Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9912 Trifolium pratense HOM05D003798 ORTHO05D004652 3.8e-296 1020.8 528 100.0
Psat3g063960 Pisum sativum HOM05D003798 ORTHO05D004652 6.0e-265 917.1 530 90.8
Ca_08607_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 8.1e-262 906.7 526 88.4
Medtr7g095030 Medicago truncatula HOM05D003798 ORTHO05D004652 4.1e-250 867.8 526 86.7
Phvul.001G152400 Phaseolus vulgaris HOM05D003798 ORTHO05D004652 1.6e-238 829.3 510 84.9
VMungo1383G1837 Vigna mungo HOM05D003798 ORTHO05D004652 5.3e-237 824.3 510 84.5
Glyma.19G157300 Glycine max HOM05D003798 ORTHO05D004652 1.7e-235 819.3 512 84.2
Glyma.03G155100 Glycine max HOM05D003798 ORTHO05D004652 1.1e-234 816.6 512 84.2
Lj1g0003787 Lotus japonicus HOM05D003798 ORTHO05D004652 1.1e-221 773.5 502 81.1
Lj5g0015989 Lotus japonicus HOM05D003798 ORTHO05D004652 1.3e-214 750.0 516 76.6
Lalb_Chr06g0162961 Lupinus albus HOM05D003798 ORTHO05D004652 1.4e-213 746.5 507 76.1
arahy.Tifrunner.gnm1.ann1.Y8QVM3 Arachis hypogaea HOM05D003798 ORTHO05D004652 1.1e-207 726.9 531 72.5
arahy.Tifrunner.gnm1.ann1.PW6FZP Arachis hypogaea HOM05D003798 ORTHO05D004652 4.3e-207 724.9 530 72.5
Prupe.8G239400 Prunus persica HOM05D003798 ORTHO05D004652 6.7e-200 701.0 512 71.5
RcHm_v2.0_Chr6g0290801 Rosa chinensis HOM05D003798 ORTHO05D004652 8.2e-198 694.1 513 71.2
CANSAT25G1654 Cannabis sativa HOM05D003798 ORTHO05D004652 5.3e-197 691.4 528 70.3
Gohir.D11G128600 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.2e-196 690.3 512 71.3
Gorai.007G137600 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.2e-196 690.3 512 71.3
Thecc.01G277100 Theobroma cacao HOM05D003798 ORTHO05D004652 1.0e-195 687.2 512 70.5
Gohir.A11G123400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 1.3e-195 686.8 512 71.1
Dinv34765 Davidia involucrata HOM05D003798 ORTHO05D004652 4.7e-193 678.3 515 69.3
MD03G1263100 Malus domestica HOM05D003798 ORTHO05D004652 2.6e-191 672.5 512 68.8
FvH4_2g23360 Fragaria vesca HOM05D003798 ORTHO05D004652 9.7e-191 670.6 513 68.8
FAN24G3171 Fragaria x ananassa HOM05D003798 ORTHO05D004652 9.7e-191 670.6 513 68.8
Gohir.D08G204500 Gossypium hirsutum HOM05D003798 ORTHO05D004652 2.2e-190 669.5 503 69.6
MD11G1283900 Malus domestica HOM05D003798 ORTHO05D004652 2.8e-190 669.1 510 68.4
Cfa006156 Carpinus fangiana HOM05D003798 ORTHO05D004652 3.7e-190 668.7 513 69.2
FAN20G2449 Fragaria x ananassa HOM05D003798 ORTHO05D004652 3.7e-190 668.7 513 68.6
Dinv32922 Davidia involucrata HOM05D003798 ORTHO05D004652 4.8e-190 668.3 491 70.5
Potri.002G051800 Populus trichocarpa HOM05D003798 ORTHO05D004652 8.2e-190 667.5 513 69.4
Gorai.004G216500 Gossypium raimondii HOM05D003798 ORTHO05D004652 1.1e-189 667.2 503 69.6
Gohir.A08G186400 Gossypium hirsutum HOM05D003798 ORTHO05D004652 3.1e-189 665.6 503 69.6
QL12p021373 Quercus lobata HOM05D003798 ORTHO05D004652 5.3e-189 664.8 511 69.3
FAN27G1242 Fragaria x ananassa HOM05D003798 ORTHO05D004652 7.0e-189 664.5 513 68.4
Ciclev10019577m.g Citrus clementina HOM05D003798 ORTHO05D004652 1.1e-186 657.1 514 67.7
CsaV3_7G028050 Cucumis sativus L. HOM05D003798 ORTHO05D004652 4.2e-186 655.2 515 68.0
CiPaw.07G090900 Carya illinoinensis HOM05D003798 ORTHO05D004652 2.1e-185 652.9 526 67.7
FAN15G2405 Fragaria x ananassa HOM05D003798 ORTHO05D004652 1.8e-184 649.8 514 67.1
PGR119G1379 Punica granatum HOM05D003798 ORTHO05D004652 9.7e-183 644.0 517 65.0
TAR636G1714 Trochodendron aralioides HOM05D003798 ORTHO05D004652 2.2e-182 642.9 514 67.5
CSS0049215 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 4.8e-182 641.7 520 66.9
ClCG09G007110 Citrullus lanatus HOM05D003798 ORTHO05D004652 1.8e-181 639.8 541 64.3
Potri.005G210500 Populus trichocarpa HOM05D003798 ORTHO05D004652 9.1e-181 637.5 504 67.3
GSVIVG01001160001 Vitis vinifera HOM05D003798 ORTHO05D004652 5.9e-180 634.8 519 66.5
CSS0013750 Camellia sinensis var. sinensis HOM05D003798 ORTHO05D004652 2.2e-179 632.9 559 62.4
Eucgr.H01469 Eucalyptus grandis HOM05D003798 ORTHO05D004652 1.5e-178 630.2 476 68.5
Rhsim13G0025900 Rhododendron simsii HOM05D003798 ORTHO05D004652 1.6e-177 626.7 498 66.1
vmacro02581 Vaccinium macrocarpon HOM05D003798 ORTHO05D004652 2.1e-177 626.3 517 64.6
Manes.05G077300 Manihot esculenta HOM05D003798 ORTHO05D004652 4.0e-176 622.1 428 72.7
TWI23G0664 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 2.4e-173 612.8 522 63.4
Medtr4g095000 Medicago truncatula HOM05D003798 ORTHO05D004652 2.7e-172 609.4 354 87.0
Lj2A1170T17 Lonicera japonica HOM05D003798 ORTHO05D004652 6.6e-171 604.7 532 61.8
Nn4g26293 Nelumbo nucifera HOM05D003798 ORTHO05D004652 6.6e-171 604.7 505 63.4
ECA248G1795 Erigeron canadensis HOM05D003798 ORTHO05D004652 1.2e-164 583.9 509 60.9
Sabra05G0160700 Salix brachista HOM05D003798 ORTHO05D004652 5.9e-164 581.6 545 60.9
Lsat_1_v5_gn_5_184661 Lactuca sativa HOM05D003798 ORTHO05D004652 4.3e-162 575.5 499 60.9
Duzib133G0734 Durio zibethinus HOM05D003798 ORTHO05D004652 5.6e-162 575.1 512 62.7
Sed0016197 Sechium edule HOM05D003798 ORTHO05D004652 7.3e-162 574.7 508 61.6
Aqoxy2G03370 Aquilegia oxysepala HOM05D003798 ORTHO05D004652 2.8e-161 572.8 477 62.9
Sc05g0005620 Simmondsia chinensis HOM05D003798 ORTHO05D004652 4.7e-161 572.0 508 61.2
DCAR_002728 Daucus carota HOM05D003798 ORTHO05D004652 8.0e-161 571.2 505 60.8
Haze_04695 Corylus avellana HOM05D003798 ORTHO05D004652 2.3e-160 569.7 519 61.1
Migut.D00308 Erythranthe guttata HOM05D003798 ORTHO05D004652 2.2e-158 563.1 511 60.9
Oeu047871.2 Olea europaea HOM05D003798 ORTHO05D004652 1.4e-157 560.5 565 56.1
HanXRQChr01g0003001 Helianthus annuus HOM05D003798 ORTHO05D004652 2.5e-154 549.7 503 60.2
HanXRQChr15g0466731 Helianthus annuus HOM05D003798 ORTHO05D004652 2.8e-153 546.2 497 59.8
MELO3C015825.2 Cucumis melo HOM05D003798 ORTHO05D004652 1.4e-152 543.9 395 70.6
Actinidia09127 Actinidia chinensis HOM05D003798 ORTHO05D004652 9.2e-149 531.2 484 59.9
TWI59G0387 Tripterygium wilfordii HOM05D003798 ORTHO05D004652 1.6e-148 530.4 518 57.5
SGA_v2.0_scaffold1G00488 Striga asiatica HOM05D003798 ORTHO05D004652 6.6e-147 525.0 500 57.0
Lj1A47G33 Lonicera japonica HOM05D003798 ORTHO05D004652 2.4e-141 506.5 517 54.4
CAN.G1549.7 Capsicum annuum HOM05D003798 ORTHO05D004652 2.1e-140 503.4 408 64.7
arahy.Tifrunner.gnm1.ann1.SSYA5T Arachis hypogaea HOM05D003798 ORTHO05D004652 6.2e-137 491.9 448 59.8
PSO761G0144 Papaver somniferum HOM05D003798 ORTHO05D004652 6.2e-137 491.9 486 56.0
PSO210G1981 Papaver somniferum HOM05D003798 ORTHO05D004652 2.4e-136 490.0 477 55.8
unitig_749.g13741 Utricularia gibba HOM05D003798 ORTHO05D004652 5.8e-135 485.3 424 58.7
Nitab4.5_0000759g0210 Nicotiana tabacum HOM05D003798 ORTHO05D004652 4.7e-129 465.7 545 51.6
arahy.Tifrunner.gnm1.ann1.97IXSS Arachis hypogaea HOM05D003798 ORTHO05D004652 7.6e-127 458.4 398 61.8
Cpa.g.sc52.47 Carica papaya HOM05D003798 ORTHO05D004652 5.4e-125 452.2 338 68.3
Actinidia00771 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.0e-123 448.0 344 67.4
ATR0332G031 Amborella trichopoda HOM05D003798 ORTHO05D004652 1.3e-123 447.6 494 50.0
COL.COLO4_09077 Corchorus olitorius HOM05D003798 ORTHO05D004652 7.9e-116 421.8 501 51.1
THA.LOC104801240 Tarenaya hassleriana HOM05D003798 ORTHO05D004652 3.8e-94 349.7 455 45.1
MELO3C015827.2 Cucumis melo HOM05D003798 ORTHO05D004652 5.5e-93 345.9 401 52.1
Lsat_1_v5_gn_8_56480 Lactuca sativa HOM05D003798 ORTHO05D004652 2.7e-92 343.6 492 44.5
C09p02260 Brassica napus HOM05D003798 ORTHO05D004652 8.5e-78 295.4 439 39.4
BcaC04g24012 Brassica carinata HOM05D003798 ORTHO05D004652 2.5e-77 293.9 427 40.3
Sp6g02720 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.2e-77 293.1 423 42.8
AT4G02760 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 6.1e-76 289.3 453 41.1
A09p02180 Brassica napus HOM05D003798 ORTHO05D004652 1.8e-75 287.7 437 40.0
Carub.0006s3430 Capsella rubella HOM05D003798 ORTHO05D004652 6.7e-75 285.8 487 39.6
AL6G50180 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.8e-75 285.4 463 40.6
BcaB01g02007 Brassica carinata HOM05D003798 ORTHO05D004652 8.8e-75 285.4 459 39.2
Thhalv10028579m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.3e-74 283.5 449 39.9
AL6G50220 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 2.8e-73 280.4 440 40.5
Sp6g02780 Schrenkiella parvula HOM05D003798 ORTHO05D004652 2.8e-73 280.4 512 36.5
AL6G50260 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 6.3e-73 279.3 425 39.5
AT4G02740 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 4.1e-72 276.6 442 39.4
BolC9t53155H Brassica oleracea HOM05D003798 ORTHO05D004652 7.0e-72 275.8 436 39.4
BraA09t35866Z Brassica rapa HOM05D003798 ORTHO05D004652 1.3e-70 271.6 438 38.6
Carub.0006s3435 Capsella rubella HOM05D003798 ORTHO05D004652 2.9e-70 270.4 453 38.0
Nitab4.5_0007361g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 6.5e-70 269.2 272 56.2
CARHR251100 Cardamine hirsuta HOM05D003798 ORTHO05D004652 5.5e-69 266.2 430 40.2
BcaC01g06734 Brassica carinata HOM05D003798 ORTHO05D004652 3.4e-66 256.9 440 38.9
Carub.0006s3431 Capsella rubella HOM05D003798 ORTHO05D004652 5.7e-66 256.1 451 39.5
Sp6g02760 Schrenkiella parvula HOM05D003798 ORTHO05D004652 9.7e-66 255.4 426 38.3
C03p37600 Brassica napus HOM05D003798 ORTHO05D004652 1.3e-65 255.0 440 38.6
CARHR251130 Cardamine hirsuta HOM05D003798 ORTHO05D004652 3.7e-65 253.4 389 42.9
Aa31LG5G2380 Aethionema arabicum HOM05D003798 ORTHO05D004652 7.0e-64 249.2 402 39.1
C03p37610 Brassica napus HOM05D003798 ORTHO05D004652 2.0e-63 247.7 439 39.0
C03p37640 Brassica napus HOM05D003798 ORTHO05D004652 2.0e-63 247.7 440 37.0
BcaC01g06735 Brassica carinata HOM05D003798 ORTHO05D004652 3.5e-63 246.9 440 36.6
BolC3t16054H Brassica oleracea HOM05D003798 ORTHO05D004652 4.5e-63 246.5 440 36.8
Sp6g02730 Schrenkiella parvula HOM05D003798 ORTHO05D004652 5.9e-63 246.1 390 39.7
Atru.chr5.1458 Acer truncatum HOM05D003798 ORTHO05D004652 7.7e-63 245.7 195 69.2
A09p02170 Brassica napus HOM05D003798 ORTHO05D004652 2.2e-62 244.2 406 38.7
Thhalv10029278m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 2.2e-62 244.2 445 38.2
BraA09t35865Z Brassica rapa HOM05D003798 ORTHO05D004652 8.5e-62 242.3 406 38.7
Carub.0006s3432 Capsella rubella HOM05D003798 ORTHO05D004652 8.5e-62 242.3 434 37.8
BraA03t12264Z Brassica rapa HOM05D003798 ORTHO05D004652 1.2e-60 238.4 438 37.4
DCAR_012485 Daucus carota HOM05D003798 ORTHO05D004652 2.0e-58 231.1 489 35.2
Carub.0006s3436 Capsella rubella HOM05D003798 ORTHO05D004652 9.8e-58 228.8 400 37.0
Lsat_1_v5_gn_9_3521 Lactuca sativa HOM05D003798 ORTHO05D004652 3.1e-56 223.8 420 37.1
C03p37620 Brassica napus HOM05D003798 ORTHO05D004652 5.4e-56 223.0 484 34.7
BolC3t16051H Brassica oleracea HOM05D003798 ORTHO05D004652 4.5e-55 219.9 414 37.4
Pp3c6_19750 Physcomitrium patens HOM05D003798 ORTHO05D004652 7.7e-55 219.2 332 38.3
A03p30870 Brassica napus HOM05D003798 ORTHO05D004652 1.9e-53 214.5 438 33.8
CBR_g46206 Chara braunii HOM05D003798 ORTHO05D004652 9.5e-53 212.2 468 33.8
AL6G50250 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.0e-52 209.1 394 35.5
Cpa.g.sc52.48 Carica papaya HOM05D003798 ORTHO05D004652 2.9e-46 190.7 160 66.2
Thhalv10029415m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.9e-45 188.0 412 33.3
Lsat_1_v5_gn_4_62701 Lactuca sativa HOM05D003798 ORTHO05D004652 5.6e-45 186.4 151 61.6
Lsat_1_v5_gn_8_57021 Lactuca sativa HOM05D003798 ORTHO05D004652 9.8e-42 175.6 408 31.9
AT4G02733 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 8.3e-41 172.6 276 38.4
AT4G08535 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 1.4e-40 171.8 270 40.7
VMungo1383G1292 Vigna mungo HOM05D003798 ORTHO05D004652 2.0e-39 167.9 92 87.0
AT4G02735 Arabidopsis thaliana HOM05D003798 ORTHO05D004652 5.0e-38 163.3 390 31.8
CARHR251080 Cardamine hirsuta HOM05D003798 ORTHO05D004652 6.8e-35 152.9 239 38.9
Sp6g02700 Schrenkiella parvula HOM05D003798 ORTHO05D004652 4.4e-34 150.2 280 37.1
Lsat_1_v5_gn_4_100581 Lactuca sativa HOM05D003798 ORTHO05D004652 1.4e-32 145.2 108 63.9
Lj2A1170T18 Lonicera japonica HOM05D003798 ORTHO05D004652 6.6e-30 136.3 190 45.3
Nitab4.5_0024519g0010 Nicotiana tabacum HOM05D003798 ORTHO05D004652 2.1e-28 131.3 214 41.6
BcaB07g33030 Brassica carinata HOM05D003798 ORTHO05D004652 1.8e-27 128.3 157 49.0
Actinidia24901 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.4e-25 119.8 254 35.4
BraA03t12263Z Brassica rapa HOM05D000596 ORTHO05D002115 8.3e-25 119.4 178 41.0
A03p30850 Brassica napus HOM05D000596 ORTHO05D002115 3.2e-24 117.5 178 40.4
C06p11970 Brassica napus HOM05D003798 ORTHO05D004652 5.4e-24 116.7 150 46.0
Ca_10811_v3 Cicer arietinum L. HOM05D003798 ORTHO05D004652 9.2e-24 115.9 78 76.9
BolC6t36334H Brassica oleracea HOM05D003798 ORTHO05D004652 1.0e-22 112.5 143 46.2
Thhalv10029301m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 1.9e-21 108.2 105 52.4
VMungo1080G0763 Vigna mungo HOM05D003798 ORTHO05D004652 9.6e-21 105.9 58 87.9
AL1084U10010 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 8.1e-20 102.8 118 42.4
Glyma.06G258700 Glycine max HOM05D003798 ORTHO05D004652 8.1e-20 102.8 72 76.4
Actinidia00759 Actinidia chinensis HOM05D003798 ORTHO05D004652 1.1e-19 102.4 109 51.4
BcaC04g21277 Brassica carinata HOM05D040525 ORTHO05D023659 2.6e-18 97.8 312 30.1
SEGI_05001 Sequoiadendron giganteum HOM05D003798 ORTHO05D004652 2.6e-18 97.8 171 34.5
Aa31LG8G1370 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.3e-17 95.5 381 27.6
Lsat_1_v5_gn_7_8121 Lactuca sativa HOM05D003798 ORTHO05D004652 6.4e-17 93.2 144 41.7
HanXRQChr10g0281951 Helianthus annuus HOM05D003798 ORTHO05D006066 1.2e-15 89.0 65 61.5
Actinidia00770 Actinidia chinensis HOM05D003798 ORTHO05D004652 4.6e-15 87.0 61 60.7
BcaC01g06733 Brassica carinata HOM05D003798 ORTHO05D032066 3.9e-14 84.0 100 43.0
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 5.1e-14 83.6 297 25.9
BolC6t36333H Brassica oleracea HOM05D003798 ORTHO05D004652 6.6e-14 83.2 117 43.6
Lsat_1_v5_gn_4_80681 Lactuca sativa HOM05D003798 ORTHO05D004652 2.5e-13 81.3 59 64.4
Aa31sc472G30 Aethionema arabicum HOM05D003798 ORTHO05D004652 1.3e-12 79.0 208 31.2
Rhsim02G0147100 Rhododendron simsii HOM05D003798 ORTHO05D004652 2.1e-12 78.2 80 53.8
Hma1.2p1_1168F.1_g263140 Hydrangea macrophylla HOM05D003798 ORTHO05D004652 2.8e-12 77.8 56 64.3
Thhalv10029382m.g Eutrema salsugineum HOM05D003798 ORTHO05D004652 3.6e-12 77.4 115 38.3
BolC9t53154H Brassica oleracea HOM05D003798 ORTHO05D004652 8.1e-12 76.3 125 39.2
AL1G36770 Arabidopsis lyrata HOM05D003496 ORTHO05D023659 1.4e-11 75.5 181 27.6
Ca_23751_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 1.2e-10 72.4 53 69.8
Ca_27492_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 1.2e-10 72.4 53 69.8
Aqoxy1G03386 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.5e-10 72.0 81 50.6
arahy.Tifrunner.gnm1.ann1.FYU6J1 Arachis hypogaea HOM05D000331 ORTHO05D021523 3.4e-10 70.9 94 44.7
arahy.Tifrunner.gnm1.ann1.E8A0WP Arachis hypogaea HOM05D003798 ORTHO05D021523 7.6e-10 69.7 60 56.7
BolC3t16050H Brassica oleracea HOM05D003798 ORTHO05D032066 9.9e-10 69.3 150 34.7
Medtr7g094400 Medicago truncatula HOM05D003798 ORTHO05D004652 1.3e-09 68.9 79 50.6
C03p37590 Brassica napus HOM05D003798 ORTHO05D032066 8.4e-09 66.2 145 33.8
Sp6g02770 Schrenkiella parvula HOM05D009848 ORTHO05D011321 1.1e-08 65.9 63 50.8
Actinidia00760 Actinidia chinensis HOM05D003798 ORTHO05D004652 9.3e-08 62.8 44 63.6
AL2G38120 Arabidopsis lyrata HOM05D003798 ORTHO05D004652 1.6e-07 62.0 123 30.1
BcaB05g23891 Brassica carinata HOM05D003798 ORTHO05D004652 4.6e-07 60.5 125 31.2
Actinidia24900 Actinidia chinensis HOM05D003798 ORTHO05D004652 6.6e-06 56.6 83 42.2


User provided reference genes

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