Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 5.2e-60 234.2 118 100.0
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 5.8e-43 177.6 105 85.7
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 2.5e-30 135.6 112 69.6
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 5.6e-30 134.4 113 69.0
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 8.9e-28 127.1 115 67.0
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 3.4e-27 125.2 111 64.0
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 3.2e-25 118.6 110 63.6
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 6.0e-24 114.4 124 58.9
Lj5g0018872 Lotus japonicus HOM05D005816 ORTHO05D006915 1.5e-22 109.8 100 67.0
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.1e-21 105.9 115 59.1
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 2.4e-20 102.4 117 50.4
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 1.5e-19 99.8 151 51.0
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 2.0e-19 99.4 115 49.6
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.9e-18 95.5 128 49.2
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 8.4e-18 94.0 119 48.7
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 8.4e-18 94.0 119 51.3
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 1.1e-17 93.6 116 51.7
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 1.4e-17 93.2 126 54.0
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 1.9e-17 92.8 106 57.5
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 2.4e-17 92.4 101 53.5
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 3.2e-17 92.0 116 46.6
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 5.4e-17 91.3 114 52.6
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 5.4e-17 91.3 107 52.3
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 9.3e-17 90.5 115 49.6
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 1.2e-16 90.1 114 48.2
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 2.1e-16 89.4 117 48.7
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 3.5e-16 88.6 116 46.6
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 3.5e-16 88.6 116 46.6
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 6.0e-16 87.8 116 55.2
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 7.9e-16 87.4 103 50.5
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 7.9e-16 87.4 114 51.8
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 7.9e-16 87.4 110 50.9
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.0e-15 87.0 105 54.3
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 2.3e-15 85.9 108 49.1
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 3.0e-15 85.5 117 44.4
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 5.1e-15 84.7 108 50.0
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 6.7e-15 84.3 111 49.5
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 6.7e-15 84.3 115 48.7
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 1.1e-14 83.6 104 49.0
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 1.5e-14 83.2 119 47.9
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 1.5e-14 83.2 110 50.9
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 2.5e-14 82.4 109 47.7
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 2.5e-14 82.4 115 46.1
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 2.5e-14 82.4 109 49.5
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 4.3e-14 81.6 117 45.3
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 7.4e-14 80.9 121 44.6
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.3e-13 80.1 117 47.0
Aa31sc79G90 Aethionema arabicum HOM05D005816 ORTHO05D006915 1.6e-13 79.7 101 50.5
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.6e-13 79.7 110 45.5
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 2.1e-13 79.3 108 43.5
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 2.8e-13 79.0 101 51.5
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 3.7e-13 78.6 118 48.3
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 4.8e-13 78.2 114 43.9
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.1e-12 77.0 121 44.6
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.1e-12 77.0 121 44.6
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.4e-12 76.6 116 48.3
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.4e-12 76.6 116 48.3
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 1.8e-12 76.3 135 44.4
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 3.1e-12 75.5 93 57.0
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 5.3e-12 74.7 110 46.4
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 1.2e-11 73.6 61 62.3
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 1.5e-11 73.2 117 41.9
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 2.0e-11 72.8 113 42.5
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 2.6e-11 72.4 63 58.7
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 2.6e-11 72.4 114 41.2
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.6e-11 72.4 114 41.2
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 2.6e-11 72.4 119 39.5
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 3.4e-11 72.0 114 40.4
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 4.5e-11 71.6 112 42.9
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 4.5e-11 71.6 117 40.2
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 5.8e-11 71.2 93 55.9
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 5.8e-11 71.2 118 44.1
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 7.6e-11 70.9 114 40.4
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 7.6e-11 70.9 114 43.0
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 1.3e-10 70.1 114 43.9
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 1.3e-10 70.1 116 43.1
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 2.2e-10 69.3 112 43.8
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 2.2e-10 69.3 111 45.9
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 4.9e-10 68.2 117 39.3
Sp5g23900 Schrenkiella parvula HOM05D005816 ORTHO05D006915 4.9e-10 68.2 116 42.2
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 6.4e-10 67.8 105 46.7
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 6.4e-10 67.8 130 43.1
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 8.4e-10 67.4 118 43.2
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 8.4e-10 67.4 117 47.0
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 1.4e-09 66.6 93 45.2
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 1.9e-09 66.2 104 41.3
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 2.4e-09 65.9 119 37.0
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 4.2e-09 65.1 109 42.2
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 4.2e-09 65.1 115 40.9
Aqoxy3G03898 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 5.5e-09 64.7 112 42.9
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 5.5e-09 64.7 118 40.7
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 7.1e-09 64.3 117 42.7
THA.LOC104821965 Tarenaya hassleriana HOM05D005816 ORTHO05D006915 7.1e-09 64.3 116 39.7
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 9.3e-09 63.9 119 43.7
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 9.3e-09 63.9 110 43.6
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.2e-08 63.5 74 50.0
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 1.2e-08 63.5 113 38.1
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 1.2e-08 63.5 93 41.9
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 1.6e-08 63.2 105 44.8
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 2.1e-08 62.8 57 54.4
Psat4g043720 Pisum sativum HOM05D005816 ORTHO05D006915 2.1e-08 62.8 107 37.4
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 6.0e-08 61.2 113 34.5
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 7.9e-08 60.8 125 35.2
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 7.9e-08 60.8 117 41.9
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.0e-07 60.5 111 36.9
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 1.3e-07 60.1 109 36.7
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 2.3e-07 59.3 106 39.6
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 2.3e-07 59.3 63 49.2
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 3.0e-07 58.9 102 36.3
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 5.1e-07 58.2 102 39.2
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 5.1e-07 58.2 102 39.2
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 6.7e-07 57.8 121 37.2
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 8.7e-07 57.4 72 51.4
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 1.1e-06 57.0 132 33.3
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.5e-06 56.6 104 42.3
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 1.9e-06 56.2 104 42.3
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 1.9e-06 56.2 84 45.2
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 2.5e-06 55.8 50 56.0
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 2.5e-06 55.8 79 41.8
HanXRQChr16g0502081 Helianthus annuus HOM05D005816 ORTHO05D006915 3.3e-06 55.5 47 61.7
CANSAT64G1761 Cannabis sativa HOM05D005816 ORTHO05D006915 4.3e-06 55.1 25 96.0
Sed0012991 Sechium edule HOM05D005816 ORTHO05D006915 9.6e-06 53.9 116 35.3
SGA_v2.0_scaffold59G20629 Striga asiatica HOM05D005816 ORTHO05D006915 9.6e-06 53.9 61 49.2


User provided reference genes

Program Settings