Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9764 Trifolium pratense HOM05D007146 ORTHO05D008971 0.0e+00 1122.8 566 100.0
Medtr2g064450 Medicago truncatula HOM05D007146 ORTHO05D008971 3.9e-286 987.6 566 88.5
Glyma.08G173200 Glycine max HOM05D007146 ORTHO05D008971 4.0e-259 897.9 564 80.7
Phvul.005G055600 Phaseolus vulgaris HOM05D007146 ORTHO05D008971 1.1e-248 863.2 561 77.7
Lj3g0000430 Lotus japonicus HOM05D007146 ORTHO05D008971 2.8e-244 848.6 559 78.2
Lalb_Chr25g0285151 Lupinus albus HOM05D007146 ORTHO05D008971 3.5e-239 831.6 563 75.5
arahy.Tifrunner.gnm1.ann1.L14HV7 Arachis hypogaea HOM05D007146 ORTHO05D008971 5.5e-216 754.6 613 65.3
arahy.Tifrunner.gnm1.ann1.5W7G8A Arachis hypogaea HOM05D007146 ORTHO05D008971 1.0e-214 750.4 613 65.3
VMungo1080G0158 Vigna mungo HOM05D007146 ORTHO05D008971 1.8e-214 749.6 495 76.8
Psat1g002520 Pisum sativum HOM05D007146 ORTHO05D008971 3.2e-208 728.8 429 85.8
CiPaw.11G069000 Carya illinoinensis HOM05D007146 ORTHO05D008971 8.5e-193 677.6 561 62.7
MD05G1215600 Malus domestica HOM05D007146 ORTHO05D008971 8.5e-185 651.0 567 59.6
Atru.chr2.1879 Acer truncatum HOM05D007146 ORTHO05D008971 1.1e-184 650.6 566 59.9
FvH4_3g16020 Fragaria vesca HOM05D007146 ORTHO05D008971 8.0e-183 644.4 559 59.6
Potri.007G065300 Populus trichocarpa HOM05D007146 ORTHO05D008971 1.8e-182 643.3 562 60.5
RcHm_v2.0_Chr5g0027001 Rosa chinensis HOM05D007146 ORTHO05D008971 2.3e-182 642.9 560 60.0
FAN11G2635 Fragaria x ananassa HOM05D007146 ORTHO05D008971 3.0e-182 642.5 559 59.6
Gorai.004G269700 Gossypium raimondii HOM05D007146 ORTHO05D008971 4.0e-182 642.1 572 59.4
Prupe.4G143400 Prunus persica HOM05D007146 ORTHO05D008971 2.2e-180 636.3 560 58.6
TWI38G0129 Tripterygium wilfordii HOM05D007146 ORTHO05D008971 2.2e-180 636.3 581 57.1
COL.COLO4_05069 Corchorus olitorius HOM05D007146 ORTHO05D008971 4.9e-180 635.2 568 59.0
GSVIVG01020477001 Vitis vinifera HOM05D007146 ORTHO05D008971 1.0e-177 627.5 557 59.4
Sabra07G0052900 Salix brachista HOM05D007146 ORTHO05D008971 1.3e-177 627.1 560 59.5
THA.LOC104812351 Tarenaya hassleriana HOM05D007146 ORTHO05D008971 4.0e-174 615.5 555 58.6
FAN25G2803 Fragaria x ananassa HOM05D007146 ORTHO05D008971 2.6e-173 612.8 538 58.2
Eucgr.F01450 Eucalyptus grandis HOM05D007146 ORTHO05D008971 5.7e-173 611.7 563 57.2
Sed0009835 Sechium edule HOM05D007146 ORTHO05D008971 7.5e-173 611.3 556 57.7
ClCG11G016310 Citrullus lanatus HOM05D007146 ORTHO05D008971 6.4e-172 608.2 570 56.0
DCAR_009636 Daucus carota HOM05D007146 ORTHO05D008971 2.4e-171 606.3 571 55.9
CSS0033590 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 4.1e-171 605.5 598 54.0
Nn7g37748 Nelumbo nucifera HOM05D007146 ORTHO05D008971 1.0e-169 600.9 580 55.2
PGR083G2275 Punica granatum HOM05D007146 ORTHO05D008971 2.5e-168 596.3 552 57.4
Rhsim06G0237700 Rhododendron simsii HOM05D007146 ORTHO05D008971 3.3e-168 595.9 613 53.8
CsaV3_2G022170 Cucumis sativus L. HOM05D007146 ORTHO05D008971 4.3e-168 595.5 552 55.8
CSS0042492 Camellia sinensis var. sinensis HOM05D007146 ORTHO05D008971 9.5e-168 594.3 571 54.3
AT1G16650 Arabidopsis thaliana HOM05D007146 ORTHO05D008971 2.0e-165 586.6 556 55.6
CAN.G943.29 Capsicum annuum HOM05D007146 ORTHO05D008971 3.7e-164 582.4 561 55.6
Manes.03G082700 Manihot esculenta HOM05D007146 ORTHO05D008971 4.9e-164 582.0 566 56.7
Solyc07g066340.3 Solanum lycopersicum HOM05D007146 ORTHO05D008971 4.9e-164 582.0 568 55.6
vmacro11655 Vaccinium macrocarpon HOM05D007146 ORTHO05D008971 4.1e-163 578.9 619 51.9
Thhalv10007372m.g Eutrema salsugineum HOM05D007146 ORTHO05D008971 5.4e-163 578.6 553 55.2
Sopen07g034520 Solanum pennellii HOM05D007146 ORTHO05D008971 7.0e-163 578.2 567 54.9
A06p12640 Brassica napus HOM05D007146 ORTHO05D008971 9.2e-163 577.8 554 56.0
AL1G28820 Arabidopsis lyrata HOM05D007146 ORTHO05D008971 1.2e-162 577.4 556 55.4
BolC5t30209H Brassica oleracea HOM05D007146 ORTHO05D008971 2.0e-162 576.6 556 54.7
PGSC0003DMG401022133 Solanum tuberosum HOM05D007146 ORTHO05D008971 3.5e-162 575.9 568 55.1
C05p14940 Brassica napus HOM05D007146 ORTHO05D008971 1.3e-161 573.9 553 54.1
Cc05_g15970 Coffea canephora HOM05D007146 ORTHO05D008971 3.0e-161 572.8 566 53.7
Aa31LG7G1140 Aethionema arabicum HOM05D007146 ORTHO05D008971 1.1e-160 570.9 555 56.0
BcaC05g25529 Brassica carinata HOM05D007146 ORTHO05D008971 7.3e-160 568.2 563 54.0
Aqoxy4G00043_Aqoxy4G00044 Aquilegia oxysepala HOM05D007146 ORTHO05D008971 6.2e-159 565.1 581 52.5
Carub.0001s1639 Capsella rubella HOM05D007146 ORTHO05D008971 6.2e-159 565.1 553 55.0
Peaxi162Scf00232g01133 Petunia axillaris HOM05D007146 ORTHO05D008971 6.2e-159 565.1 574 52.6
Oeu002808.1 Olea europaea HOM05D007146 ORTHO05D008971 7.5e-157 558.1 659 48.9
HanXRQChr05g0160631 Helianthus annuus HOM05D007146 ORTHO05D008971 2.9e-156 556.2 556 53.2
BraA06t24425Z Brassica rapa HOM05D007146 ORTHO05D008971 3.2e-155 552.7 573 52.4
PSO675G2245 Papaver somniferum HOM05D007146 ORTHO05D008971 5.4e-155 552.0 587 51.3
SalBow8G2846 Salvia bowleyana HOM05D007146 ORTHO05D008971 2.1e-154 550.1 564 50.7
PSO541G2405 Papaver somniferum HOM05D007146 ORTHO05D008971 1.7e-153 547.0 577 51.1
SGA_v2.0_scaffold186G40227 Striga asiatica HOM05D007146 ORTHO05D008971 8.6e-153 544.7 564 52.0
Gohir.D08G252900 Gossypium hirsutum HOM05D007146 ORTHO05D008971 7.3e-152 541.6 507 56.4
Duzib213G0540 Durio zibethinus HOM05D007146 ORTHO05D008971 1.1e-150 537.7 525 55.8
HPP92_018693 Vanilla planifolia HOM05D007146 ORTHO05D008971 2.0e-149 533.5 576 51.7
FAN21G1125 Fragaria x ananassa HOM05D007146 ORTHO05D008971 2.6e-149 533.1 501 56.1
ATR1098G072 Amborella trichopoda HOM05D007146 ORTHO05D008971 4.9e-148 528.9 571 50.1
EL10Ac4g08556 Beta vulgaris HOM05D007146 ORTHO05D008971 1.6e-143 513.8 524 51.5
HPP92_018676 Vanilla planifolia HOM05D007146 ORTHO05D008971 9.9e-141 504.6 540 52.8
Lsat_1_v5_gn_9_46800 Lactuca sativa HOM05D007146 ORTHO05D008971 1.2e-138 497.7 586 47.6
MELO3C010557.2 Cucumis melo HOM05D007146 ORTHO05D008971 1.6e-138 497.3 560 49.3
Os12g0610500 Oryza sativa ssp. japonica HOM05D007146 ORTHO05D008971 1.3e-137 494.2 565 48.1
MBI02_g25677_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 1.4e-134 484.2 525 49.7
Nitab4.5_0002933g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 2.1e-130 470.3 562 47.3
Gohir.A08G232700 Gossypium hirsutum HOM05D007146 ORTHO05D008971 4.2e-123 446.0 505 48.5
Zm00001eb135900 Zea mays HOM05D007146 ORTHO05D008971 1.8e-121 440.7 504 48.0
unitig_749.g13702 Utricularia gibba HOM05D007146 ORTHO05D008971 8.7e-121 438.3 582 46.0
Nitab4.5_0000313g0010 Nicotiana tabacum HOM05D007146 ORTHO05D008971 8.1e-119 431.8 379 58.3
Pp3c14_6050 Physcomitrium patens HOM05D007146 ORTHO05D008971 1.3e-105 387.9 539 40.3
Pp3c1_21800 Physcomitrium patens HOM05D007146 ORTHO05D008971 1.3e-105 387.9 576 39.4
Ah.06g187050 Amaranthus hybridus HOM05D007146 ORTHO05D008971 1.2e-101 374.8 444 46.4
Ca_03693_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 4.5e-101 372.9 202 90.6
Migut.M01565 Erythranthe guttata HOM05D007146 ORTHO05D008971 1.3e-100 371.3 360 53.1
SMO143G0033 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 3.9e-97 359.8 529 39.5
TAR627G0841 Trochodendron aralioides HOM05D007146 ORTHO05D008971 1.7e-95 354.4 376 52.9
Ciclev10021587m.g Citrus clementina HOM05D007146 ORTHO05D008971 1.7e-92 344.4 279 62.4
Lj8C186T10 Lonicera japonica HOM05D007146 ORTHO05D008971 1.4e-91 341.3 374 52.4
Thecc.07G156000 Theobroma cacao HOM05D007146 ORTHO05D008971 3.2e-91 340.1 283 60.4
AagrBONN_evm.TU.Sc2ySwM_368.537 Anthoceros agrestis HOM05D007146 ORTHO05D008971 2.3e-89 334.0 446 45.3
Sp1g14790 Schrenkiella parvula HOM05D007146 ORTHO05D008971 3.0e-89 333.6 360 52.2
Ca_03695_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 6.7e-89 332.4 192 87.5
Ca_03700_v3 Cicer arietinum L. HOM05D007146 ORTHO05D008971 6.7e-89 332.4 192 87.5
MSTRG.16117 Avicennia marina HOM05D007146 ORTHO05D008971 1.1e-78 298.5 287 54.0
AUR62041925 Chenopodium quinoa HOM05D007146 ORTHO05D008971 1.8e-70 271.2 290 49.7
Thecc.07G156300 Theobroma cacao HOM05D007146 ORTHO05D008971 9.1e-70 268.9 258 57.0
CDE03G0452 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 1.9e-67 261.2 444 39.0
Ciclev10022203m.g Citrus clementina HOM05D007146 ORTHO05D008971 6.8e-57 226.1 212 57.5
SEGI_13316 Sequoiadendron giganteum HOM05D007146 ORTHO05D008971 8.0e-50 202.6 240 47.5
CARHR017120 Cardamine hirsuta HOM05D007146 ORTHO05D008971 5.6e-43 179.9 188 54.8
Cpa.g.sc10.30 Carica papaya HOM05D007146 ORTHO05D008971 7.1e-38 162.9 192 49.0
DCAR_002379 Daucus carota HOM05D007146 ORTHO05D008971 8.6e-36 156.0 216 43.5
Hund10273 Selenicereus undatus HOM05D007146 ORTHO05D008971 5.6e-35 153.3 124 58.9
Ah.06g187020 Amaranthus hybridus HOM05D007146 ORTHO05D008971 3.8e-31 140.6 191 44.0
Cpa.g.sc10.33 Carica papaya HOM05D007146 ORTHO05D008971 3.2e-30 137.5 96 65.6
Sc07g0003080 Simmondsia chinensis HOM05D007146 ORTHO05D008971 6.6e-28 129.8 100 61.0
CDE03G0405 Ceratophyllum demersum HOM05D007146 ORTHO05D008971 1.9e-27 128.3 118 48.3
Hund10306 Selenicereus undatus HOM05D007146 ORTHO05D008971 3.8e-23 114.0 149 49.0
Haze_08528 Corylus avellana HOM05D007146 ORTHO05D008971 4.0e-17 94.0 133 44.4
SMO246G0022 Selaginella moellendorffii HOM05D007146 ORTHO05D008971 5.6e-11 73.6 68 57.4
Cfa023972 Carpinus fangiana HOM05D007146 ORTHO05D008971 5.8e-08 63.5 316 25.0
MBI02_g40068_MAGBIO Magnolia biondii HOM05D007146 ORTHO05D008971 1.7e-07 62.0 148 30.4


User provided reference genes

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