Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9857 Trifolium pratense HOM05D006333 ORTHO05D007799 2.2e-137 492.3 249 100.0
Medtr4g023480 Medicago truncatula HOM05D006333 ORTHO05D007799 2.6e-109 399.1 286 72.7
Psat7g233400 Pisum sativum HOM05D006333 ORTHO05D007799 7.0e-107 391.0 280 73.2
Lj3g0001632 Lotus japonicus HOM05D006333 ORTHO05D007799 2.6e-93 345.9 193 88.6
Phvul.011G028900 Phaseolus vulgaris HOM05D006333 ORTHO05D007799 1.7e-92 343.2 190 88.4
Glyma.12G026000 Glycine max HOM05D006333 ORTHO05D007799 7.8e-90 334.3 193 86.0
Ca_19901_v3 Cicer arietinum L. HOM05D006333 ORTHO05D007799 1.7e-89 333.2 190 86.3
VMungo1127G0165 Vigna mungo HOM05D006333 ORTHO05D007799 1.9e-88 329.7 190 85.8
CsaV3_3G031750 Cucumis sativus L. HOM05D006333 ORTHO05D007799 1.4e-86 323.6 205 78.5
MELO3C024016.2 Cucumis melo HOM05D006333 ORTHO05D007799 3.1e-86 322.4 193 82.4
Sed0022709 Sechium edule HOM05D006333 ORTHO05D007799 5.8e-85 318.2 193 81.3
Duzib132G1109 Durio zibethinus HOM05D006333 ORTHO05D007799 1.4e-83 313.5 193 78.8
GSVIVG01012055001 Vitis vinifera HOM05D006333 ORTHO05D007799 2.4e-83 312.8 193 79.3
Aa31LG7G2140 Aethionema arabicum HOM05D006333 ORTHO05D007799 4.1e-83 312.0 193 79.8
Ciclev10032700m.g Citrus clementina HOM05D006333 ORTHO05D007799 5.4e-83 311.6 193 77.7
TWI53G1586 Tripterygium wilfordii HOM05D006333 ORTHO05D007799 5.4e-83 311.6 193 79.3
Thecc.02G159600 Theobroma cacao HOM05D006333 ORTHO05D007799 9.2e-83 310.8 193 78.8
AT1G17330 Arabidopsis thaliana HOM05D006333 ORTHO05D007799 2.1e-82 309.7 193 78.2
AL1G29580 Arabidopsis lyrata HOM05D006333 ORTHO05D007799 6.0e-82 308.1 193 78.2
Lj3A849G43 Lonicera japonica HOM05D006333 ORTHO05D007799 6.0e-82 308.1 193 77.7
COL.COLO4_08588 Corchorus olitorius HOM05D006333 ORTHO05D007799 1.3e-81 307.0 193 77.2
CARHR017920 Cardamine hirsuta HOM05D006333 ORTHO05D007799 2.3e-81 306.2 193 78.8
Thhalv10008690m.g Eutrema salsugineum HOM05D006333 ORTHO05D007799 2.3e-81 306.2 193 78.2
Gohir.A13G060400 Gossypium hirsutum HOM05D006333 ORTHO05D007799 3.0e-81 305.8 193 77.7
CiPaw.05G169800 Carya illinoinensis HOM05D006333 ORTHO05D007799 3.9e-81 305.4 193 76.2
Manes.04G057700 Manihot esculenta HOM05D006333 ORTHO05D007799 3.9e-81 305.4 193 77.7
Gohir.D13G061500 Gossypium hirsutum HOM05D006333 ORTHO05D007799 1.5e-80 303.5 193 77.2
Eucgr.J00869 Eucalyptus grandis HOM05D006333 ORTHO05D007799 1.9e-80 303.1 193 77.2
FvH4_4g36970 Fragaria vesca HOM05D006333 ORTHO05D007799 2.5e-80 302.8 194 76.3
Gorai.013G070000 Gossypium raimondii HOM05D006333 ORTHO05D007799 3.3e-80 302.4 199 75.9
FAN07G1904 Fragaria x ananassa HOM05D006333 ORTHO05D007799 9.5e-80 300.8 194 75.3
THA.LOC104808350 Tarenaya hassleriana HOM05D006333 ORTHO05D007799 2.1e-79 299.7 193 75.6
CANSAT56G2519 Cannabis sativa HOM05D006333 ORTHO05D007799 2.8e-79 299.3 193 77.7
Hund24376 Selenicereus undatus HOM05D006333 ORTHO05D007799 2.8e-79 299.3 193 76.2
Hma1.2p1_0044F.1_g026090 Hydrangea macrophylla HOM05D006333 ORTHO05D007799 3.6e-79 298.9 192 75.0
HanXRQChr12g0366301 Helianthus annuus HOM05D006333 ORTHO05D007799 4.7e-79 298.5 193 75.6
Dinv17616 Davidia involucrata HOM05D006333 ORTHO05D007799 6.2e-79 298.1 212 71.2
PGR044G2499 Punica granatum HOM05D006333 ORTHO05D007799 6.2e-79 298.1 194 75.8
Lalb_Chr01g0001411 Lupinus albus HOM05D006333 ORTHO05D007799 8.1e-79 297.7 193 76.7
Potri.007G072000 Populus trichocarpa HOM05D006333 ORTHO05D007799 1.4e-78 297.0 193 78.2
PSO782G2700 Papaver somniferum HOM05D006333 ORTHO05D007799 1.8e-78 296.6 194 75.3
CSS0049289 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 3.1e-78 295.8 193 75.1
Prupe.1G347700 Prunus persica HOM05D006333 ORTHO05D007799 5.2e-78 295.0 197 75.1
Carub.0001s1708 Capsella rubella HOM05D006333 ORTHO05D007799 6.8e-78 294.7 193 76.2
Solyc02g014720.4 Solanum lycopersicum HOM05D006333 ORTHO05D007799 6.8e-78 294.7 226 66.8
RcHm_v2.0_Chr4g0446761 Rosa chinensis HOM05D006333 ORTHO05D007799 8.9e-78 294.3 194 74.7
Sopen02g004090 Solanum pennellii HOM05D006333 ORTHO05D007799 1.2e-77 293.9 193 75.1
MD13G1004800 Malus domestica HOM05D006333 ORTHO05D007799 2.0e-77 293.1 197 74.1
Sp1g15450 Schrenkiella parvula HOM05D006333 ORTHO05D007799 2.0e-77 293.1 193 75.6
Nitab4.5_0003092g0070 Nicotiana tabacum HOM05D006333 ORTHO05D007799 5.8e-77 291.6 193 75.1
BcaC05g25649 Brassica carinata HOM05D006333 ORTHO05D007799 7.6e-77 291.2 193 75.6
C05p15710 Brassica napus HOM05D006333 ORTHO05D007799 7.6e-77 291.2 193 75.6
BolC5t30276H Brassica oleracea HOM05D006333 ORTHO05D007799 7.6e-77 291.2 193 75.6
Nitab4.5_0008825g0020 Nicotiana tabacum HOM05D006333 ORTHO05D007799 9.9e-77 290.8 193 74.6
Rhsim09G0071800 Rhododendron simsii HOM05D006333 ORTHO05D007799 9.9e-77 290.8 193 74.6
Nn5g28807 Nelumbo nucifera HOM05D006333 ORTHO05D007799 1.3e-76 290.4 193 73.6
EL10Ac9g22952 Beta vulgaris HOM05D006333 ORTHO05D007799 2.2e-76 289.7 193 72.5
CAN.G1011.5 Capsicum annuum HOM05D006333 ORTHO05D007799 2.9e-76 289.3 193 74.1
Prupe.1G347900 Prunus persica HOM05D006333 ORTHO05D007799 4.9e-76 288.5 197 72.6
MSTRG.11948 Avicennia marina HOM05D006333 ORTHO05D007799 1.9e-75 286.6 193 72.5
ECA233G4371 Erigeron canadensis HOM05D006333 ORTHO05D007799 1.9e-75 286.6 198 72.2
FAN17G3063 Fragaria x ananassa HOM05D006333 ORTHO05D007799 1.9e-75 286.6 218 67.0
A06p13260 Brassica napus HOM05D006333 ORTHO05D007799 9.2e-75 284.3 193 74.1
BraA06t24479Z Brassica rapa HOM05D006333 ORTHO05D007799 9.2e-75 284.3 193 74.1
Aqoxy3G04253 Aquilegia oxysepala HOM05D006333 ORTHO05D007799 2.1e-74 283.1 193 73.1
Atru.chr11.1164 Acer truncatum HOM05D006333 ORTHO05D007799 4.6e-74 282.0 193 71.0
Cfa008751 Carpinus fangiana HOM05D006333 ORTHO05D007799 4.6e-74 282.0 193 72.5
Lsat_1_v5_gn_8_33120 Lactuca sativa HOM05D006333 ORTHO05D007799 4.6e-74 282.0 197 73.6
BcaB07g34033 Brassica carinata HOM05D006333 ORTHO05D007799 5.1e-73 278.5 195 74.4
Sc17g0000100 Simmondsia chinensis HOM05D006333 ORTHO05D007799 6.6e-73 278.1 193 69.9
unitig_32.g11605 Utricularia gibba HOM05D006333 ORTHO05D007799 8.7e-73 277.7 193 71.0
Peaxi162Scf00334g00421 Petunia axillaris HOM05D006333 ORTHO05D007799 5.6e-72 275.0 186 75.8
arahy.Tifrunner.gnm1.ann1.A0JP3J Arachis hypogaea HOM05D006333 ORTHO05D007799 3.6e-71 272.3 197 73.6
Eucgr.J00870 Eucalyptus grandis HOM05D006333 ORTHO05D007799 6.2e-71 271.6 193 71.5
Migut.A00709 Erythranthe guttata HOM05D006333 ORTHO05D007799 8.1e-71 271.2 193 70.5
ClCG10G012010 Citrullus lanatus HOM05D006333 ORTHO05D007799 1.8e-70 270.0 176 78.4
arahy.Tifrunner.gnm1.ann1.N7V6FU Arachis hypogaea HOM05D006333 ORTHO05D007799 4.0e-70 268.9 220 66.4
FAN12G1853 Fragaria x ananassa HOM05D006333 ORTHO05D007799 5.2e-70 268.5 195 69.2
MBI06_g42293_MAGBIO Magnolia biondii HOM05D006333 ORTHO05D007799 4.4e-69 265.4 198 72.7
Atru.chr11.2675 Acer truncatum HOM05D006333 ORTHO05D007799 9.9e-69 264.2 191 68.6
PSO063G3232 Papaver somniferum HOM05D006333 ORTHO05D007799 1.3e-68 263.8 232 60.3
Sabra07G0060700 Salix brachista HOM05D006333 ORTHO05D007799 1.3e-68 263.8 230 63.5
ATR0618G379 Amborella trichopoda HOM05D006333 ORTHO05D007799 1.7e-68 263.5 194 66.5
Atru.chr11.2676 Acer truncatum HOM05D006333 ORTHO05D007799 2.9e-68 262.7 191 68.6
Os10g0486000 Oryza sativa ssp. japonica HOM05D006333 ORTHO05D007799 4.2e-67 258.8 206 64.6
CSS0015547 Camellia sinensis var. sinensis HOM05D006333 ORTHO05D007799 2.1e-66 256.5 193 66.8
Cc11_g02420 Coffea canephora HOM05D006333 ORTHO05D007799 3.9e-65 252.3 193 67.9
AUR62017701 Chenopodium quinoa HOM05D006333 ORTHO05D007799 8.1e-63 244.6 190 64.7
DCAR_008496 Daucus carota HOM05D003141 ORTHO05D003633 8.1e-63 244.6 164 73.8
Ah.01g001500 Amaranthus hybridus HOM05D006333 ORTHO05D007799 1.1e-62 244.2 164 73.2
AUR62032988 Chenopodium quinoa HOM05D006333 ORTHO05D007799 1.8e-62 243.4 193 64.2
SGA_v2.0_scaffold146G36264 Striga asiatica HOM05D006333 ORTHO05D007799 2.6e-61 239.6 229 57.6
HPP92_008575 Vanilla planifolia HOM05D006333 ORTHO05D007799 1.9e-59 233.4 195 64.1
Cpa.g.sc0.135 Carica papaya HOM05D006333 ORTHO05D007799 9.3e-59 231.1 154 72.1
Actinidia11766 Actinidia chinensis HOM05D006333 ORTHO05D007799 3.5e-58 229.2 196 62.8
TAR629G0175 Trochodendron aralioides HOM05D006333 ORTHO05D007799 9.6e-56 221.1 153 69.9
SGA_v2.0_scaffold173G39125 Striga asiatica HOM05D006333 ORTHO05D007799 2.8e-55 219.5 160 67.5
Pp3c7_23360 Physcomitrium patens HOM05D006333 ORTHO05D007799 8.4e-52 208.0 208 55.3
SMO116G0442 Selaginella moellendorffii HOM05D006333 ORTHO05D007799 1.1e-51 207.6 193 56.5
CDE02G3779 Ceratophyllum demersum HOM05D006333 ORTHO05D007799 4.6e-50 202.2 200 55.5
Zm00001eb045350 Zea mays HOM05D006333 ORTHO05D007799 1.8e-49 200.3 143 69.2
SalBow7G0482 Salvia bowleyana HOM05D006333 ORTHO05D007799 1.5e-48 197.2 242 49.6
Cre05.g234647 Chlamydomonas reinhardtii HOM05D006333 ORTHO05D007799 1.6e-47 193.7 202 55.0
vmacro16037 Vaccinium macrocarpon HOM05D006333 ORTHO05D007799 1.2e-45 187.6 313 39.0
Haze_11767 Corylus avellana HOM05D006333 ORTHO05D007799 1.4e-43 180.6 165 59.4
Actinidia13050 Actinidia chinensis HOM05D006333 ORTHO05D007799 4.2e-43 179.1 195 54.9
MCO07G572 Micromonas commoda HOM05D006333 ORTHO05D007799 3.9e-41 172.6 196 51.0
Mapoly0006s0058 Marchantia polymorpha HOM05D006333 ORTHO05D007799 7.4e-40 168.3 150 54.7
PRCOL_00000482 Prasinoderma coloniale HOM05D006333 ORTHO05D007799 1.6e-34 150.6 194 44.8
SalBow1G5083 Salvia bowleyana HOM05D006333 ORTHO05D007799 1.5e-32 144.1 112 64.3
QL03p044200 Quercus lobata HOM05D006333 ORTHO05D007799 2.2e-31 140.2 83 77.1
CBR_g5629 Chara braunii HOM05D006333 ORTHO05D007799 5.3e-30 135.6 110 58.2
Ah.05g173900 Amaranthus hybridus HOM05D006333 ORTHO05D007799 4.2e-27 125.9 84 71.4
Thecc.08G107200 Theobroma cacao HOM05D006333 ORTHO05D007799 3.8e-20 102.8 70 65.7
QL03p044193 Quercus lobata HOM05D006333 ORTHO05D007799 3.2e-19 99.8 67 71.6
Haze_06289 Corylus avellana HOM05D006333 ORTHO05D007799 3.3e-16 89.7 51 80.4
Haze_18642 Corylus avellana HOM05D006333 ORTHO05D007799 4.1e-14 82.8 78 55.1
Aa31sc968G10 Aethionema arabicum HOM05D006333 ORTHO05D007799 5.0e-12 75.9 122 41.8
Cfa024705 Carpinus fangiana HOM05D006333 ORTHO05D007799 6.5e-12 75.5 156 32.1
Cfa023716 Carpinus fangiana HOM05D006333 ORTHO05D007799 3.2e-11 73.2 99 41.4
Cpa.g.sc0.136 Carica papaya HOM05D006333 ORTHO05D007799 5.7e-08 62.4 35 88.6
Oeu044913.1 Olea europaea HOM05D006333 ORTHO05D007799 5.3e-06 55.8 35 82.9


User provided reference genes

Program Settings