Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 3.0e-130 469.2 366 100.0
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 2.1e-123 446.4 312 85.3
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 4.8e-112 408.7 325 76.0
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 8.1e-112 407.9 318 78.0
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 1.1e-111 407.5 325 75.1
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 2.4e-111 406.4 324 75.0
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 1.2e-110 404.1 320 76.2
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 6.5e-109 398.3 316 81.3
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 2.7e-107 392.9 342 76.0
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 2.7e-107 392.9 342 76.0
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 3.0e-98 362.8 316 70.6
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 2.5e-97 359.8 323 73.4
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 1.6e-96 357.1 325 76.9
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 1.6e-96 357.1 329 72.9
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 2.4e-95 353.2 320 71.6
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 2.4e-95 353.2 327 76.1
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.3e-95 352.1 334 71.6
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.2e-94 350.9 337 70.9
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 2.0e-94 350.1 327 72.2
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.4e-94 349.4 333 70.9
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 5.9e-94 348.6 333 74.5
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 5.9e-94 348.6 348 68.7
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 5.9e-94 348.6 331 71.6
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 1.7e-93 347.1 336 72.0
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 1.7e-93 347.1 318 67.9
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 1.1e-92 344.4 254 72.8
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 7.2e-92 341.7 320 68.1
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 7.2e-92 341.7 327 67.6
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.6e-91 340.5 331 70.1
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.6e-91 340.5 317 68.1
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 3.6e-91 339.3 325 69.2
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 7.9e-91 338.2 328 66.8
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.8e-90 337.0 324 67.0
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 1.8e-90 337.0 314 62.1
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 3.0e-90 336.3 332 65.4
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 3.9e-90 335.9 328 68.6
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 6.7e-90 335.1 325 65.8
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 2.6e-89 333.2 324 66.4
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 2.6e-89 333.2 326 62.3
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 5.7e-89 332.0 326 66.0
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.7e-89 332.0 323 71.2
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 7.4e-89 331.6 329 66.6
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 7.4e-89 331.6 329 66.6
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 7.4e-89 331.6 334 68.9
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 1.3e-88 330.9 324 66.0
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 1.7e-88 330.5 247 73.3
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 2.2e-88 330.1 330 65.5
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 2.2e-88 330.1 322 69.9
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 2.2e-88 330.1 336 66.1
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 1.8e-87 327.0 325 74.5
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 1.8e-87 327.0 251 71.7
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 2.4e-87 326.6 322 62.4
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 4.1e-87 325.9 325 69.2
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 9.1e-87 324.7 326 64.4
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.2e-86 324.3 326 69.6
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 5.9e-86 322.0 323 69.7
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.0e-85 321.2 257 70.0
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 1.7e-85 320.5 329 67.5
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 1.1e-84 317.8 326 64.4
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.4e-84 317.4 351 65.2
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 2.1e-83 313.5 324 67.9
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 3.6e-83 312.8 325 58.2
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 6.1e-83 312.0 217 77.9
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 2.3e-82 310.1 316 57.3
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 1.1e-81 307.8 323 56.7
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 1.1e-81 307.8 323 66.9
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 2.6e-81 306.6 326 66.6
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 4.4e-81 305.8 314 58.9
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 4.4e-81 305.8 329 55.6
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 1.3e-80 304.3 251 66.1
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 3.7e-80 302.8 327 58.1
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 3.7e-80 302.8 327 58.1
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 6.3e-80 302.0 328 63.4
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 8.2e-80 301.6 326 63.5
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 1.1e-79 301.2 328 63.4
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.1e-79 301.2 244 68.4
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.4e-79 300.1 248 65.3
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 2.4e-79 300.1 250 67.2
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 5.3e-79 298.9 326 59.2
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 5.3e-79 298.9 318 56.3
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 7.0e-79 298.5 330 56.7
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 9.1e-79 298.1 250 64.4
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 9.1e-79 298.1 329 66.0
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 4.5e-78 295.8 316 56.0
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 1.7e-77 293.9 322 59.0
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 2.2e-77 293.5 330 57.6
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 9.4e-76 288.1 342 56.4
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 1.6e-75 287.3 289 59.2
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 8.0e-75 285.0 251 70.1
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 6.7e-74 282.0 334 60.8
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 2.8e-72 276.6 318 55.3
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 7.0e-71 271.9 243 62.6
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 9.1e-71 271.6 217 69.6
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 4.5e-70 269.2 402 53.0
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 5.9e-70 268.9 340 63.8
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 5.9e-70 268.9 207 74.4
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 1.0e-69 268.1 218 68.3
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 2.2e-69 266.9 216 69.4
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 3.2e-68 263.1 245 68.2
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 2.7e-67 260.0 345 58.6
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 2.7e-67 260.0 258 60.9
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 4.4e-65 252.7 232 64.7
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 2.2e-64 250.4 323 52.3
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.4e-63 246.9 243 58.4
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 1.2e-62 244.6 253 56.1
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 1.2e-62 244.6 253 56.1
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 1.6e-62 244.2 340 51.5
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 2.0e-62 243.8 246 59.3
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 2.0e-62 243.8 247 57.9
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 1.0e-61 241.5 258 54.7
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.0e-61 239.2 313 49.8
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 1.5e-60 237.7 229 62.0
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 3.2e-60 236.5 326 53.4
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 1.2e-59 234.6 256 54.7
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 1.2e-59 234.6 256 54.7
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 2.8e-59 233.4 256 54.7
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 8.0e-59 231.9 328 53.4
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 1.4e-58 231.1 336 52.7
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 8.8e-58 228.4 332 57.2
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 1.2e-57 228.0 336 60.1
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 1.2e-57 228.0 220 64.5
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 4.1e-55 219.5 191 65.4
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 5.4e-55 219.2 315 45.4
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 1.3e-53 214.5 252 53.2
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 3.2e-47 193.4 141 75.9
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 1.0e-45 188.3 185 74.1
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 1.6e-43 181.0 266 45.9
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.3e-32 144.8 80 90.0
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.3e-32 144.8 122 67.2
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 2.9e-32 143.7 222 44.6
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 1.5e-25 121.3 151 41.7
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 6.4e-24 115.9 121 48.8
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 6.4e-24 115.9 118 46.6
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 2.4e-23 114.0 101 66.3
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 4.6e-22 109.8 81 69.1
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 3.0e-21 107.1 113 77.0
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 3.3e-20 103.6 116 78.4
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 2.8e-19 100.5 105 45.7
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 2.4e-18 97.4 110 43.6
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 2.4e-18 97.4 113 79.6
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.2e-18 96.3 104 45.2
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 1.5e-17 94.7 124 75.8
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 2.6e-17 94.0 109 42.2
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 1.7e-16 91.3 141 62.4
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.0e-13 82.0 53 66.0
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.6e-11 74.7 99 53.5
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 1.3e-08 65.1 105 44.8
ECA075G0001 Erigeron canadensis HOM05D004645 ORTHO05D005693 2.2e-08 64.3 35 82.9
Os12g0465800 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D049646 5.4e-07 59.7 110 65.5
Zm00001eb132960 Zea mays HOM05D004645 ORTHO05D049646 2.7e-06 57.4 109 66.1


User provided reference genes

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