Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9952 Trifolium pratense HOM05D002489 ORTHO05D002653 5.2e-91 337.8 185 100.0
Psat5g224160 Pisum sativum HOM05D002489 ORTHO05D002653 2.1e-52 209.5 159 78.6
Medtr3g012030 Medicago truncatula HOM05D002489 ORTHO05D002653 1.7e-49 199.9 160 76.2
Ca_14212_v3 Cicer arietinum L. HOM05D002489 ORTHO05D002653 1.9e-45 186.4 162 73.5
Glyma.06G311400 Glycine max HOM05D002489 ORTHO05D002653 6.3e-36 154.8 164 63.4
arahy.Tifrunner.gnm1.ann1.M21JET Arachis hypogaea HOM05D002489 ORTHO05D002653 3.4e-34 149.1 172 59.9
arahy.Tifrunner.gnm1.ann1.1YL9TV Arachis hypogaea HOM05D002489 ORTHO05D002653 1.3e-33 147.1 170 58.8
Lj3g0021581 Lotus japonicus HOM05D002489 ORTHO05D002653 5.0e-33 145.2 138 64.5
Lalb_Chr18g0048111 Lupinus albus HOM05D002489 ORTHO05D002653 2.1e-31 139.8 162 64.2
Phvul.005G014300 Phaseolus vulgaris HOM05D002489 ORTHO05D002653 2.6e-29 132.9 161 59.0
Glyma.13G189400 Glycine max HOM05D002489 ORTHO05D002653 4.4e-29 132.1 161 60.2
Glyma.15G227300 Glycine max HOM05D002489 ORTHO05D002653 8.2e-28 127.9 168 57.1
FAN01G0190 Fragaria x ananassa HOM05D002489 ORTHO05D002653 5.9e-26 121.7 137 56.2
Lalb_Chr03g0032591 Lupinus albus HOM05D002489 ORTHO05D002653 5.9e-26 121.7 162 54.9
LjContig00430g0026017 Lotus japonicus HOM05D002489 ORTHO05D002653 7.7e-26 121.3 160 56.9
FvH4_7g04210 Fragaria vesca HOM05D002489 ORTHO05D002653 1.0e-25 120.9 137 56.2
FAN06G4066 Fragaria x ananassa HOM05D002489 ORTHO05D002653 1.0e-25 120.9 137 56.2
FAN03G2991 Fragaria x ananassa HOM05D002489 ORTHO05D002653 2.9e-25 119.4 138 55.8
RcHm_v2.0_Chr1g0328761 Rosa chinensis HOM05D002489 ORTHO05D002653 6.5e-25 118.2 150 50.7
FAN10G0477 Fragaria x ananassa HOM05D002489 ORTHO05D002653 1.9e-24 116.7 137 54.0
Gohir.A05G396200 Gossypium hirsutum HOM05D002489 ORTHO05D002653 1.9e-24 116.7 176 50.6
Gohir.D04G018800 Gossypium hirsutum HOM05D002489 ORTHO05D002653 1.9e-24 116.7 174 51.1
Gorai.012G022300 Gossypium raimondii HOM05D002489 ORTHO05D002653 2.1e-23 113.2 175 50.3
Duzib128G0493 Durio zibethinus HOM05D002489 ORTHO05D002653 2.7e-23 112.8 173 49.7
Gorai.010G215200 Gossypium raimondii HOM05D002489 ORTHO05D002653 1.8e-22 110.2 185 45.9
arahy.Tifrunner.gnm1.ann1.CT41QQ Arachis hypogaea HOM05D002489 ORTHO05D002653 3.0e-22 109.4 163 53.4
Duzib106G0143 Durio zibethinus HOM05D002489 ORTHO05D002653 3.0e-22 109.4 176 48.9
Gohir.D06G183800 Gossypium hirsutum HOM05D002489 ORTHO05D002653 3.0e-22 109.4 185 45.9
Thecc.10G138700 Theobroma cacao HOM05D002489 ORTHO05D002653 3.0e-22 109.4 176 48.9
Phvul.011G196500 Phaseolus vulgaris HOM05D002489 ORTHO05D002653 5.2e-22 108.6 164 53.7
Duzib114G0058 Durio zibethinus HOM05D002489 ORTHO05D002653 6.7e-22 108.2 175 48.6
Lalb_Chr19g0132861 Lupinus albus HOM05D002489 ORTHO05D002653 6.7e-22 108.2 161 52.8
Haze_02969 Corylus avellana HOM05D002489 ORTHO05D002653 8.8e-22 107.8 169 50.3
Medtr5g047770 Medicago truncatula HOM05D002489 ORTHO05D002653 8.8e-22 107.8 156 48.7
arahy.Tifrunner.gnm1.ann1.L34J1I Arachis hypogaea HOM05D002489 ORTHO05D002653 1.2e-21 107.5 163 52.8
Gohir.A06G173800 Gossypium hirsutum HOM05D002489 ORTHO05D002653 2.0e-21 106.7 183 44.3
Medtr8g041420 Medicago truncatula HOM05D002489 ORTHO05D002653 5.7e-21 105.1 176 47.7
Atru.chr4.883 Acer truncatum HOM05D002489 ORTHO05D002653 1.7e-20 103.6 162 47.5
Ciclev10002081m.g Citrus clementina HOM05D002489 ORTHO05D002653 1.7e-20 103.6 163 52.1
Sabra03G0143000 Salix brachista HOM05D002489 ORTHO05D002653 4.8e-20 102.1 150 46.0
VMungo1127G1287 Vigna mungo HOM05D002489 ORTHO05D002653 4.8e-20 102.1 160 52.5
Potri.003G192100 Populus trichocarpa HOM05D002489 ORTHO05D002653 6.3e-20 101.7 179 45.8
Prupe.2G047600 Prunus persica HOM05D002489 ORTHO05D002653 1.8e-19 100.1 165 41.2
Manes.04G155300 Manihot esculenta HOM05D002489 ORTHO05D002653 4.1e-19 99.0 183 43.7
QL04p021817 Quercus lobata HOM05D002489 ORTHO05D002653 4.5e-18 95.5 138 45.7
CiPaw.14G010800 Carya illinoinensis HOM05D002489 ORTHO05D002653 7.7e-18 94.7 165 46.7
Ca_24030_v3 Cicer arietinum L. HOM05D002489 ORTHO05D002653 1.0e-17 94.4 155 43.2
PGR031G2636 Punica granatum HOM05D002489 ORTHO05D002653 1.7e-17 93.6 139 48.9
Sabra01G0023600 Salix brachista HOM05D002489 ORTHO05D002653 5.0e-17 92.0 213 40.4
TWI15G0844 Tripterygium wilfordii HOM05D002489 ORTHO05D002653 1.1e-16 90.9 140 45.7
Psat4g189760 Pisum sativum HOM05D002489 ORTHO05D002653 1.5e-16 90.5 166 36.7
CiPaw.13G017100 Carya illinoinensis HOM05D002489 ORTHO05D002653 5.5e-16 88.6 103 51.5
Cfa010969 Carpinus fangiana HOM05D002489 ORTHO05D002653 7.2e-16 88.2 178 43.3
MD02G1273400 Malus domestica HOM05D002489 ORTHO05D002653 4.7e-15 85.5 181 36.5
vmacro04096 Vaccinium macrocarpon HOM05D002489 ORTHO05D002653 1.4e-14 84.0 162 42.0
Nn7g36989 Nelumbo nucifera HOM05D002489 ORTHO05D002653 2.3e-14 83.2 142 45.8
Manes.11G008800 Manihot esculenta HOM05D002489 ORTHO05D002653 4.0e-14 82.4 184 43.5
MBI13_g00894_MAGBIO Magnolia biondii HOM05D002489 ORTHO05D002653 5.2e-14 82.0 129 46.5
Dinv15412 Davidia involucrata HOM05D002489 ORTHO05D002653 6.8e-14 81.6 142 43.0
TWI63G0515 Tripterygium wilfordii HOM05D002489 ORTHO05D002653 2.0e-13 80.1 138 42.8
Actinidia07005 Actinidia chinensis HOM05D002489 ORTHO05D002653 2.6e-13 79.7 165 46.1
MBI19_g39605_MAGBIO Magnolia biondii HOM05D002489 ORTHO05D002653 2.6e-13 79.7 138 46.4
MD07G1042300 Malus domestica HOM05D002489 ORTHO05D002653 2.6e-13 79.7 173 35.8
Rhsim13G0202300 Rhododendron simsii HOM05D002489 ORTHO05D002653 3.4e-13 79.3 156 42.9
TPR.G2578 Trifolium pratense HOM05D002489 ORTHO05D002653 4.4e-13 79.0 111 49.5
TAR636G2122 Trochodendron aralioides HOM05D002489 ORTHO05D002653 4.4e-13 79.0 178 42.7
CSS0027937 Camellia sinensis var. sinensis HOM05D002489 ORTHO05D002653 7.5e-13 78.2 169 42.0
Cc00_g08160 Coffea canephora HOM05D002489 ORTHO05D002653 7.5e-13 78.2 140 40.7
Dinv31993 Davidia involucrata HOM05D002489 ORTHO05D002653 9.8e-13 77.8 125 44.0
Nn2g14603 Nelumbo nucifera HOM05D002489 ORTHO05D002653 9.8e-13 77.8 138 42.8
Potri.001G033200 Populus trichocarpa HOM05D002489 ORTHO05D002653 9.8e-13 77.8 190 40.5
COL.COLO4_21328 Corchorus olitorius HOM05D002489 ORTHO05D002653 1.3e-12 77.4 130 42.3
Rhsim07G0072000 Rhododendron simsii HOM05D002489 ORTHO05D002653 1.3e-12 77.4 156 40.4
Dinv02126 Davidia involucrata HOM05D002489 ORTHO05D002653 2.2e-12 76.6 124 41.1
PSO384G2450 Papaver somniferum HOM05D002489 ORTHO05D002653 2.8e-12 76.3 134 41.0
CsaV3_6G038670 Cucumis sativus L. HOM05D002489 ORTHO05D002653 1.4e-11 73.9 102 42.2
DCAR_006595 Daucus carota HOM05D002489 ORTHO05D002653 3.1e-11 72.8 133 36.8
GSVIVG01037394001 Vitis vinifera HOM05D002489 ORTHO05D002653 3.1e-11 72.8 178 41.0
vmacro13785 Vaccinium macrocarpon HOM05D002489 ORTHO05D002653 4.1e-11 72.4 156 41.0
Dinv31538 Davidia involucrata HOM05D002489 ORTHO05D002653 5.4e-11 72.0 124 40.3
MELO3C014530.2 Cucumis melo HOM05D002489 ORTHO05D002653 9.1e-11 71.2 102 40.2
MBI13_g00896_MAGBIO Magnolia biondii HOM05D002489 ORTHO05D002653 2.0e-10 70.1 78 51.3
TAR623G0883 Trochodendron aralioides HOM05D002489 ORTHO05D002653 2.0e-10 70.1 161 39.8
CANSAT56G2669 Cannabis sativa HOM05D002489 ORTHO05D002653 2.7e-10 69.7 159 35.8
Lj2C825G1 Lonicera japonica HOM05D002489 ORTHO05D002653 2.7e-10 69.7 125 39.2
ClCG02G022540 Citrullus lanatus HOM05D002489 ORTHO05D002653 1.0e-09 67.8 102 39.2
Haze_23547 Corylus avellana HOM05D002489 ORTHO05D002653 1.3e-09 67.4 178 41.0
CSS0044836 Camellia sinensis var. sinensis HOM05D002489 ORTHO05D002653 1.7e-09 67.0 145 35.2
Cc01_g07160 Coffea canephora HOM05D002489 ORTHO05D002653 2.3e-09 66.6 162 42.0
Oeu013452.1 Olea europaea HOM05D002489 ORTHO05D002653 2.3e-09 66.6 169 42.6
Oeu013061.1 Olea europaea HOM05D002489 ORTHO05D002653 8.6e-09 64.7 129 37.2
PSO675G1019 Papaver somniferum HOM05D002489 ORTHO05D002653 8.6e-09 64.7 145 34.5
Sed0016042 Sechium edule HOM05D002489 ORTHO05D002653 1.1e-08 64.3 163 38.0
Glyma.02G277000 Glycine max HOM05D002489 ORTHO05D002653 1.9e-08 63.5 125 37.6
ClCG11G013040 Citrullus lanatus HOM05D002489 ORTHO05D002653 2.5e-08 63.2 165 39.4
Lalb_Chr17g0347751 Lupinus albus HOM05D002489 ORTHO05D002653 2.5e-08 63.2 137 38.0
VMungo0647G2089 Vigna mungo HOM05D002489 ORTHO05D002653 2.5e-08 63.2 135 37.0
DCAR_025311 Daucus carota HOM05D002489 ORTHO05D002653 3.2e-08 62.8 135 31.1
Peaxi162Scf00978g00427 Petunia axillaris HOM05D002489 ORTHO05D002653 3.2e-08 62.8 163 41.1
Peaxi162Scf47032g00004 Petunia axillaris HOM05D002489 ORTHO05D002653 3.2e-08 62.8 163 41.1
CiPaw.14G108000 Carya illinoinensis HOM05D002489 ORTHO05D002653 4.2e-08 62.4 137 40.9
Eucgr.J00664 Eucalyptus grandis HOM05D002489 ORTHO05D002653 4.2e-08 62.4 162 38.9
Glyma.14G038800 Glycine max HOM05D002489 ORTHO05D002653 4.2e-08 62.4 114 36.0
Actinidia18374 Actinidia chinensis HOM05D002489 ORTHO05D002653 5.5e-08 62.0 158 37.3
MSTRG.12423 Avicennia marina HOM05D002489 ORTHO05D002653 7.2e-08 61.6 160 36.9
CAN.G280.1 Capsicum annuum HOM05D002489 ORTHO05D002653 7.2e-08 61.6 127 35.4
CsaV3_5G029530 Cucumis sativus L. HOM05D002489 ORTHO05D002653 7.2e-08 61.6 141 36.2
Sed0020453 Sechium edule HOM05D002489 ORTHO05D002653 9.5e-08 61.2 143 35.7
Peaxi162Scf00220g00230 Petunia axillaris HOM05D002489 ORTHO05D002653 1.2e-07 60.8 132 34.1
HanXRQChr03g0091651 Helianthus annuus HOM05D002489 ORTHO05D002653 1.6e-07 60.5 120 36.7
Hma1.2p1_1468F.1_g285540 Hydrangea macrophylla HOM05D002489 ORTHO05D002653 1.6e-07 60.5 94 38.3
Hma1.2p1_2592F.1_g325030 Hydrangea macrophylla HOM05D002489 ORTHO05D002653 1.6e-07 60.5 136 36.0
Phvul.008G204500 Phaseolus vulgaris HOM05D002489 ORTHO05D002653 1.6e-07 60.5 155 39.4
Migut.N02403 Erythranthe guttata HOM05D002489 ORTHO05D002653 2.1e-07 60.1 111 41.4
MELO3C011797.2 Cucumis melo HOM05D002489 ORTHO05D002653 2.8e-07 59.7 164 39.0
MSTRG.5082 Avicennia marina HOM05D002489 ORTHO05D002653 3.6e-07 59.3 135 33.3
PGR119G0475 Punica granatum HOM05D002489 ORTHO05D002653 3.6e-07 59.3 161 37.9
Aqoxy2G00026_Aqoxy2G00027 Aquilegia oxysepala HOM05D002489 ORTHO05D002653 6.1e-07 58.5 158 38.6
Lalb_Chr10g0106061 Lupinus albus HOM05D002489 ORTHO05D002653 6.1e-07 58.5 127 36.2
Psat0s3383g0080 Pisum sativum HOM05D002489 ORTHO05D002653 6.1e-07 58.5 78 48.7
Sed0021748 Sechium edule HOM05D002489 ORTHO05D002653 8.0e-07 58.2 111 36.9
Lsat_1_v5_gn_3_117840 Lactuca sativa HOM05D002489 ORTHO05D002653 1.0e-06 57.8 88 45.5
TAR633G1712 Trochodendron aralioides HOM05D002489 ORTHO05D002653 1.0e-06 57.8 179 33.5
Duzib168G0048 Durio zibethinus HOM05D002489 ORTHO05D002653 1.8e-06 57.0 123 35.8
Potri.001G225400 Populus trichocarpa HOM05D002489 ORTHO05D002653 1.8e-06 57.0 43 65.1
QL01p015995 Quercus lobata HOM05D002489 ORTHO05D002653 1.8e-06 57.0 169 38.5
Thecc.09G251300 Theobroma cacao HOM05D002489 ORTHO05D002653 1.8e-06 57.0 161 41.6
LjContig00564g0014208 Lotus japonicus HOM05D002489 ORTHO05D002653 2.3e-06 56.6 154 37.7
Nitab4.5_0002567g0120 Nicotiana tabacum HOM05D002489 ORTHO05D002653 2.3e-06 56.6 163 38.7
CANSAT54G0417 Cannabis sativa HOM05D002489 ORTHO05D002653 3.0e-06 56.2 169 35.5
PGSC0003DMG400027390 Solanum tuberosum HOM05D002489 ORTHO05D002653 4.0e-06 55.8 118 36.4
COL.COLO4_33264 Corchorus olitorius HOM05D002489 ORTHO05D002653 5.2e-06 55.5 125 32.0
SalBow3G1159 Salvia bowleyana HOM05D002489 ORTHO05D002653 6.8e-06 55.1 137 29.9
EL10Ac2g02715 Beta vulgaris HOM05D002489 ORTHO05D002653 8.8e-06 54.7 128 33.6


User provided reference genes

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