Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 1.5e-204 716.1 395 100.0
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 4.5e-132 475.3 409 71.6
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 3.4e-116 422.5 405 67.4
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 3.4e-116 422.5 405 67.4
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 4.1e-93 345.9 385 61.0
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 1.0e-83 314.7 412 54.6
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 7.0e-77 292.0 426 52.8
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 5.1e-67 259.2 467 47.3
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 3.6e-65 253.1 459 46.0
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 6.6e-59 232.3 381 49.6
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 3.6e-49 199.9 277 60.3
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 1.4e-48 198.0 400 43.8
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 1.3e-46 191.4 400 42.8
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 5.1e-43 179.5 410 39.0
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 1.6e-41 174.5 399 40.4
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 4.0e-40 169.9 374 38.5
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 4.2e-37 159.8 388 36.9
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 1.6e-36 157.9 389 38.8
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 2.7e-36 157.1 342 39.5
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 4.3e-34 149.8 381 38.6
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 9.6e-34 148.7 411 36.7
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 2.4e-32 144.1 345 39.4
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 5.3e-32 142.9 377 36.6
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.5e-31 141.4 371 34.0
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 5.8e-31 139.4 402 36.1
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 3.8e-30 136.7 403 34.5
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 2.5e-29 134.0 415 34.5
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 3.2e-29 133.7 369 35.0
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 7.1e-29 132.5 397 35.8
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 9.3e-29 132.1 402 33.3
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 9.3e-29 132.1 377 35.5
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.9e-27 126.7 386 33.4
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 1.1e-26 125.2 372 35.5
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 4.3e-26 123.2 324 37.0
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 5.6e-26 122.9 395 32.9
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 1.1e-24 118.6 107 63.6
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 2.4e-24 117.5 370 35.7
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 6.9e-24 115.9 367 33.8
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 5.8e-23 112.8 372 34.4
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 1.7e-22 111.3 366 33.1
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.7e-22 111.3 378 33.6
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 6.5e-22 109.4 367 33.8
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 6.5e-22 109.4 381 32.0
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 7.1e-21 105.9 368 32.6
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 4.6e-20 103.2 373 33.0
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 7.9e-20 102.4 373 33.0
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 7.9e-20 102.4 373 33.0
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 7.9e-20 102.4 377 35.3
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 7.9e-20 102.4 344 33.1
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 1.0e-19 102.1 395 33.9
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 1.3e-19 101.7 343 32.7
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 3.9e-19 100.1 318 34.0
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 5.1e-19 99.8 402 32.8
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 6.7e-19 99.4 527 29.2
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 1.9e-18 97.8 407 32.4
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 1.9e-18 97.8 358 31.8
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 2.5e-18 97.4 192 38.5
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 2.5e-18 97.4 345 30.4
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 7.4e-18 95.9 387 32.6
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.2e-17 94.4 373 31.6
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.8e-17 93.2 342 31.9
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 4.8e-17 93.2 361 31.6
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 6.9e-16 89.4 411 32.8
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 2.6e-15 87.4 525 27.6
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.6e-15 87.4 525 27.6
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 3.4e-15 87.0 379 31.1
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 3.4e-15 87.0 369 29.5
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.5e-15 86.7 103 47.6
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 5.9e-15 86.3 83 57.8
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 7.7e-15 85.9 82 57.3
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 1.7e-14 84.7 354 28.2
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 1.7e-14 84.7 136 43.4
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 2.2e-14 84.3 369 30.4
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 2.2e-14 84.3 383 30.8
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 2.9e-14 84.0 373 29.0
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 6.5e-14 82.8 525 27.2
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 1.1e-13 82.0 386 32.9
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 2.5e-13 80.9 90 55.6
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.5e-13 80.9 389 26.5
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 2.5e-13 80.9 87 56.3
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 5.5e-13 79.7 521 27.1
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 9.4e-13 79.0 358 29.3
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.2e-12 78.6 53 71.7
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 1.2e-12 78.6 53 71.7
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.1e-12 77.8 60 66.7
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 3.6e-12 77.0 325 29.2
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 3.6e-12 77.0 200 34.5
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 4.6e-12 76.6 325 28.0
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 7.9e-12 75.9 302 29.8
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 1.0e-11 75.5 159 40.3
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 1.4e-11 75.1 201 34.8
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.8e-11 74.7 290 28.3
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 2.3e-11 74.3 384 27.9
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.3e-11 74.3 307 28.7
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 6.7e-11 72.8 172 35.5
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 6.7e-11 72.8 330 30.9
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 1.1e-10 72.0 375 29.6
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 2.0e-10 71.2 382 28.8
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 2.0e-10 71.2 414 29.5
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 3.3e-10 70.5 427 25.8
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 4.3e-10 70.1 47 74.5
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 7.4e-10 69.3 79 54.4
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 9.7e-10 68.9 372 28.0
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 9.7e-10 68.9 227 30.4
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 1.3e-09 68.6 66 53.0
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 1.1e-08 65.5 290 29.7
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 3.1e-08 63.9 376 29.8
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.2e-07 62.0 185 34.1
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 2.0e-07 61.2 368 27.7
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.5e-07 60.1 187 30.5
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 2.9e-06 57.4 88 42.0
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 2.9e-06 57.4 253 29.6
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 3.8e-06 57.0 63 55.6
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 5.0e-06 56.6 367 26.4
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 6.5e-06 56.2 319 26.3
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 8.5e-06 55.8 389 23.7
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 8.5e-06 55.8 79 41.8


User provided reference genes

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