Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9895 Trifolium pratense HOM05D007908 ORTHO05D009653 9.6e-59 229.9 115 100.0
PSO063G3207 Papaver somniferum HOM05D007908 ORTHO05D009653 1.4e-30 136.3 134 53.0
Ca_03379_v3 Cicer arietinum L. HOM05D007908 ORTHO05D009653 3.5e-29 131.7 104 67.3
CiPaw.14G112700 Carya illinoinensis HOM05D007908 ORTHO05D009653 1.9e-27 125.9 126 54.0
CiPaw.07G046700 Carya illinoinensis HOM05D007908 ORTHO05D009653 5.7e-27 124.4 126 53.2
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 5.7e-27 124.4 133 49.6
TWI15G0389 Tripterygium wilfordii HOM05D007908 ORTHO05D009653 1.3e-26 123.2 133 48.9
TWI73G0060 Tripterygium wilfordii HOM05D007908 ORTHO05D009653 1.3e-26 123.2 133 48.9
TWI77G1008 Tripterygium wilfordii HOM05D007908 ORTHO05D009653 1.3e-26 123.2 133 48.9
Ciclev10003571m.g Citrus clementina HOM05D007908 ORTHO05D009653 2.8e-26 122.1 106 58.5
Ciclev10010619m.g Citrus clementina HOM05D007908 ORTHO05D009653 1.5e-24 116.3 132 47.7
Medtr2g023980 Medicago truncatula HOM05D000131 ORTHO05D000086 1.5e-24 116.3 86 72.1
TWI18G0422 Tripterygium wilfordii HOM05D007908 ORTHO05D009653 1.5e-24 116.3 133 46.6
TWI38G1015 Tripterygium wilfordii HOM05D007908 ORTHO05D009653 7.6e-24 114.0 120 50.8
Potri.006G109250 Populus trichocarpa HOM05D007908 ORTHO05D009653 1.7e-23 112.8 123 47.2
Potri.004G133001 Populus trichocarpa HOM05D007908 ORTHO05D009653 5.0e-23 111.3 123 47.2
CiPaw.12G035000 Carya illinoinensis HOM05D007908 ORTHO05D009653 1.4e-22 109.8 132 45.5
PGSC0003DMG400015663 Solanum tuberosum HOM05D007908 ORTHO05D009653 4.2e-22 108.2 130 46.9
Nn7g36623 Nelumbo nucifera HOM05D000793 ORTHO05D001191 5.5e-22 107.8 130 46.9
CiPaw.03G001800 Carya illinoinensis HOM05D007908 ORTHO05D009653 9.3e-22 107.1 133 44.4
Nn4g25076 Nelumbo nucifera HOM05D000414 ORTHO05D009653 9.3e-22 107.1 130 45.4
Rhsim05G0128700 Rhododendron simsii HOM05D007908 ORTHO05D009653 1.2e-21 106.7 133 43.6
CiPaw.01G307800 Carya illinoinensis HOM05D007908 ORTHO05D009653 2.1e-21 105.9 133 44.4
CiPaw.04G138200 Carya illinoinensis HOM05D007908 ORTHO05D009653 1.3e-20 103.2 125 46.4
TAR237G0001 Trochodendron aralioides HOM05D000002 ORTHO05D000001 2.3e-20 102.4 118 45.8
TWI18G0694 Tripterygium wilfordii HOM05D007908 ORTHO05D009653 5.7e-19 97.8 133 44.4
Hma1.2p1_0303F.1_g118800 Hydrangea macrophylla HOM05D007908 ORTHO05D009653 3.7e-18 95.1 131 38.2
Rhsim04G0131100 Rhododendron simsii HOM05D007908 ORTHO05D009653 8.2e-18 94.0 120 43.3
Rhsim05G0013600 Rhododendron simsii HOM05D007908 ORTHO05D009653 7.7e-16 87.4 130 33.8
Rhsim13G0148200 Rhododendron simsii HOM05D007908 ORTHO05D009653 7.7e-16 87.4 130 33.8
RhsimUnG0157400 Rhododendron simsii HOM05D007908 ORTHO05D009653 7.7e-16 87.4 130 33.8
RhsimUnG0057000 Rhododendron simsii HOM05D007908 ORTHO05D009653 2.2e-15 85.9 130 33.1
PSO754G0013 Papaver somniferum HOM05D007230 ORTHO05D004756 5.5e-14 81.3 101 43.6
SHI21396 Sapria himalayana HOM05D000002 ORTHO05D009653 9.4e-14 80.5 54 70.4
PSO782G2577 Papaver somniferum HOM05D000002 ORTHO05D004756 1.2e-13 80.1 129 38.8
SHI01628 Sapria himalayana HOM05D000002 ORTHO05D009653 1.6e-13 79.7 61 65.6
SHI50483 Sapria himalayana HOM05D000002 ORTHO05D000001 2.7e-13 79.0 97 43.3
Ca_03884_v3 Cicer arietinum L. HOM05D007908 ORTHO05D009653 3.6e-13 78.6 65 56.9
PSO210G6349 Papaver somniferum HOM05D007908 ORTHO05D009653 7.9e-13 77.4 44 81.8
PSO339G2863 Papaver somniferum HOM05D007908 ORTHO05D009653 7.9e-13 77.4 44 81.8
PSO210G6560 Papaver somniferum HOM05D007908 ORTHO05D009653 1.0e-12 77.0 44 81.8
Hma1.2p1_0362F.1_g136380 Hydrangea macrophylla HOM05D007908 ORTHO05D009653 1.4e-12 76.6 91 48.4
Actinidia05629 Actinidia chinensis HOM05D007230 ORTHO05D004756 1.8e-12 76.3 111 38.7
SHI40782 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-12 75.9 102 42.2
Hma1.2p1_1664F.1_g296430 Hydrangea macrophylla HOM05D007908 ORTHO05D009653 3.9e-12 75.1 64 56.2
Hma1.2p1_3592F.1_g336930 Hydrangea macrophylla HOM05D007908 ORTHO05D009653 3.9e-12 75.1 64 56.2
CAN.G541.33 Capsicum annuum HOM05D007908 ORTHO05D009653 6.7e-12 74.3 120 39.2
COL.COLO4_36632 Corchorus olitorius HOM05D000002 ORTHO05D004756 8.8e-12 73.9 136 35.3
SHI03432 Sapria himalayana HOM05D007230 ORTHO05D004756 8.8e-12 73.9 125 37.6
SHI17244 Sapria himalayana HOM05D007230 ORTHO05D004756 8.8e-12 73.9 125 37.6
SHI28040 Sapria himalayana HOM05D000002 ORTHO05D000001 8.8e-12 73.9 125 37.6
SHI41657 Sapria himalayana HOM05D000002 ORTHO05D004756 8.8e-12 73.9 125 37.6
SHI47374 Sapria himalayana HOM05D000002 ORTHO05D000001 8.8e-12 73.9 125 38.4
COL.COLO4_28935 Corchorus olitorius HOM05D007230 ORTHO05D004756 1.5e-11 73.2 124 36.3
SHI36897 Sapria himalayana HOM05D000002 ORTHO05D004756 1.5e-11 73.2 122 38.5
TPR.G34217 Trifolium pratense HOM05D007908 ORTHO05D009653 1.5e-11 73.2 57 56.1
Nn2g14544 Nelumbo nucifera HOM05D007908 ORTHO05D009653 2.0e-11 72.8 58 62.1
SHI02527 Sapria himalayana HOM05D007230 ORTHO05D004756 2.0e-11 72.8 125 37.6
SHI09402 Sapria himalayana HOM05D007230 ORTHO05D004756 2.0e-11 72.8 125 36.8
CSS0040816 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 2.5e-11 72.4 105 37.1
SHI06223 Sapria himalayana HOM05D000002 ORTHO05D000001 2.5e-11 72.4 125 36.8
Psat5g083840 Pisum sativum HOM05D007230 ORTHO05D004756 4.3e-11 71.6 120 35.0
Psat7g056280 Pisum sativum HOM05D007230 ORTHO05D004756 4.3e-11 71.6 120 35.8
COL.COLO4_20910 Corchorus olitorius HOM05D000002 ORTHO05D004756 5.7e-11 71.2 124 35.5
MD02G1156200 Malus domestica HOM05D000002 ORTHO05D004756 5.7e-11 71.2 121 34.7
SHI02112 Sapria himalayana HOM05D000002 ORTHO05D000001 5.7e-11 71.2 125 36.0
SHI39742 Sapria himalayana HOM05D000002 ORTHO05D000001 5.7e-11 71.2 125 36.8
SHI18717 Sapria himalayana HOM05D007230 ORTHO05D004756 7.4e-11 70.9 125 36.8
Aqoxy5G03695 Aquilegia oxysepala HOM05D000002 ORTHO05D004756 9.7e-11 70.5 117 38.5
SHI05604 Sapria himalayana HOM05D000002 ORTHO05D000001 9.7e-11 70.5 125 36.0
CAN.G243.9 Capsicum annuum HOM05D007908 ORTHO05D009653 1.3e-10 70.1 120 37.5
CAN.G647.27 Capsicum annuum HOM05D007908 ORTHO05D009653 1.3e-10 70.1 132 34.8
SHI49499 Sapria himalayana HOM05D000002 ORTHO05D000001 1.7e-10 69.7 125 36.0
Psat1g026880 Pisum sativum HOM05D007230 ORTHO05D004756 2.8e-10 68.9 120 34.2
Psat2g117040 Pisum sativum HOM05D007230 ORTHO05D004756 2.8e-10 68.9 106 36.8
SHI32448 Sapria himalayana HOM05D000002 ORTHO05D000001 2.8e-10 68.9 125 36.8
CiPaw.05G144600 Carya illinoinensis HOM05D007908 ORTHO05D009653 3.7e-10 68.6 48 70.8
SHI16498 Sapria himalayana HOM05D000002 ORTHO05D000001 6.3e-10 67.8 125 36.0
PGSC0003DMG400045810 Solanum tuberosum HOM05D007908 ORTHO05D009653 6.3e-10 67.8 129 32.6
SHI26640 Sapria himalayana HOM05D007230 ORTHO05D004756 8.2e-10 67.4 122 35.2
CSS0008768 Camellia sinensis var. sinensis HOM05D010459 ORTHO05D004756 1.1e-09 67.0 125 33.6
CSS0016560 Camellia sinensis var. sinensis HOM05D010459 ORTHO05D004756 1.1e-09 67.0 125 33.6
CSS0046673 Camellia sinensis var. sinensis HOM05D010459 ORTHO05D004756 1.1e-09 67.0 125 33.6
CSS0047750 Camellia sinensis var. sinensis HOM05D010459 ORTHO05D004756 1.1e-09 67.0 125 33.6
PSO675G0495 Papaver somniferum HOM05D007230 ORTHO05D004756 1.1e-09 67.0 121 32.2
SHI04462 Sapria himalayana HOM05D000002 ORTHO05D004756 1.1e-09 67.0 125 35.2
Rhsim11G0061100 Rhododendron simsii HOM05D007908 ORTHO05D009653 1.4e-09 66.6 60 53.3
Rhsim11G0062800 Rhododendron simsii HOM05D007908 ORTHO05D009653 1.4e-09 66.6 60 53.3
VMungo0720G1130 Vigna mungo HOM05D024021 ORTHO05D009653 1.4e-09 66.6 98 36.7
Psat5g096840 Pisum sativum HOM05D007230 ORTHO05D004756 1.8e-09 66.2 120 32.5
QL08p048522 Quercus lobata HOM05D000002 ORTHO05D000001 1.8e-09 66.2 136 33.1
CiPaw.05G162200 Carya illinoinensis HOM05D009267 ORTHO05D010384 3.1e-09 65.5 45 66.7
MELO3C031197.2 Cucumis melo HOM05D007230 ORTHO05D004756 4.1e-09 65.1 121 35.5
PSO144G0017 Papaver somniferum HOM05D007230 ORTHO05D004756 4.1e-09 65.1 118 33.9
QL04p097278 Quercus lobata HOM05D000002 ORTHO05D000001 4.1e-09 65.1 136 32.4
QL10p052423 Quercus lobata HOM05D000002 ORTHO05D000001 4.1e-09 65.1 136 32.4
QL11p016059 Quercus lobata HOM05D000002 ORTHO05D000001 4.1e-09 65.1 136 32.4
TWI73G0803 Tripterygium wilfordii HOM05D007230 ORTHO05D004756 4.1e-09 65.1 132 34.8
CiPaw.16G100000 Carya illinoinensis HOM05D007908 ORTHO05D009653 5.3e-09 64.7 50 62.0
Manes.09G020501 Manihot esculenta HOM05D007908 ORTHO05D009653 6.9e-09 64.3 103 35.0
Psat0ss2585g0560 Pisum sativum HOM05D007230 ORTHO05D004756 6.9e-09 64.3 120 33.3
MELO3C030315.2 Cucumis melo HOM05D007230 ORTHO05D004756 9.1e-09 63.9 121 33.1
TPR.G24908 Trifolium pratense HOM05D000030 ORTHO05D000031 9.1e-09 63.9 121 34.7
CAN.G680.8 Capsicum annuum HOM05D007908 ORTHO05D009653 1.5e-08 63.2 120 33.3
QL09p018296 Quercus lobata HOM05D000002 ORTHO05D000001 1.5e-08 63.2 136 31.6
PSO675G6160 Papaver somniferum HOM05D000002 ORTHO05D004756 2.0e-08 62.8 118 30.5
Sabra18G0086500 Salix brachista HOM05D007230 ORTHO05D004756 2.0e-08 62.8 108 36.1
CAN.G4.42 Capsicum annuum HOM05D007908 ORTHO05D000001 2.6e-08 62.4 76 47.4
COL.COLO4_34392 Corchorus olitorius HOM05D007230 ORTHO05D004756 2.6e-08 62.4 106 37.7
Rhsim07G0087400 Rhododendron simsii HOM05D007230 ORTHO05D004756 3.4e-08 62.0 130 30.8
Solyc05g023844.1 Solanum lycopersicum HOM05D007908 ORTHO05D009653 3.4e-08 62.0 75 41.3
QL10p009369 Quercus lobata HOM05D000002 ORTHO05D000001 4.5e-08 61.6 47 61.7
Medtr4g098730 Medicago truncatula HOM05D007908 ORTHO05D009653 5.9e-08 61.2 39 76.9
PSO063G0989 Papaver somniferum HOM05D007230 ORTHO05D004756 5.9e-08 61.2 121 32.2
Rhsim11G0068500 Rhododendron simsii HOM05D007230 ORTHO05D004756 7.7e-08 60.8 130 30.8
Rhsim11G0119100 Rhododendron simsii HOM05D007230 ORTHO05D004756 1.3e-07 60.1 52 53.8
Rhsim05G0139800 Rhododendron simsii HOM05D007230 ORTHO05D004756 2.2e-07 59.3 61 47.5
CAN.G976.5 Capsicum annuum HOM05D061529 ORTHO05D031104 2.9e-07 58.9 75 38.7
MELO3C035463.2 Cucumis melo HOM05D007230 ORTHO05D004756 2.9e-07 58.9 111 35.1
CSS0046298 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004756 3.8e-07 58.5 113 31.0
CAN.G504.51 Capsicum annuum HOM05D001206 ORTHO05D002068 3.8e-07 58.5 40 62.5
Hma1.2p1_1137F.1_g260710 Hydrangea macrophylla HOM05D007908 ORTHO05D009653 3.8e-07 58.5 104 32.7
PSO339G5468 Papaver somniferum HOM05D007230 ORTHO05D004756 3.8e-07 58.5 127 29.9
SHI30744 Sapria himalayana HOM05D000002 ORTHO05D004756 3.8e-07 58.5 113 33.6
QL02p069342 Quercus lobata HOM05D000002 ORTHO05D000001 5.0e-07 58.2 109 34.9
Rhsim01G0194900 Rhododendron simsii HOM05D007230 ORTHO05D004756 5.0e-07 58.2 52 51.9
MELO3C030814.2 Cucumis melo HOM05D007230 ORTHO05D004756 8.5e-07 57.4 121 32.2
Psat1g072080 Pisum sativum HOM05D007230 ORTHO05D004756 1.1e-06 57.0 120 30.8
QL04p092122 Quercus lobata HOM05D000002 ORTHO05D000001 1.4e-06 56.6 133 30.8
CAN.G680.6 Capsicum annuum HOM05D007908 ORTHO05D009653 1.9e-06 56.2 50 52.0
CAN.G765.6 Capsicum annuum HOM05D000287 ORTHO05D009653 1.9e-06 56.2 67 43.3
Medtr1g084030 Medicago truncatula HOM05D001444 ORTHO05D003766 1.9e-06 56.2 36 75.0
QL09p045529 Quercus lobata HOM05D000002 ORTHO05D000001 1.9e-06 56.2 47 57.4
CSS0016168 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 2.5e-06 55.8 136 30.9
CSS0042753 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 2.5e-06 55.8 136 30.9
CSS0043112 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 2.5e-06 55.8 136 30.9
MELO3C032792.2 Cucumis melo HOM05D007230 ORTHO05D004756 2.5e-06 55.8 111 33.3
CSS0024569 Camellia sinensis var. sinensis HOM05D007230 ORTHO05D004756 3.2e-06 55.5 134 29.9
Rhsim06G0128500 Rhododendron simsii HOM05D007908 ORTHO05D009653 3.2e-06 55.5 56 46.4
CAN.G183.8 Capsicum annuum HOM05D007908 ORTHO05D009653 4.2e-06 55.1 50 52.0
MELO3C029711.2 Cucumis melo HOM05D007230 ORTHO05D004756 4.2e-06 55.1 121 29.8
SHI31374 Sapria himalayana HOM05D000002 ORTHO05D000001 4.2e-06 55.1 40 62.5
MELO3C033487.2 Cucumis melo HOM05D007230 ORTHO05D004756 5.5e-06 54.7 115 31.3
QL03p027161 Quercus lobata HOM05D000301 ORTHO05D000303 5.5e-06 54.7 47 55.3
Rhsim04G0054200 Rhododendron simsii HOM05D007230 ORTHO05D004756 5.5e-06 54.7 130 30.0
Sopen05g014460 Solanum pennellii HOM05D007908 ORTHO05D009653 5.5e-06 54.7 67 41.8
PGSC0003DMG400019370 Solanum tuberosum HOM05D000046 ORTHO05D000195 5.5e-06 54.7 50 54.0
Rhsim04G0107400 Rhododendron simsii HOM05D007230 ORTHO05D004756 7.2e-06 54.3 130 30.0
SHI15740 Sapria himalayana HOM05D000002 ORTHO05D000001 7.2e-06 54.3 40 62.5
TPR.G39545 Trifolium pratense HOM05D007230 ORTHO05D004756 7.2e-06 54.3 52 50.0
CSS0040737 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D000001 9.4e-06 53.9 47 53.2
Nitab4.5_0009267g0050 Nicotiana tabacum HOM05D007908 ORTHO05D009653 9.4e-06 53.9 103 32.0
SHI02490 Sapria himalayana HOM05D000002 ORTHO05D000001 9.4e-06 53.9 40 62.5
SHI03218 Sapria himalayana HOM05D007230 ORTHO05D004756 9.4e-06 53.9 40 62.5
SHI11692 Sapria himalayana HOM05D000002 ORTHO05D000001 9.4e-06 53.9 40 62.5
SHI12633 Sapria himalayana HOM05D000002 ORTHO05D004756 9.4e-06 53.9 40 62.5
SHI24644 Sapria himalayana HOM05D000002 ORTHO05D000001 9.4e-06 53.9 40 62.5
SHI45862 Sapria himalayana HOM05D007230 ORTHO05D004756 9.4e-06 53.9 40 62.5
SHI53716 Sapria himalayana HOM05D000002 ORTHO05D000001 9.4e-06 53.9 40 62.5
SHI54737 Sapria himalayana HOM05D000002 ORTHO05D000001 9.4e-06 53.9 40 62.5


User provided reference genes

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