Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 3.7e-280 967.6 513 100.0
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 7.2e-183 644.4 437 80.3
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 2.1e-174 616.3 426 77.0
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 4.3e-167 592.0 372 80.9
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 2.3e-165 586.3 411 74.2
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 9.8e-164 580.9 401 75.6
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 1.4e-162 577.0 403 75.2
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 9.2e-162 574.3 410 74.4
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 1.8e-157 560.1 423 69.3
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 2.9e-147 526.2 362 72.9
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 7.1e-146 521.5 329 79.9
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 2.7e-145 519.6 416 64.9
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 1.7e-144 516.9 372 70.7
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 9.6e-143 511.1 364 69.8
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 3.6e-142 509.2 386 66.3
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 4.8e-142 508.8 365 69.3
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 4.8e-142 508.8 374 69.3
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 4.8e-142 508.8 393 66.4
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 6.2e-142 508.4 364 69.2
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 1.1e-141 507.7 408 63.7
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.4e-141 507.3 373 68.4
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 1.8e-141 506.9 377 68.4
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.9e-141 505.0 364 68.4
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 9.0e-141 504.6 364 69.0
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 2.0e-140 503.4 370 68.1
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 4.4e-140 502.3 269 92.6
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 7.6e-140 501.5 388 64.9
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 7.6e-140 501.5 370 66.2
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 9.9e-140 501.1 345 70.7
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 6.4e-139 498.4 383 64.5
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 2.4e-138 496.5 391 65.0
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 7.1e-138 495.0 345 70.1
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 7.1e-138 495.0 358 71.5
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.6e-137 493.8 412 63.3
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 2.1e-137 493.4 358 71.2
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 2.1e-137 493.4 358 71.2
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.7e-137 493.0 359 68.8
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 6.0e-137 491.9 362 67.7
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 7.9e-137 491.5 339 72.3
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 3.0e-136 489.6 362 68.5
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 3.9e-136 489.2 405 63.0
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 3.9e-136 489.2 364 65.1
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 8.7e-136 488.0 364 65.4
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 8.7e-136 488.0 365 66.3
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 8.7e-136 488.0 367 66.2
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 1.3e-134 484.2 364 65.1
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 1.6e-134 483.8 358 67.6
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 1.6e-134 483.8 375 64.8
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.6e-134 483.8 350 68.0
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 1.6e-134 483.8 429 58.7
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 1.6e-134 483.8 362 66.9
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 3.6e-134 482.6 372 65.9
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 6.2e-134 481.9 363 66.7
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 6.2e-134 481.9 372 65.6
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 6.2e-134 481.9 363 66.4
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 6.2e-134 481.9 363 66.7
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 8.1e-134 481.5 358 65.9
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 1.1e-133 481.1 365 65.8
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 1.8e-133 480.3 370 65.1
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 2.4e-133 479.9 364 64.6
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 3.1e-133 479.6 376 64.4
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 3.1e-133 479.6 364 64.8
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 3.1e-133 479.6 364 64.8
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 1.2e-132 477.6 388 62.9
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.5e-132 477.2 344 67.7
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 1.5e-132 477.2 360 65.0
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 2.6e-132 476.5 351 67.2
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 3.4e-132 476.1 369 65.6
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 4.5e-132 475.7 340 68.2
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 5.8e-132 475.3 363 64.2
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 9.9e-132 474.6 355 65.6
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 1.3e-131 474.2 395 62.5
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.7e-131 473.8 346 67.3
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.7e-131 473.8 367 64.0
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.2e-131 473.4 353 65.4
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 3.8e-131 472.6 342 67.8
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 6.4e-131 471.9 342 67.8
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 6.4e-131 471.9 342 67.8
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 2.4e-130 469.9 379 63.6
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 1.6e-129 467.2 371 65.5
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 3.5e-129 466.1 375 62.9
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 1.0e-128 464.5 405 62.0
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 2.3e-128 463.4 378 61.9
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 3.0e-128 463.0 341 65.7
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 6.7e-128 461.8 434 56.7
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 6.7e-128 461.8 357 63.6
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 3.3e-127 459.5 377 62.3
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 6.2e-126 455.3 355 62.5
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 6.2e-126 455.3 332 69.0
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 6.9e-125 451.8 437 55.4
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.5e-124 450.7 426 57.5
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 2.6e-124 449.9 353 62.6
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 4.9e-123 445.7 354 61.0
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 9.3e-122 441.4 355 62.0
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 1.0e-120 438.0 320 67.8
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.9e-119 433.7 270 77.0
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 2.8e-118 429.9 380 59.2
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 6.3e-118 428.7 499 49.1
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 3.8e-115 419.5 348 63.2
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 1.6e-113 414.1 333 64.9
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 6.1e-113 412.1 316 65.5
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 3.3e-111 406.4 332 59.3
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 4.3e-111 406.0 365 55.3
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 2.2e-110 403.7 356 58.1
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 9.0e-109 398.3 542 44.6
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 4.5e-108 396.0 299 65.6
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 5.9e-108 395.6 264 70.8
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 1.0e-107 394.8 289 69.6
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 1.7e-107 394.0 316 66.8
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.7e-107 394.0 350 57.7
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 1.8e-104 384.0 317 64.4
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 7.0e-93 345.5 354 54.0
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.5e-92 342.8 347 48.7
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 4.2e-90 336.3 258 66.3
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.2e-89 334.7 317 52.1
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 1.6e-89 334.3 342 48.5
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.6e-89 333.2 339 50.4
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 3.3e-87 326.6 231 70.1
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 9.7e-87 325.1 346 48.0
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 3.1e-85 320.1 220 66.8
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 1.2e-76 291.6 242 60.7
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 5.5e-74 282.7 173 78.0
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.2e-71 275.0 289 49.8
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 6.3e-70 269.2 234 60.7
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 5.4e-69 266.2 203 67.5
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 2.8e-65 253.8 208 63.5
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 8.0e-65 252.3 234 59.8
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.5e-63 248.1 245 52.2
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.4e-56 224.9 227 55.9
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 1.1e-45 188.7 117 69.2
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 1.2e-41 175.3 90 90.0
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.1e-41 174.5 161 58.4
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 8.4e-38 162.5 150 52.0
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 7.1e-37 159.5 326 34.4
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 1.8e-32 144.8 298 31.2
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.6e-31 141.0 84 78.6
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 7.8e-28 129.4 323 31.0
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 2.6e-23 114.4 98 51.0
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 2.5e-18 97.8 78 69.2
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 1.7e-14 85.1 184 30.4
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 3.8e-14 84.0 49 75.5
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 7.9e-12 76.3 122 37.7
TPR.G31324 Trifolium pratense HOM05D000410 ORTHO05D003193 2.3e-11 74.7 73 63.0
TPR.G877 Trifolium pratense HOM05D000410 ORTHO05D003193 1.4e-08 65.5 47 72.3
Medtr4g073070 Medicago truncatula HOM05D000410 ORTHO05D003193 3.8e-06 57.4 47 66.0


User provided reference genes

Program Settings