Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 7.0e-220 766.9 371 100.0
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 2.5e-209 731.9 366 95.9
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.6e-208 729.2 367 95.6
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 1.8e-207 725.7 367 94.3
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 1.2e-198 696.4 367 91.0
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 3.4e-198 694.9 367 90.2
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 2.4e-196 688.7 363 90.9
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 5.4e-196 687.6 367 88.8
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 7.8e-195 683.7 367 89.1
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 8.6e-194 680.2 367 89.4
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 3.7e-189 664.8 369 86.7
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 3.1e-183 645.2 367 85.6
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 6.0e-179 630.9 365 80.5
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 2.3e-178 629.0 368 81.2
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 2.3e-178 629.0 368 80.7
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.9e-178 628.2 368 81.0
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 8.7e-178 627.1 368 81.0
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 2.1e-176 622.5 368 80.2
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-175 620.2 368 80.2
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.8e-175 619.4 367 79.3
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.8e-175 619.4 367 79.3
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 1.8e-175 619.4 368 80.2
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 4.0e-175 618.2 364 79.7
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.2e-174 616.7 367 78.2
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 1.2e-174 616.7 366 79.5
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.2e-174 616.7 368 79.1
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 3.4e-174 615.1 368 77.7
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 9.9e-174 613.6 363 80.2
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.9e-174 613.6 361 80.1
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.3e-173 613.2 368 79.3
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 1.7e-173 612.8 366 79.5
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.2e-173 612.5 361 79.5
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 2.2e-173 612.5 368 78.3
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 4.9e-173 611.3 367 79.3
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 8.4e-173 610.5 361 79.5
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 2.4e-172 609.0 367 77.7
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 7.1e-172 607.4 372 78.5
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 1.6e-171 606.3 368 77.4
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 1.6e-171 606.3 366 77.6
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 6.0e-171 604.4 365 78.6
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.3e-170 603.2 363 77.7
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 6.6e-170 600.9 363 77.1
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 1.5e-169 599.7 363 79.3
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 5.6e-169 597.8 363 77.1
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 1.4e-167 593.2 366 77.6
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 3.1e-167 592.0 368 76.6
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 5.3e-167 591.3 367 74.9
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 6.9e-167 590.9 366 74.6
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 6.9e-167 590.9 369 75.9
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.6e-166 589.0 363 75.2
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.2e-165 585.9 366 76.2
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.2e-165 585.9 346 79.5
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 4.9e-165 584.7 354 79.4
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 8.4e-165 583.9 363 75.2
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 1.4e-164 583.2 368 73.9
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 2.4e-164 582.4 368 74.2
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 2.7e-163 578.9 363 74.1
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 3.0e-162 575.5 366 74.9
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 3.0e-162 575.5 366 74.3
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 6.7e-162 574.3 363 72.5
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 1.1e-161 573.5 366 74.3
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 1.9e-161 572.8 368 73.9
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 4.3e-161 571.6 365 75.1
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.3e-160 570.1 365 74.8
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.3e-160 570.1 365 74.8
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.4e-159 566.6 363 74.9
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 5.3e-159 564.7 363 74.1
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 3.4e-158 562.0 368 73.1
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 4.5e-158 561.6 367 73.0
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.1e-156 557.0 348 75.3
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 4.2e-156 555.1 367 72.5
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 2.7e-155 552.4 363 74.1
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 3.5e-155 552.0 320 81.9
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 7.9e-155 550.8 392 67.6
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 3.9e-154 548.5 370 72.4
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 4.3e-153 545.0 361 70.1
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 5.7e-153 544.7 368 72.0
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 1.3e-152 543.5 368 72.3
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 2.1e-152 542.7 367 70.8
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 6.3e-152 541.2 365 70.1
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.4e-151 540.0 367 71.9
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.4e-151 540.0 361 73.1
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 4.1e-151 538.5 367 71.7
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 5.3e-151 538.1 369 70.2
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 6.9e-151 537.7 368 71.7
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.5e-150 536.6 412 63.8
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.5e-150 536.6 366 69.4
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 2.0e-150 536.2 370 71.1
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 2.0e-150 536.2 366 68.9
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 2.6e-150 535.8 368 71.2
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 4.5e-150 535.0 366 72.1
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 7.6e-150 534.3 368 71.2
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 1.7e-149 533.1 368 70.7
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.9e-149 532.3 359 72.7
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 6.5e-149 531.2 368 70.9
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 8.4e-149 530.8 320 77.5
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 8.4e-149 530.8 364 71.4
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 1.1e-148 530.4 368 71.2
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 1.4e-148 530.0 367 70.8
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.9e-148 529.6 366 71.3
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.9e-148 529.6 366 71.3
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.5e-148 529.3 368 70.9
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 9.3e-148 527.3 367 70.3
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 7.9e-147 524.2 374 70.1
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 7.9e-147 524.2 367 68.9
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 1.0e-146 523.9 368 70.7
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.9e-146 521.9 368 70.7
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 2.0e-142 509.6 368 68.8
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.2e-139 500.4 375 66.4
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.7e-136 490.0 373 63.5
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 1.1e-127 460.7 362 64.4
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 5.3e-127 458.4 408 56.6
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 3.5e-126 455.7 370 61.1
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 8.5e-125 451.1 396 58.3
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.5e-124 450.3 363 63.9
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.0e-122 444.1 282 73.8
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.6e-115 420.2 329 67.5
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 2.3e-106 389.8 234 79.9
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 6.3e-104 381.7 363 52.6
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 9.5e-100 367.9 366 52.5
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 2.8e-99 366.3 444 44.6
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.9e-94 348.6 287 66.6
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 2.3e-93 346.7 242 67.8
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 7.0e-87 325.1 371 46.1
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.7e-86 323.2 203 74.9
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 5.0e-85 318.9 368 48.4
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.8e-74 283.9 248 60.9
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.7e-72 277.3 379 43.0
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 3.2e-71 273.1 164 74.4
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 8.7e-61 238.4 390 35.9
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 3.1e-58 229.9 388 37.1
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 8.4e-56 221.9 170 67.1
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.8e-53 214.2 302 43.4
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 3.0e-53 213.4 363 38.3
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 8.7e-53 211.8 205 52.7
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 2.5e-52 210.3 207 53.1
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.1e-50 204.9 198 53.5
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 9.3e-47 191.8 164 59.8
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 5.1e-45 186.0 204 52.0
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 5.6e-44 182.6 323 35.6
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 4.0e-42 176.4 107 78.5
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 2.9e-40 170.2 168 55.4
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 3.8e-40 169.9 122 66.4
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.7e-35 153.3 83 78.3
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.7e-35 153.3 83 78.3
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 4.8e-35 152.9 314 32.5
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.3e-35 152.5 83 78.3
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 5.9e-33 146.0 122 59.8
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 2.9e-32 143.7 92 70.7
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 4.2e-31 139.8 103 60.2
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 7.4e-28 129.0 67 91.0
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 9.7e-28 128.6 76 68.4
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 1.1e-20 105.1 125 51.2
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 2.4e-18 97.4 58 79.3


User provided reference genes

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