Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9852 Trifolium pratense HOM05D006036 ORTHO05D007736 2.3e-107 392.5 234 100.0
Psat7g231640 Pisum sativum HOM05D006036 ORTHO05D007736 4.0e-96 355.1 231 79.2
Medtr4g023550 Medicago truncatula HOM05D006036 ORTHO05D007736 1.2e-95 353.6 234 77.8
Ca_03013_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.1e-90 337.0 229 74.2
Glyma.01G142900 Glycine max HOM05D006036 ORTHO05D007736 9.6e-90 334.0 231 73.6
Glyma.03G023900 Glycine max HOM05D006036 ORTHO05D007736 3.1e-88 328.9 231 72.3
Glyma.14G070200 Glycine max HOM05D006036 ORTHO05D007736 3.1e-88 328.9 231 72.3
Lj3g0008791 Lotus japonicus HOM05D006036 ORTHO05D007736 9.9e-87 323.9 231 71.9
Lalb_Chr07g0189801 Lupinus albus HOM05D006036 ORTHO05D007736 2.1e-84 316.2 231 69.3
Glyma.08G286100 Glycine max HOM05D006036 ORTHO05D007736 6.0e-84 314.7 175 86.3
Phvul.010G084400 Phaseolus vulgaris HOM05D006036 ORTHO05D007736 3.0e-83 312.4 176 85.2
arahy.Tifrunner.gnm1.ann1.B3VI1A Arachis hypogaea HOM05D006036 ORTHO05D007736 2.8e-81 305.8 231 72.7
Thecc.01G376100 Theobroma cacao HOM05D006036 ORTHO05D007736 4.5e-79 298.5 176 82.4
TWI14G1308 Tripterygium wilfordii HOM05D006036 ORTHO05D007736 7.6e-79 297.7 176 80.1
Cfa001720 Carpinus fangiana HOM05D006036 ORTHO05D007736 2.9e-78 295.8 175 79.4
CiPaw.01G261900 Carya illinoinensis HOM05D006036 ORTHO05D007736 2.9e-78 295.8 176 79.0
Gohir.A08G134500 Gossypium hirsutum HOM05D006036 ORTHO05D007736 8.4e-78 294.3 176 80.1
Haze_16816 Corylus avellana HOM05D006036 ORTHO05D007736 1.4e-77 293.5 176 79.0
RcHm_v2.0_Chr1g0350591 Rosa chinensis HOM05D006036 ORTHO05D007736 1.4e-77 293.5 177 78.0
Sabra02G0117300 Salix brachista HOM05D006036 ORTHO05D007736 1.4e-77 293.5 175 80.0
Duzib133G1287 Durio zibethinus HOM05D006036 ORTHO05D007736 3.2e-77 292.4 176 81.2
Nn1g01232 Nelumbo nucifera HOM05D006036 ORTHO05D007736 3.2e-77 292.4 174 78.2
Sabra02G0115600 Salix brachista HOM05D006036 ORTHO05D007736 4.2e-77 292.0 175 79.4
FAN03G0372 Fragaria x ananassa HOM05D006036 ORTHO05D007736 5.4e-77 291.6 177 78.0
QL08p052466 Quercus lobata HOM05D006036 ORTHO05D007736 9.3e-77 290.8 176 77.8
Cpa.g.sc349.4 Carica papaya HOM05D006036 ORTHO05D007736 1.2e-76 290.4 172 81.4
Potri.002G148400 Populus trichocarpa HOM05D006036 ORTHO05D007736 1.2e-76 290.4 175 77.1
Sed0014119 Sechium edule HOM05D006036 ORTHO05D007736 1.2e-76 290.4 179 76.0
Sed0006891 Sechium edule HOM05D006036 ORTHO05D007736 1.6e-76 290.0 172 80.2
Ah.16g109830 Amaranthus hybridus HOM05D006036 ORTHO05D007736 2.7e-76 289.3 176 78.4
FAN10G3538 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.5e-76 288.9 177 76.3
FAN01G0425 Fragaria x ananassa HOM05D006036 ORTHO05D007736 4.6e-76 288.5 177 76.8
Actinidia12688 Actinidia chinensis HOM05D006036 ORTHO05D007736 6.0e-76 288.1 174 77.6
CsaV3_6G006160 Cucumis sativus L. HOM05D006036 ORTHO05D007736 7.9e-76 287.7 176 76.7
Eucgr.E01417 Eucalyptus grandis HOM05D006036 ORTHO05D007736 1.0e-75 287.3 176 78.4
Rhsim01G0147400 Rhododendron simsii HOM05D006036 ORTHO05D007736 1.0e-75 287.3 176 76.7
Sc02g0002580 Simmondsia chinensis HOM05D006036 ORTHO05D007736 1.0e-75 287.3 179 74.9
Hund17020 Selenicereus undatus HOM05D006036 ORTHO05D007736 1.8e-75 286.6 176 76.1
Prupe.2G145700 Prunus persica HOM05D006036 ORTHO05D007736 3.9e-75 285.4 173 79.2
CANSAT56G2189 Cannabis sativa HOM05D006036 ORTHO05D007736 5.1e-75 285.0 173 78.6
MD02G1204100 Malus domestica HOM05D006036 ORTHO05D007736 1.1e-74 283.9 176 78.4
PGR042G0035 Punica granatum HOM05D006036 ORTHO05D007736 1.1e-74 283.9 174 77.0
FvH4_7g11910 Fragaria vesca HOM05D006036 ORTHO05D007736 1.5e-74 283.5 177 76.3
MSTRG.4890 Avicennia marina HOM05D006036 ORTHO05D007736 2.5e-74 282.7 179 73.7
EL10Ac1g00899 Beta vulgaris HOM05D006036 ORTHO05D007736 3.3e-74 282.3 177 75.7
Manes.05G045200 Manihot esculenta HOM05D006036 ORTHO05D007736 5.6e-74 281.6 174 78.2
GSVIVG01027612001 Vitis vinifera HOM05D006036 ORTHO05D007736 5.6e-74 281.6 178 74.2
Aqoxy7G00627 Aquilegia oxysepala HOM05D006036 ORTHO05D007736 7.4e-74 281.2 177 76.3
Medtr7g074920 Medicago truncatula HOM05D006036 ORTHO05D007736 1.3e-73 280.4 176 76.1
Sopen01g037100 Solanum pennellii HOM05D006036 ORTHO05D007736 1.3e-73 280.4 174 73.6
Oeu037915.1 Olea europaea HOM05D006036 ORTHO05D007736 1.6e-73 280.0 179 73.2
Solyc01g091360.4 Solanum lycopersicum HOM05D006036 ORTHO05D007736 2.8e-73 279.3 174 73.6
AUR62013628 Chenopodium quinoa HOM05D006036 ORTHO05D007736 4.8e-73 278.5 176 74.4
Cc02_g36690 Coffea canephora HOM05D006036 ORTHO05D007736 1.1e-72 277.3 175 74.3
PGSC0003DMG400012774 Solanum tuberosum HOM05D006036 ORTHO05D007736 2.4e-72 276.2 176 71.0
CDE02G2016 Ceratophyllum demersum HOM05D006036 ORTHO05D007736 9.0e-72 274.2 173 76.3
CSS0011162 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 3.4e-71 272.3 163 77.9
CSS0022013 Camellia sinensis var. sinensis HOM05D006036 ORTHO05D007736 3.4e-71 272.3 163 77.9
DCAR_031531 Daucus carota HOM05D006036 ORTHO05D007736 5.8e-71 271.6 164 77.4
MBI04_g35276_MAGBIO Magnolia biondii HOM05D006036 ORTHO05D007736 7.6e-71 271.2 184 71.2
Carub.0005s2756 Capsella rubella HOM05D006036 ORTHO05D007736 1.3e-70 270.4 173 76.3
BolC8t51167H Brassica oleracea HOM05D006036 ORTHO05D007736 1.7e-70 270.0 173 77.5
Dinv32378 Davidia involucrata HOM05D006036 ORTHO05D007736 2.2e-70 269.6 163 79.1
THA.LOC104802443 Tarenaya hassleriana HOM05D006036 ORTHO05D007736 2.2e-70 269.6 172 77.9
Atru.chr5.310 Acer truncatum HOM05D006036 ORTHO05D007736 2.9e-70 269.2 160 80.0
A09p53070 Brassica napus HOM05D006036 ORTHO05D007736 2.9e-70 269.2 173 77.5
SalBow5G0783 Salvia bowleyana HOM05D006036 ORTHO05D007736 2.9e-70 269.2 174 73.0
SalBow5G3583 Salvia bowleyana HOM05D006036 ORTHO05D007736 2.9e-70 269.2 174 73.0
HanXRQChr16g0520241 Helianthus annuus HOM05D006036 ORTHO05D007736 3.8e-70 268.9 177 70.1
unitig_8.g4983 Utricularia gibba HOM05D006036 ORTHO05D007736 3.8e-70 268.9 172 72.7
BcaC07g40602 Brassica carinata HOM05D006036 ORTHO05D007736 4.9e-70 268.5 173 76.9
C08p35770 Brassica napus HOM05D006036 ORTHO05D007736 4.9e-70 268.5 173 76.9
arahy.Tifrunner.gnm1.ann1.Y8TVDJ Arachis hypogaea HOM05D006036 ORTHO05D007736 8.4e-70 267.7 153 82.4
Sp5g02440 Schrenkiella parvula HOM05D006036 ORTHO05D007736 8.4e-70 267.7 173 76.3
BcaC07g42642 Brassica carinata HOM05D006036 ORTHO05D007736 1.4e-69 266.9 173 76.3
AT3G60810 Arabidopsis thaliana HOM05D006036 ORTHO05D007736 4.2e-69 265.4 173 75.1
AL5G43130 Arabidopsis lyrata HOM05D006036 ORTHO05D007736 7.1e-69 264.6 173 74.6
CARHR171200 Cardamine hirsuta HOM05D006036 ORTHO05D007736 2.7e-68 262.7 173 74.0
ECA234G4399 Erigeron canadensis HOM05D006036 ORTHO05D007736 3.5e-68 262.3 175 69.7
Lsat_1_v5_gn_4_40940 Lactuca sativa HOM05D006036 ORTHO05D007736 3.5e-68 262.3 173 70.5
Aa31LG10G15050 Aethionema arabicum HOM05D006036 ORTHO05D007736 1.0e-67 260.8 173 73.4
Lj9A569G50 Lonicera japonica HOM05D006036 ORTHO05D007736 1.3e-67 260.4 163 74.8
BraA09t40733Z Brassica rapa HOM05D006036 ORTHO05D007736 1.8e-67 260.0 165 78.2
VMungo0251G0926 Vigna mungo HOM05D006036 ORTHO05D007736 5.1e-67 258.5 176 73.9
Thhalv10006234m.g Eutrema salsugineum HOM05D006036 ORTHO05D007736 1.1e-66 257.3 173 73.4
vmacro21009 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 7.4e-66 254.6 158 74.1
SEGI_01363 Sequoiadendron giganteum HOM05D006036 ORTHO05D007736 9.6e-66 254.2 174 65.5
Zm00001eb210410 Zea mays HOM05D006036 ORTHO05D007736 3.7e-65 252.3 176 65.3
ATR0810G113 Amborella trichopoda HOM05D006036 ORTHO05D007736 6.2e-65 251.5 160 74.4
Ciclev10022362m.g Citrus clementina HOM05D006036 ORTHO05D007736 6.2e-65 251.5 151 78.1
FAN10G0738 Fragaria x ananassa HOM05D006036 ORTHO05D007736 2.4e-64 249.6 149 77.9
AUR62004220 Chenopodium quinoa HOM05D006036 ORTHO05D007736 4.0e-64 248.8 155 76.1
Nitab4.5_0005372g0020 Nicotiana tabacum HOM05D006036 ORTHO05D007736 6.9e-64 248.1 151 75.5
VMungo0331G0186 Vigna mungo HOM05D006036 ORTHO05D007736 5.8e-63 245.0 204 65.2
Os03g0858700 Oryza sativa ssp. japonica HOM05D006036 ORTHO05D007736 7.6e-63 244.6 176 65.3
vmacro21008 Vaccinium macrocarpon HOM05D006036 ORTHO05D007736 1.0e-62 244.2 150 75.3
Mapoly0007s0216 Marchantia polymorpha HOM05D006036 ORTHO05D007736 3.2e-61 239.2 172 62.8
AagrBONN_evm.TU.Sc2ySwM_117.1558 Anthoceros agrestis HOM05D006036 ORTHO05D007736 4.6e-60 235.3 169 64.5
Pp3c23_9860 Physcomitrium patens HOM05D006036 ORTHO05D007736 1.5e-58 230.3 174 62.6
Hma1.2p1_1122F.1_g259290 Hydrangea macrophylla HOM05D006036 ORTHO05D007736 2.4e-56 223.0 172 66.3
Gohir.D08G155400 Gossypium hirsutum HOM05D006036 ORTHO05D007736 2.6e-55 219.5 137 76.6
PSO782G0421 Papaver somniferum HOM05D006036 ORTHO05D007736 1.7e-54 216.9 177 62.7
SMO143G0045 Selaginella moellendorffii HOM05D006036 ORTHO05D007736 1.7e-54 216.9 151 65.6
PSO478G2400 Papaver somniferum HOM05D006036 ORTHO05D007736 1.4e-53 213.8 177 62.1
COL.COLO4_12549 Corchorus olitorius HOM05D006036 ORTHO05D007736 7.7e-47 191.4 120 76.7
Cre11.g468750 Chlamydomonas reinhardtii HOM05D006036 ORTHO05D007736 1.3e-46 190.7 178 50.0
SGA_v2.0_scaffold153G37014 Striga asiatica HOM05D006036 ORTHO05D001464 2.9e-46 189.5 168 57.7
ClCG06G000370 Citrullus lanatus HOM05D006036 ORTHO05D007736 6.5e-46 188.3 176 57.4
Nitab4.5_0000457g0290 Nicotiana tabacum HOM05D006036 ORTHO05D007736 6.5e-46 188.3 162 58.6
Glyma.09G269100 Glycine max HOM05D006036 ORTHO05D007736 2.1e-44 183.3 117 76.9
Peaxi162Scf00021g01720 Petunia axillaris HOM05D006036 ORTHO05D007736 9.7e-42 174.5 108 74.1
MELO3C035247.2 Cucumis melo HOM05D006036 ORTHO05D007736 2.8e-41 172.9 111 75.7
CAN.G388.12 Capsicum annuum HOM05D006036 ORTHO05D007736 1.5e-39 167.2 108 70.4
Lalb_Chr03g0039561 Lupinus albus HOM05D006036 ORTHO05D007736 1.5e-39 167.2 124 66.9
Ca_19909_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 1.3e-38 164.1 91 82.4
FAN06G1700 Fragaria x ananassa HOM05D006036 ORTHO05D007736 1.6e-36 157.1 93 79.6
Ca_07819_v3 Cicer arietinum L. HOM05D006036 ORTHO05D007736 7.0e-32 141.7 93 74.2
Migut.N01635 Erythranthe guttata HOM05D006036 ORTHO05D007736 5.9e-31 138.7 91 70.3
FAN06G2896 Fragaria x ananassa HOM05D006036 ORTHO05D007736 3.8e-30 136.0 76 81.6
MCO13G087 Micromonas commoda HOM05D006036 ORTHO05D007736 2.5e-29 133.3 159 44.7
CBR_g54966 Chara braunii HOM05D006036 ORTHO05D007736 3.0e-27 126.3 83 69.9
MELO3C034959.2 Cucumis melo HOM05D006036 ORTHO05D007736 2.6e-26 123.2 65 83.1
Ciclev10033315m.g Citrus clementina HOM05D006036 ORTHO05D007736 1.1e-24 117.9 140 50.0
Gorai.007G091200 Gossypium raimondii HOM05D001611 ORTHO05D001464 7.7e-23 111.7 90 63.3
Gohir.D11G085366 Gossypium hirsutum HOM05D001611 ORTHO05D001464 1.1e-21 107.8 90 61.1
Lalb_Chr03g0039551 Lupinus albus HOM05D006036 ORTHO05D007736 1.1e-21 107.8 80 65.0
Psat3g116040 Pisum sativum HOM05D006036 ORTHO05D007736 4.2e-21 105.9 67 73.1
Lj1g0011795 Lotus japonicus HOM05D006036 ORTHO05D007736 1.5e-18 97.4 54 81.5
arahy.Tifrunner.gnm1.ann1.WD24C8 Arachis hypogaea HOM05D006036 ORTHO05D007736 1.1e-16 91.3 62 69.4
arahy.Tifrunner.gnm1.ann1.BW32E7 Arachis hypogaea HOM05D006036 ORTHO05D000587 1.5e-13 80.9 59 64.4
Gorai.004G161600 Gossypium raimondii HOM05D006036 ORTHO05D007736 2.8e-12 76.6 70 58.6


User provided reference genes

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