Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9756 Trifolium pratense HOM05D005971 ORTHO05D007459 0.0e+00 2071.2 1025 100.0
Psat1g011400 Pisum sativum HOM05D005971 ORTHO05D007459 0.0e+00 1885.2 1023 90.9
Medtr2g069560 Medicago truncatula HOM05D005971 ORTHO05D007459 0.0e+00 1884.8 1026 90.7
Ca_03684_v3 Cicer arietinum L. HOM05D005971 ORTHO05D007459 0.0e+00 1782.3 1018 86.4
Lj3g0007743 Lotus japonicus HOM05D005971 ORTHO05D007459 0.0e+00 1625.1 1017 79.4
Glyma.15G255000 Glycine max HOM05D005971 ORTHO05D007459 0.0e+00 1585.9 1019 78.0
Phvul.005G056400 Phaseolus vulgaris HOM05D005971 ORTHO05D007459 0.0e+00 1557.7 1008 76.6
Lalb_Chr25g0285011 Lupinus albus HOM05D005971 ORTHO05D007459 0.0e+00 1490.7 1016 73.6
arahy.Tifrunner.gnm1.ann1.MUD8D6 Arachis hypogaea HOM05D005971 ORTHO05D007459 0.0e+00 1473.8 1014 73.2
VMungo1080G0173 Vigna mungo HOM05D005971 ORTHO05D007459 0.0e+00 1184.9 832 72.1
QL04p073974 Quercus lobata HOM05D005971 ORTHO05D007459 0.0e+00 1093.2 1057 53.5
Cfa019419 Carpinus fangiana HOM05D005971 ORTHO05D007459 0.0e+00 1085.9 989 55.0
Dinv19623 Davidia involucrata HOM05D005971 ORTHO05D007459 0.0e+00 1085.5 1022 53.5
Potri.001G457550 Populus trichocarpa HOM05D005971 ORTHO05D007459 9.4e-307 1057.0 1008 53.0
MD05G1219300 Malus domestica HOM05D005971 ORTHO05D007459 1.8e-305 1052.7 1024 53.1
Sabra16G0310100 Salix brachista HOM05D005971 ORTHO05D007459 4.5e-301 1038.1 1030 51.9
FvH4_3g15860 Fragaria vesca HOM05D005971 ORTHO05D007459 1.3e-292 1010.0 1019 51.0
FAN11G3334 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.2e-292 1009.2 1019 51.3
RcHm_v2.0_Chr5g0026671 Rosa chinensis HOM05D005971 ORTHO05D007459 1.2e-290 1003.4 1021 51.2
FAN16G0465 Fragaria x ananassa HOM05D005971 ORTHO05D007459 2.1e-290 1002.7 1006 51.6
Atru.chr12.2184 Acer truncatum HOM05D005971 ORTHO05D007459 1.8e-289 999.6 1013 50.1
Ciclev10018677m.g Citrus clementina HOM05D005971 ORTHO05D007459 3.7e-287 991.9 1017 50.1
Duzib268G0338 Durio zibethinus HOM05D005971 ORTHO05D007459 3.1e-278 962.2 1024 49.4
CANSAT80G2256 Cannabis sativa HOM05D005971 ORTHO05D007459 4.1e-278 961.8 1019 49.1
TWI39G0032 Tripterygium wilfordii HOM05D005971 ORTHO05D007459 9.1e-278 960.7 1025 50.1
Lj1C905G3 Lonicera japonica HOM05D005971 ORTHO05D007459 2.3e-273 946.0 1019 49.1
TAR626G0017 Trochodendron aralioides HOM05D005971 ORTHO05D007459 1.7e-271 939.9 1034 48.5
CSS0033662 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 2.2e-271 939.5 992 49.8
Gorai.013G178300 Gossypium raimondii HOM05D005971 ORTHO05D007459 6.3e-271 937.9 1025 48.2
Actinidia35435 Actinidia chinensis HOM05D005971 ORTHO05D007459 2.0e-269 932.9 1031 49.4
CSS0049989 Camellia sinensis var. sinensis HOM05D005971 ORTHO05D007459 1.4e-265 920.2 992 49.2
Prupe.4G140600 Prunus persica HOM05D005971 ORTHO05D007459 1.1e-259 900.6 899 51.4
ClCG11G016380 Citrullus lanatus HOM05D005971 ORTHO05D007459 3.3e-259 899.0 1006 46.6
Manes.14G015836 Manihot esculenta HOM05D005971 ORTHO05D007459 4.6e-253 878.6 844 52.0
Migut.M01561 Erythranthe guttata HOM05D005971 ORTHO05D007459 1.7e-252 876.7 1026 46.0
Oeu052011.1 Olea europaea HOM05D005971 ORTHO05D007459 5.0e-252 875.2 1027 46.5
THA.LOC104822751 Tarenaya hassleriana HOM05D005971 ORTHO05D007459 1.5e-251 873.6 1004 46.7
CsaV3_4G031820 Cucumis sativus L. HOM05D005971 ORTHO05D007459 3.3e-251 872.5 1008 46.3
Aa31LG1G20480 Aethionema arabicum HOM05D005971 ORTHO05D007459 1.7e-247 860.1 1001 44.7
Sopen10g001570 Solanum pennellii HOM05D005971 ORTHO05D007459 2.9e-247 859.4 1023 45.2
CAN.G492.69 Capsicum annuum HOM05D005971 ORTHO05D007459 1.2e-245 854.0 1027 44.5
PGR031G0315 Punica granatum HOM05D005971 ORTHO05D007459 4.6e-245 852.0 1017 45.4
AL1G14000 Arabidopsis lyrata HOM05D005971 ORTHO05D007459 1.1e-243 847.4 1003 45.0
Carub.0001s0356 Capsella rubella HOM05D005971 ORTHO05D007459 4.7e-242 842.0 1005 44.9
PSO675G3107 Papaver somniferum HOM05D005971 ORTHO05D007459 4.0e-241 839.0 1031 44.8
AT1G04390 Arabidopsis thaliana HOM05D005971 ORTHO05D007459 1.5e-240 837.0 1003 44.5
Cc05_g16010 Coffea canephora HOM05D005971 ORTHO05D007459 9.9e-240 834.3 1020 44.3
PSO017G5934 Papaver somniferum HOM05D005971 ORTHO05D007459 1.2e-237 827.4 1036 44.3
Sed0013026 Sechium edule HOM05D005971 ORTHO05D007459 6.9e-233 811.6 924 45.7
BolC5t29039H Brassica oleracea HOM05D005971 ORTHO05D007459 8.9e-233 811.2 1003 44.1
SGA_v2.0_scaffold7G03577 Striga asiatica HOM05D005971 ORTHO05D007459 2.0e-232 810.1 1004 44.0
C05p02580 Brassica napus HOM05D005971 ORTHO05D007459 1.7e-231 807.0 1004 44.1
A10p02830 Brassica napus HOM05D005971 ORTHO05D007459 2.2e-231 806.6 1003 43.8
Peaxi162Scf00267g01016 Petunia axillaris HOM05D005971 ORTHO05D007459 1.1e-230 804.3 1002 43.6
Nitab4.5_0000611g0060 Nicotiana tabacum HOM05D005971 ORTHO05D007459 1.2e-229 800.8 981 44.6
GSVIVG01020430001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.0e-228 797.7 934 45.4
Ah.06g185720 Amaranthus hybridus HOM05D005971 ORTHO05D007459 3.1e-225 786.2 1037 41.9
Lsat_1_v5_gn_7_71401 Lactuca sativa HOM05D005971 ORTHO05D007459 3.0e-220 769.6 1032 43.6
ECA240G1928 Erigeron canadensis HOM05D005971 ORTHO05D007459 8.7e-220 768.1 999 42.8
Solyc10g005600.4 Solanum lycopersicum HOM05D005971 ORTHO05D007459 5.6e-219 765.4 1020 42.9
EL10Ac2g03354 Beta vulgaris HOM05D005971 ORTHO05D007459 1.8e-217 760.4 1010 40.9
Atru.chr12.2179 Acer truncatum HOM05D005971 ORTHO05D007459 9.0e-217 758.1 745 49.7
Aqoxy2G04113 Aquilegia oxysepala HOM05D005971 ORTHO05D007459 7.6e-216 755.0 1033 40.6
vmacro09786 Vaccinium macrocarpon HOM05D005971 ORTHO05D007459 1.1e-214 751.1 1027 42.8
Nitab4.5_0004488g0030 Nicotiana tabacum HOM05D005971 ORTHO05D007459 7.1e-214 748.4 1006 42.4
DCAR_009638 Daucus carota HOM05D005971 ORTHO05D007459 4.6e-213 745.7 970 42.6
FAN21G1476 Fragaria x ananassa HOM05D005971 ORTHO05D007459 1.8e-212 743.8 1012 42.3
HanXRQChr05g0160991 Helianthus annuus HOM05D005971 ORTHO05D007459 1.8e-212 743.8 1020 41.9
Thecc.07G154200 Theobroma cacao HOM05D005971 ORTHO05D007459 5.3e-209 732.3 834 47.8
Rhsim04G0005800 Rhododendron simsii HOM05D005971 ORTHO05D007459 6.9e-209 731.9 1144 39.5
GSVIVG01020427001 Vitis vinifera HOM05D005971 ORTHO05D007459 4.6e-205 719.2 934 43.0
SalBow8G3201 Salvia bowleyana HOM05D005971 ORTHO05D007459 1.5e-203 714.1 1034 39.2
BraA10t42550Z Brassica rapa HOM05D005971 ORTHO05D007459 2.1e-197 693.7 1004 39.9
Sc06g0001560 Simmondsia chinensis HOM05D005971 ORTHO05D007459 9.4e-190 668.3 752 45.1
Thhalv10006788m.g Eutrema salsugineum HOM05D005971 ORTHO05D007459 8.2e-186 655.2 1004 38.1
Eucgr.F03182 Eucalyptus grandis HOM05D005971 ORTHO05D007459 3.1e-185 653.3 751 44.9
Nn7g37820 Nelumbo nucifera HOM05D005971 ORTHO05D007459 7.9e-181 638.6 830 42.9
AUR62038398 Chenopodium quinoa HOM05D005971 ORTHO05D007459 2.8e-178 630.2 1029 37.4
MBI02_g40085_MAGBIO Magnolia biondii HOM05D005971 ORTHO05D007459 1.8e-177 627.5 860 40.1
CARHR003720 Cardamine hirsuta HOM05D005971 ORTHO05D007459 7.7e-176 622.1 717 45.3
MELO3C010564.2 Cucumis melo HOM05D005971 ORTHO05D007459 7.7e-176 622.1 1010 38.3
Hund12466 Selenicereus undatus HOM05D005971 ORTHO05D007459 3.6e-173 613.2 893 38.2
Hma1.2p1_0637F.1_g193590 Hydrangea macrophylla HOM05D005971 ORTHO05D007459 5.2e-172 609.4 1090 36.0
Sp1g03210 Schrenkiella parvula HOM05D005971 ORTHO05D007459 1.4e-169 601.3 714 43.4
Cpa.g.sc10.37 Carica papaya HOM05D005971 ORTHO05D007459 1.4e-156 558.1 805 40.4
Gohir.D13G157500 Gossypium hirsutum HOM05D005971 ORTHO05D007459 1.5e-155 554.7 584 47.3
ATR0165G004 Amborella trichopoda HOM05D005971 ORTHO05D007459 1.8e-145 521.2 1035 32.7
PGSC0003DMG402011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 5.6e-142 509.6 573 45.2
CDE12G0091 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 2.4e-121 441.0 753 36.7
Gohir.A13G153066 Gossypium hirsutum HOM05D005971 ORTHO05D007459 5.1e-119 433.3 425 49.6
Zm00001eb273960 Zea mays HOM05D005971 ORTHO05D007459 7.1e-113 412.9 878 32.5
PGSC0003DMG401011239 Solanum tuberosum HOM05D005971 ORTHO05D007459 1.4e-97 362.1 447 46.8
Gohir.A13G153099 Gossypium hirsutum HOM05D005971 ORTHO05D007459 3.4e-91 340.9 490 44.3
FAN25G3291 Fragaria x ananassa HOM05D005971 ORTHO05D007459 9.7e-86 322.8 376 48.4
unitig_26.g10082 Utricularia gibba HOM05D005971 ORTHO05D007459 1.7e-82 312.0 1008 26.1
Mapoly0060s0028 Marchantia polymorpha HOM05D005971 ORTHO05D007459 2.5e-78 298.1 1009 26.0
Pp3c6_21780 Physcomitrium patens HOM05D005971 ORTHO05D007459 1.3e-77 295.8 1035 24.8
Cpa.g.sc10.38 Carica papaya HOM05D005971 ORTHO05D007459 5.3e-68 263.8 194 57.7
VMungo1080G1570 Vigna mungo HOM05D005971 ORTHO05D007459 3.8e-66 257.7 140 87.1
arahy.Tifrunner.gnm1.ann1.Q40ZT9 Arachis hypogaea HOM05D005971 ORTHO05D007459 6.3e-61 240.4 157 73.9
HPP92_026349 Vanilla planifolia HOM05D005971 ORTHO05D007459 1.4e-60 239.2 519 34.9
HPP92_026348 Vanilla planifolia HOM05D005971 ORTHO05D007459 1.5e-57 229.2 295 39.7
Nn7g37821 Nelumbo nucifera HOM05D005971 ORTHO05D007459 1.9e-57 228.8 200 51.0
Atru.chr12.2180 Acer truncatum HOM05D005971 ORTHO05D007459 5.7e-54 217.2 232 53.0
Peaxi162Scf00095g00013 Petunia axillaris HOM05D005971 ORTHO05D007459 7.7e-51 206.8 260 46.5
Haze_08564 Corylus avellana HOM05D005971 ORTHO05D000006 5.5e-49 200.7 142 64.1
Os06g0674800 Oryza sativa ssp. japonica HOM05D005971 ORTHO05D007459 2.3e-47 195.3 429 32.9
Glyma.13G358366 Glycine max HOM05D005971 ORTHO05D007459 5.2e-47 194.1 148 75.7
Peaxi162Scf01123g00003 Petunia axillaris HOM05D005971 ORTHO05D007459 8.8e-47 193.4 438 30.4
Glyma.13G098800 Glycine max HOM05D005971 ORTHO05D007459 2.0e-46 192.2 148 75.0
CARHR003730 Cardamine hirsuta HOM05D005971 ORTHO05D007459 2.2e-45 188.7 236 45.8
Peaxi162Scf01123g00008 Petunia axillaris HOM05D005971 ORTHO05D007459 2.7e-43 181.8 237 42.2
GSVIVG01020426001 Vitis vinifera HOM05D005971 ORTHO05D007459 4.1e-36 157.9 178 46.1
GSVIVG01020425001 Vitis vinifera HOM05D005971 ORTHO05D007459 1.0e-34 153.3 162 45.1
Gohir.D13G157600 Gossypium hirsutum HOM05D005971 ORTHO05D007459 6.6e-34 150.6 195 49.7
Glyma.08G171633 Glycine max HOM05D005971 ORTHO05D007459 4.7e-32 144.4 92 72.8
Glyma.13G358300 Glycine max HOM05D005971 ORTHO05D007459 4.1e-28 131.3 183 52.5
COL.COLO4_20820 Corchorus olitorius HOM05D005971 ORTHO05D007459 5.6e-25 120.9 122 50.0
Zm00001eb395680 Zea mays HOM05D005971 ORTHO05D007459 2.8e-24 118.6 254 29.5
Glyma.13G052600 Glycine max HOM05D005971 ORTHO05D007459 1.5e-22 112.8 127 55.1
C03p00610 Brassica napus HOM05D005971 ORTHO05D040551 2.3e-18 99.0 155 38.7
Glyma.13G099100 Glycine max HOM05D005971 ORTHO05D007459 6.6e-18 97.4 88 58.0
Glyma.08G171600 Glycine max HOM05D005971 ORTHO05D007459 9.5e-17 93.6 54 79.6
Glyma.13G052500 Glycine max HOM05D005971 ORTHO05D007459 3.1e-15 88.6 63 63.5
Glyma.13G098900 Glycine max HOM05D005971 ORTHO05D007459 2.6e-14 85.5 63 61.9
CDE12G0613 Ceratophyllum demersum HOM05D005971 ORTHO05D007459 3.7e-13 81.6 94 40.4
Medtr2g073720 Medicago truncatula HOM05D005971 ORTHO05D007459 2.3e-10 72.4 134 41.0
Sc06g0001570 Simmondsia chinensis HOM05D005971 ORTHO05D007459 8.6e-10 70.5 98 42.9
BolC3t12626H Brassica oleracea HOM05D005971 ORTHO05D040551 1.2e-08 66.6 153 31.4
Medtr2g082550 Medicago truncatula HOM05D000001 ORTHO05D010372 3.6e-08 65.1 47 63.8
Glyma.13G099002 Glycine max HOM05D032893 ORTHO05D007459 3.1e-07 62.0 69 58.0
CAN.G1199.4 Capsicum annuum HOM05D002053 ORTHO05D007459 1.5e-06 59.7 45 55.6
GSVIVG01020432001 Vitis vinifera HOM05D005971 ORTHO05D007459 7.6e-06 57.4 84 41.7


User provided reference genes

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