO05D004318 1.1e-15 85.5 43 97.7
Lalb_Chr08g0233231 Lupinus albus HOM05D003675 ORTHO05D004318 1.5e-15 85.1 43 93.0
Phvul.009G216800 Phaseolus vulgaris HOM05D003675 ORTHO05D004318 1.9e-15 84.7 43 90.7
Glyma.15G193400 Glycine max HOM05D003675 ORTHO05D004318 2.5e-15 84.3 43 93.0
Medtr2g048510 Medicago truncatula HOM05D003675 ORTHO05D004318 3.3e-15 84.0 43 95.3
Glyma.09G085300 Glycine max HOM05D003675 ORTHO05D004318 1.3e-14 82.0 43 90.7
BcaB03g13830 Brassica carinata HOM05D003675 ORTHO05D004318 3.7e-14 80.5 43 86.0
A07p09940 Brassica napus HOM05D003675 ORTHO05D004318 3.7e-14 80.5 43 86.0
BraA07t28783Z Brassica rapa HOM05D003675 ORTHO05D004318 3.7e-14 80.5 43 86.0
Manes.06G060500 Manihot esculenta HOM05D003675 ORTHO05D004318 4.8e-14 80.1 43 83.7
C07p15140 Brassica napus HOM05D003675 ORTHO05D004318 1.1e-13 79.0 43 83.7
BolC7t42018H Brassica oleracea HOM05D003675 ORTHO05D004318 1.1e-13 79.0 43 83.7
ClCG03G006310 Citrullus lanatus HOM05D003675 ORTHO05D004318 1.1e-13 79.0 43 79.1
Eucgr.D00196 Eucalyptus grandis HOM05D003675 ORTHO05D004318 1.1e-13 79.0 43 86.0
VMungo1309G0958 Vigna mungo HOM05D003675 ORTHO05D004318 1.1e-13 79.0 41 90.2
Actinidia07469 Actinidia chinensis HOM05D003675 ORTHO05D004318 1.4e-13 78.6 43 81.4
BcaC01g00192 Brassica carinata HOM05D003675 ORTHO05D004318 1.8e-13 78.2 43 83.7
BcaNung05260 Brassica carinata HOM05D003675 ORTHO05D004318 1.8e-13 78.2 43 83.7
A08p24460 Brassica napus HOM05D003675 ORTHO05D004318 1.8e-13 78.2 43 83.7
C03p76760 Brassica napus HOM05D003675 ORTHO05D004318 1.8e-13 78.2 43 83.7
BolC3t19930H Brassica oleracea HOM05D003675 ORTHO05D004318 1.8e-13 78.2 43 83.7
BraA08t34402Z Brassica rapa HOM05D003675 ORTHO05D004318 1.8e-13 78.2 43 83.7
CANSAT35G1002 Cannabis sativa HOM05D003675 ORTHO05D004318 1.8e-13 78.2 43 83.7
Lalb_Chr11g0073421 Lupinus albus HOM05D003675 ORTHO05D004318 1.8e-13 78.2 43 83.7
Dinv32189 Davidia involucrata HOM05D003675 ORTHO05D004318 2.4e-13 77.8 43 81.4
Sabra16G0235300 Salix brachista HOM05D003675 ORTHO05D004318 2.4e-13 77.8 43 86.0
DCAR_003868 Daucus carota HOM05D003675 ORTHO05D004318 3.1e-13 77.4 43 81.4
Sp1g26270 Schrenkiella parvula HOM05D003675 ORTHO05D004318 3.1e-13 77.4 43 83.7
Sed0018861 Sechium edule HOM05D003675 ORTHO05D004318 3.1e-13 77.4 43 81.4
Thhalv10006695m.g Eutrema salsugineum HOM05D003675 ORTHO05D004318 4.1e-13 77.0 43 81.4
Oeu015186.1 Olea europaea HOM05D003675 ORTHO05D004318 4.1e-13 77.0 43 79.1
Cc09_g08810 Coffea canephora HOM05D003675 ORTHO05D004318 5.3e-13 76.6 43 81.4
TWI53G0160 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 5.3e-13 76.6 43 83.7
TWI73G0281 Tripterygium wilfordii HOM05D003675 ORTHO05D004318 5.3e-13 76.6 43 83.7
Aa31LG6G11710 Aethionema arabicum HOM05D003675 ORTHO05D004318 6.9e-13 76.3 43 81.4
CARHR029820 Cardamine hirsuta HOM05D003675 ORTHO05D004318 6.9e-13 76.3 43 81.4
Nitab4.5_0000100g0150 Nicotiana tabacum HOM05D003675 ORTHO05D004318 6.9e-13 76.3 43 83.7
Nitab4.5_0006732g0010 Nicotiana tabacum HOM05D003675 ORTHO05D004318 6.9e-13 76.3 43 83.7
PGSC0003DMG400021101 Solanum tuberosum HOM05D003675 ORTHO05D004318 6.9e-13 76.3 43 83.7
AL1G44390 Arabidopsis lyrata HOM05D003675 ORTHO05D004318 9.0e-13 75.9 43 79.1
AT1G30450 Arabidopsis thaliana HOM05D003675 ORTHO05D004318 9.0e-13 75.9 43 79.1
Peaxi162Scf00155g01015 Petunia axillaris HOM05D003675 ORTHO05D004318 9.0e-13 75.9 43 83.7
Potri.001G357600 Populus trichocarpa HOM05D003675 ORTHO05D004318 1.2e-12 75.5 43 83.7
ECA233G3702 Erigeron canadensis HOM05D003675 ORTHO05D004318 1.5e-12 75.1 43 81.4
Lsat_1_v5_gn_8_147381 Lactuca sativa HOM05D003675 ORTHO05D004318 1.5e-12 75.1 43 81.4
Manes.14G134400 Manihot esculenta HOM05D003675 ORTHO05D004318 1.5e-12 75.1 43 79.1
Sabra11G0086100 Salix brachista HOM05D003675 ORTHO05D004318 1.5e-12 75.1 42 83.3
Atru.chr10.917 Acer truncatum HOM05D003675 ORTHO05D004318 2.0e-12 74.7 43 83.7
Atru.chr10.925 Acer truncatum HOM05D003675 ORTHO05D004318 2.0e-12 74.7 43 83.7
Ciclev10014154m.g Citrus clementina HOM05D003675 ORTHO05D004318 2.0e-12 74.7 43 79.1
HanXRQChr08g0209981 Helianthus annuus HOM05D003675 ORTHO05D004318 2.0e-12 74.7 43 79.1
CAN.G660.39 Capsicum annuum HOM05D003675 ORTHO05D004318 2.6e-12 74.3 43 81.4
Nitab4.5_0000869g0160 Nicotiana tabacum HOM05D003675 ORTHO05D004318 2.6e-12 74.3 43 81.4
Nitab4.5_0007290g0030 Nicotiana tabacum HOM05D003675 ORTHO05D004318 2.6e-12 74.3 43 81.4
PGR083G0730 Punica granatum HOM05D003675 ORTHO05D004318 2.6e-12 74.3 43 83.7
Solyc02g070290.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 2.6e-12 74.3 43 81.4
Sopen02g019380 Solanum pennellii HOM05D003675 ORTHO05D004318 2.6e-12 74.3 43 81.4
CAN.G1058.33 Capsicum annuum HOM05D003675 ORTHO05D004318 3.4e-12 73.9 43 81.4
Potri.011G090900 Populus trichocarpa HOM05D003675 ORTHO05D004318 3.4e-12 73.9 42 81.0
SHI20674 Sapria himalayana HOM05D000105 ORTHO05D000023 3.4e-12 73.9 43 81.4
SGA_v2.0_scaffold51G18648 Striga asiatica HOM05D003675 ORTHO05D004318 3.4e-12 73.9 43 79.1
TAR626G1758 Trochodendron aralioides HOM05D003675 ORTHO05D004318 3.4e-12 73.9 42 78.6
Migut.H01338 Erythranthe guttata HOM05D003675 ORTHO05D004318 4.5e-12 73.6 43 76.7
SGA_v2.0_scaffold106G30664 Striga asiatica HOM05D003675 ORTHO05D004318 4.5e-12 73.6 43 76.7
Dinv15908 Davidia involucrata HOM05D003675 ORTHO05D004318 5.8e-12 73.2 43 76.7
MELO3C002803.2 Cucumis melo HOM05D003675 ORTHO05D004318 7.6e-12 72.8 43 76.7
CsaV3_1G037400 Cucumis sativus L. HOM05D003675 ORTHO05D004318 7.6e-12 72.8 43 76.7
Rhsim13G0119800 Rhododendron simsii HOM05D003675 ORTHO05D004318 7.6e-12 72.8 43 74.4
arahy.Tifrunner.gnm1.ann1.71J8LW Arachis hypogaea HOM05D003675 ORTHO05D004318 1.0e-11 72.4 43 81.4
arahy.Tifrunner.gnm1.ann1.F8HCHG Arachis hypogaea HOM05D003675 ORTHO05D004318 1.0e-11 72.4 43 81.4
Cpa.g.sc17.78 Carica papaya HOM05D003675 ORTHO05D004318 1.0e-11 72.4 43 79.1
Aa31LG10G6660 Aethionema arabicum HOM05D003675 ORTHO05D004318 1.7e-11 71.6 43 79.1
CSS0048327 Camellia sinensis var. sinensis HOM05D003675 ORTHO05D004318 2.2e-11 71.2 43 76.7
CiPaw.10G086400 Carya illinoinensis HOM05D003675 ORTHO05D004318 2.9e-11 70.9 43 81.4
Psat1g019680 Pisum sativum HOM05D003675 ORTHO05D004318 3.8e-11 70.5 42 83.3
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 3.8e-11 70.5 42 83.3
Lj1C1164G14 Lonicera japonica HOM05D003675 ORTHO05D004318 5.0e-11 70.1 43 79.1
Ah.12g053620 Amaranthus hybridus HOM05D003675 ORTHO05D004318 6.5e-11 69.7 43 79.1
EL10Ac8g20233 Beta vulgaris HOM05D003675 ORTHO05D004318 6.5e-11 69.7 43 79.1
AUR62014439 Chenopodium quinoa HOM05D003675 ORTHO05D004318 6.5e-11 69.7 43 79.1
Haze_05761 Corylus avellana HOM05D003675 ORTHO05D004318 8.4e-11 69.3 43 79.1
Prupe.4G088900 Prunus persica HOM05D003675 ORTHO05D004318 8.4e-11 69.3 41 82.9
CiPaw.09G116500 Carya illinoinensis HOM05D003675 ORTHO05D004318 1.1e-10 68.9 43 81.4
MD05G1275000 Malus domestica HOM05D003675 ORTHO05D004318 1.1e-10 68.9 41 82.9
TAR627G0374 Trochodendron aralioides HOM05D003675 ORTHO05D004318 1.1e-10 68.9 42 69.0
Gohir.A12G045566 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.9e-10 68.2 43 76.7
Gohir.D12G044700 Gossypium hirsutum HOM05D003675 ORTHO05D004318 1.9e-10 68.2 43 76.7
Gorai.008G047100 Gossypium raimondii HOM05D003675 ORTHO05D004318 1.9e-10 68.2 43 76.7
HanXRQChr12g0385671 Helianthus annuus HOM05D003675 ORTHO05D004318 1.9e-10 68.2 42 71.4
Sed0017115 Sechium edule HOM05D003675 ORTHO05D004318 1.9e-10 68.2 43 69.8
Thecc.02G011900 Theobroma cacao HOM05D003675 ORTHO05D004318 1.9e-10 68.2 43 76.7
Cfa000847 Carpinus fangiana HOM05D003675 ORTHO05D004318 2.5e-10 67.8 43 76.7
MD10G1254500 Malus domestica HOM05D003675 ORTHO05D004318 3.2e-10 67.4 41 82.9
Solyc02g021620.3 Solanum lycopersicum HOM05D003675 ORTHO05D004318 4.2e-10 67.0 43 79.1
Sopen02g006170 Solanum pennellii HOM05D003675 ORTHO05D004318 4.2e-10 67.0 43 79.1
GSVIVG01021607001 Vitis vinifera HOM05D003675 ORTHO05D004318 4.2e-10 67.0 42 71.4
AUR62015052 Chenopodium quinoa HOM05D003675 ORTHO05D004318 5.5e-10 66.6 43 76.7
Duzib248G0664 Durio zibethinus HOM05D003675 ORTHO05D004318 7.1e-10 66.2 43 76.7
COL.COLO4_17678 Corchorus olitorius HOM05D003675 ORTHO05D004318 9.3e-10 65.9 43 74.4
Nn8g39842 Nelumbo nucifera HOM05D003675 ORTHO05D004318 9.3e-10 65.9 42 78.6
Sc24g0001490 Simmondsia chinensis HOM05D003675 ORTHO05D004318 1.2e-09 65.5 40 82.5
Duzib132G0867 Durio zibethinus HOM05D003675 ORTHO05D004318 1.6e-09 65.1 43 72.1
QL05p053600 Quercus lobata HOM05D003675 ORTHO05D004318 2.1e-09 64.7 43 74.4
SalBow7G0158 Salvia bowleyana HOM05D003675 ORTHO05D004318 2.1e-09 64.7 45 66.7
Lsat_1_v5_gn_4_241 Lactuca sativa HOM05D003675 ORTHO05D004318 4.6e-09 63.5 43 65.1
DCAR_027870 Daucus carota HOM05D003675 ORTHO05D004318 1.0e-08 62.4 42 66.7
Gohir.D02G238100 Gossypium hirsutum HOM05D003675 ORTHO05D004318 2.3e-08 61.2 43 65.1
Gorai.005G266600 Gossypium raimondii HOM05D003675 ORTHO05D004318 2.3e-08 61.2 43 65.1
Gohir.A03G216500 Gossypium hirsutum HOM05D003675 ORTHO05D004318 3.0e-08 60.8 43 65.1
vmacro03400 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 3.0e-08 60.8 39 74.4
vmacro23352 Vaccinium macrocarpon HOM05D003675 ORTHO05D004318 3.0e-08 60.8 39 74.4
CDE04G3079 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 3.9e-08 60.5 44 65.9
PSO675G7364 Papaver somniferum HOM05D003675 ORTHO05D004318 5.1e-08 60.1 44 63.6
Aqoxy3G00253 Aquilegia oxysepala HOM05D003675 ORTHO05D004318 6.7e-08 59.7 42 71.4
CDE07G0817 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 6.7e-08 59.7 45 64.4
Os01g0304100 Oryza sativa ssp. japonica HOM05D003675 ORTHO05D004318 1.1e-07 58.9 45 66.7
PSO675G2215 Papaver somniferum HOM05D003675 ORTHO05D004318 1.1e-07 58.9 44 63.6
Zm00001eb197200 Zea mays HOM05D003675 ORTHO05D004318 1.5e-07 58.5 50 60.0
MBI18_g11285_MAGBIO Magnolia biondii HOM05D003675 ORTHO05D004318 1.9e-07 58.2 44 63.6
ATR1098G088 Amborella trichopoda HOM05D003675 ORTHO05D004318 2.5e-07 57.8 45 64.4
Carub.0001s2862 Capsella rubella HOM05D003675 ORTHO05D004318 3.3e-07 57.4 30 83.3
Nn2g15671 Nelumbo nucifera HOM05D003675 ORTHO05D004318 4.3e-07 57.0 29 86.2
Hund06713 Selenicereus undatus HOM05D003675 ORTHO05D004318 5.7e-07 56.6 43 69.8
Nitab4.5_0005814g0050 Nicotiana tabacum HOM05D003675 ORTHO05D004318 1.3e-06 55.5 35 71.4
Pp3c13_9730 Physcomitrium patens HOM05D003675 ORTHO05D004318 2.2e-06 54.7 47 53.2
Pp3c13_9737 Physcomitrium patens HOM05D003675 ORTHO05D004318 2.2e-06 54.7 47 53.2
FvH4_3g09910 Fragaria vesca HOM05D003675 ORTHO05D004318 2.8e-06 54.3 41 65.9
FAN11G0336 Fragaria x ananassa HOM05D003675 ORTHO05D004318 2.8e-06 54.3 41 65.9
FAN16G2870 Fragaria x ananassa HOM05D003675 ORTHO05D004318 2.8e-06 54.3 41 65.9
FAN21G3951 Fragaria x ananassa HOM05D003675 ORTHO05D004318 2.8e-06 54.3 41 65.9
SMO141G0147 Selaginella moellendorffii HOM05D003675 ORTHO05D004318 8.2e-06 52.8 30 70.0
HPP92_017213 Vanilla planifolia HOM05D003675 ORTHO05D004318 8.2e-06 52.8 30 70.0


User provided reference genes

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