Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9938 Trifolium pratense HOM05D004537 ORTHO05D005492 8.4e-31 136.3 67 100.0
LjContig00315g0003687 Lotus japonicus HOM05D004537 ORTHO05D005492 1.4e-14 82.4 63 69.8
Lalb_Chr00c21g0405801 Lupinus albus HOM05D004537 ORTHO05D005492 1.4e-14 82.4 63 69.8
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.2e-14 81.3 57 75.4
Ca_30901_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.2e-14 81.3 57 75.4
Psat0s12108g0080 Pisum sativum HOM05D004537 ORTHO05D005492 3.2e-14 81.3 57 75.4
arahy.Tifrunner.gnm1.ann1.19WC2D Arachis hypogaea HOM05D004537 ORTHO05D005492 7.1e-14 80.1 57 73.7
arahy.Tifrunner.gnm1.ann1.FSQ0ED Arachis hypogaea HOM05D004537 ORTHO05D005492 7.1e-14 80.1 57 73.7
arahy.Tifrunner.gnm1.ann1.JYE7Y9 Arachis hypogaea HOM05D004537 ORTHO05D005492 7.1e-14 80.1 57 73.7
arahy.Tifrunner.gnm1.ann1.QL9R2N Arachis hypogaea HOM05D004537 ORTHO05D005492 7.1e-14 80.1 57 73.7
Cpa.g.sc263.4 Carica papaya HOM05D004537 ORTHO05D005492 1.1e-11 72.8 46 78.3
CDE02G4726 Ceratophyllum demersum HOM05D004537 ORTHO05D005492 1.1e-11 72.8 46 78.3
ClCG04G003500 Citrullus lanatus HOM05D004537 ORTHO05D005492 1.1e-11 72.8 46 78.3
HanXRQChr04g0127211 Helianthus annuus HOM05D004537 ORTHO05D005492 1.1e-11 72.8 46 78.3
Nn003s41396 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.1e-11 72.8 46 78.3
Nn1g09964 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.1e-11 72.8 46 78.3
Nn1g10090 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.1e-11 72.8 46 78.3
Nn1g10125 Nelumbo nucifera HOM05D004537 ORTHO05D005492 1.1e-11 72.8 46 78.3
QL10p061777 Quercus lobata HOM05D004537 ORTHO05D005492 1.1e-11 72.8 46 78.3
SHI26645 Sapria himalayana HOM05D004537 ORTHO05D005492 1.1e-11 72.8 46 78.3
Sed0009736 Sechium edule HOM05D004537 ORTHO05D005492 1.1e-11 72.8 46 78.3
Sed0024638 Sechium edule HOM05D004537 ORTHO05D005492 1.1e-11 72.8 46 78.3
Actinidia34915 Actinidia chinensis HOM05D004537 ORTHO05D005492 2.5e-11 71.6 46 78.3
Gorai.001G162500 Gossypium raimondii HOM05D004537 ORTHO05D005492 2.5e-11 71.6 46 78.3
HanXRQChr04g0127251 Helianthus annuus HOM05D004537 ORTHO05D005492 2.5e-11 71.6 46 76.1
RhsimMtG0000400 Rhododendron simsii HOM05D004537 ORTHO05D005492 2.5e-11 71.6 46 78.3
DCAR_032457 Daucus carota HOM05D004537 ORTHO05D005492 4.3e-11 70.9 46 78.3
HanXRQChr08g0236111 Helianthus annuus HOM05D004537 ORTHO05D005492 4.3e-11 70.9 46 78.3
HanXRQChr10g0310851 Helianthus annuus HOM05D004537 ORTHO05D005492 4.3e-11 70.9 46 78.3
HanXRQChr14g0433461 Helianthus annuus HOM05D004537 ORTHO05D005492 4.3e-11 70.9 46 78.3
HanXRQMTg0579341 Helianthus annuus HOM05D004537 ORTHO05D005492 4.3e-11 70.9 46 78.3
Aqoxy12s002 Aquilegia oxysepala HOM05D004537 ORTHO05D005492 7.4e-11 70.1 46 76.1
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 9.6e-11 69.7 50 74.0
CAN.G1109.10 Capsicum annuum HOM05D004537 ORTHO05D005492 1.3e-10 69.3 46 76.1
CAN.G78.1 Capsicum annuum HOM05D004537 ORTHO05D005492 1.3e-10 69.3 46 76.1
SalBow1G2743 Salvia bowleyana HOM05D004537 ORTHO05D005492 1.3e-10 69.3 46 76.1
Solyc00g500186.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.3e-10 69.3 46 76.1
Solyc00g500250.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.3e-10 69.3 46 76.1
Solyc00g500349.1 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.3e-10 69.3 46 76.1
Sopen05g012670 Solanum pennellii HOM05D004537 ORTHO05D005492 1.3e-10 69.3 46 76.1
SGA_v2.0_scaffold400G50927 Striga asiatica HOM05D004537 ORTHO05D005492 1.3e-10 69.3 46 76.1
Dinv06725 Davidia involucrata HOM05D004537 ORTHO05D005492 2.1e-10 68.6 46 76.1
Gohir.D04G096416 Gossypium hirsutum HOM05D004537 ORTHO05D005492 2.1e-10 68.6 50 72.0
QL04p031979 Quercus lobata HOM05D004537 ORTHO05D005492 2.1e-10 68.6 46 73.9
Gorai.013G213100 Gossypium raimondii HOM05D004537 ORTHO05D005492 2.8e-10 68.2 46 73.9
Nitab4.5_0001761g0020 Nicotiana tabacum HOM05D004537 ORTHO05D005492 4.8e-10 67.4 46 71.7
CAN.G61.11 Capsicum annuum HOM05D004537 ORTHO05D005492 6.2e-10 67.0 46 71.7
ATMG01360 Arabidopsis thaliana HOM05D004537 ORTHO05D005492 1.1e-09 66.2 46 73.9
A04p09350 Brassica napus HOM05D004537 ORTHO05D005492 1.1e-09 66.2 46 73.9
BolSC28t60367H Brassica oleracea HOM05D004537 ORTHO05D005492 1.1e-09 66.2 46 73.9
BraSC48t46236Z Brassica rapa HOM05D004537 ORTHO05D005492 1.1e-09 66.2 46 73.9
CANSAT16G0002 Cannabis sativa HOM05D004537 ORTHO05D005492 1.1e-09 66.2 46 73.9
CARHR283530 Cardamine hirsuta HOM05D004537 ORTHO05D005492 1.1e-09 66.2 46 73.9
CARHR288190 Cardamine hirsuta HOM05D004537 ORTHO05D005492 1.1e-09 66.2 46 73.9
Sp3g25790 Schrenkiella parvula HOM05D004537 ORTHO05D005492 1.1e-09 66.2 46 73.9
Nitab4.5_0000019g0180 Nicotiana tabacum HOM05D004537 ORTHO05D005492 1.4e-09 65.9 46 71.7
unitig_87.g28000 Utricularia gibba HOM05D004537 ORTHO05D005492 1.4e-09 65.9 46 73.9
Hma1.2p1_0136F.1_g062006 Hydrangea macrophylla HOM05D004537 ORTHO05D005492 1.8e-09 65.5 46 73.9
Solyc07g019510.4 Solanum lycopersicum HOM05D004537 ORTHO05D005492 1.8e-09 65.5 46 71.7
Ah.00g237940 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.4e-09 65.1 63 60.3
Ah.01g011750 Amaranthus hybridus HOM05D004537 ORTHO05D005492 2.4e-09 65.1 63 60.3
AUR62042353 Chenopodium quinoa HOM05D004537 ORTHO05D005492 3.1e-09 64.7 63 58.7
Ah.14g079610 Amaranthus hybridus HOM05D004537 ORTHO05D005492 4.0e-09 64.3 46 73.9
AUR62044038 Chenopodium quinoa HOM05D004537 ORTHO05D005492 5.3e-09 63.9 63 57.1
Sc08g0004810 Simmondsia chinensis HOM05D004537 ORTHO05D005492 5.3e-09 63.9 46 71.7
Nitab4.5_0001127g0230 Nicotiana tabacum HOM05D004537 ORTHO05D005492 6.9e-09 63.5 46 71.7
SabraMtG0005600 Salix brachista HOM05D004537 ORTHO05D005492 6.9e-09 63.5 45 73.3
SEGI_28485 Sequoiadendron giganteum HOM05D004537 ORTHO05D005492 6.9e-09 63.5 46 67.4
Aa31csc464G10 Aethionema arabicum HOM05D004537 ORTHO05D005492 1.2e-08 62.8 46 69.6
SHI36146 Sapria himalayana HOM05D004537 ORTHO05D005492 1.2e-08 62.8 46 71.7
AUR62026821 Chenopodium quinoa HOM05D004537 ORTHO05D005492 1.5e-08 62.4 63 57.1
RcHm_v2.0_Chr6g0256731 Rosa chinensis HOM05D004537 ORTHO05D005492 4.5e-08 60.8 46 69.6
RcHm_v2.0_MTg0498781 Rosa chinensis HOM05D004537 ORTHO05D005492 4.5e-08 60.8 46 69.6
SHI35293 Sapria himalayana HOM05D004537 ORTHO05D005492 4.5e-08 60.8 46 65.2
SHI26667 Sapria himalayana HOM05D004537 ORTHO05D005492 1.7e-07 58.9 57 61.4
Sed0020696 Sechium edule HOM05D004537 ORTHO05D005492 2.2e-07 58.5 45 68.9
CAN.G1103.8 Capsicum annuum HOM05D004537 ORTHO05D005492 2.9e-07 58.2 53 58.5
CAN.G416.37 Capsicum annuum HOM05D004537 ORTHO05D005492 3.8e-07 57.8 46 58.7
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 1.9e-06 55.5 63 49.2
Lsat_1_v5_gn_8_134521 Lactuca sativa HOM05D004537 ORTHO05D005492 1.9e-06 55.5 46 65.2
Pp3c4_28940 Physcomitrium patens HOM05D004537 ORTHO05D005492 7.1e-06 53.5 45 57.8
Pp3c4_28946 Physcomitrium patens HOM05D004537 ORTHO05D005492 7.1e-06 53.5 45 57.8
Solyc08g029280.2 Solanum lycopersicum HOM05D004537 ORTHO05D005492 9.3e-06 53.1 46 58.7


User provided reference genes

Program Settings