Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 2.1e-35 151.8 73 100.0
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 8.3e-32 139.8 73 90.4
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 7.7e-30 133.3 73 86.3
Psat1g003560 Pisum sativum HOM05D002385 ORTHO05D002245 1.3e-29 132.5 74 83.8
Psat1g003480 Pisum sativum HOM05D002385 ORTHO05D002245 1.7e-29 132.1 73 83.6
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 2.2e-24 115.2 77 74.0
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 1.6e-22 109.0 70 78.6
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 4.5e-22 107.5 73 74.0
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 5.9e-22 107.1 70 78.6
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 1.5e-20 102.4 70 77.1
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 1.9e-20 102.1 70 74.3
Lalb_Chr25g0284941 Lupinus albus HOM05D002385 ORTHO05D002245 2.6e-17 91.7 78 64.1
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 1.4e-15 85.9 79 57.0
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 4.1e-15 84.3 79 58.2
Glyma.08G171000 Glycine max HOM05D002385 ORTHO05D002245 1.6e-14 82.4 73 61.6
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 7.8e-14 80.1 79 57.0
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 8.6e-13 76.6 77 57.1
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 1.9e-12 75.5 76 53.9
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 5.6e-12 73.9 77 55.8
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 7.3e-12 73.6 80 57.5
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 1.6e-11 72.4 48 68.8
Glyma.08G172300 Glycine max HOM05D002385 ORTHO05D002245 2.8e-11 71.6 74 55.4
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 2.8e-11 71.6 64 56.2
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 3.6e-11 71.2 81 56.8
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 4.7e-11 70.9 46 63.0
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 8.0e-11 70.1 77 54.5
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 1.0e-10 69.7 72 51.4
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.3e-10 68.6 80 43.8
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 2.3e-10 68.6 76 52.6
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 3.1e-10 68.2 68 54.4
Lalb_Chr20g0108741 Lupinus albus HOM05D002385 ORTHO05D002245 4.0e-10 67.8 81 48.1
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 4.0e-10 67.8 80 53.8
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 5.2e-10 67.4 77 55.8
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 5.2e-10 67.4 76 51.3
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 5.2e-10 67.4 76 51.3
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 5.2e-10 67.4 72 51.4
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 5.2e-10 67.4 76 53.9
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 6.8e-10 67.0 64 53.1
Glyma.08G170800 Glycine max HOM05D002385 ORTHO05D002245 8.9e-10 66.6 78 50.0
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 8.9e-10 66.6 73 50.7
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 1.2e-09 66.2 46 63.0
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 1.5e-09 65.9 76 47.4
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 1.5e-09 65.9 72 51.4
CiPaw.11G059900 Carya illinoinensis HOM05D002385 ORTHO05D002245 2.0e-09 65.5 95 42.1
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 2.6e-09 65.1 65 50.8
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.6e-09 65.1 76 53.9
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 3.4e-09 64.7 68 51.5
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 3.4e-09 64.7 72 51.4
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 4.4e-09 64.3 73 52.1
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.4e-09 64.3 77 53.2
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 5.8e-09 63.9 74 48.6
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 5.8e-09 63.9 78 51.3
arahy.Tifrunner.gnm1.ann1.7QB2HQ Arachis hypogaea HOM05D002385 ORTHO05D002245 7.5e-09 63.5 89 47.2
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 7.5e-09 63.5 76 52.6
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 9.8e-09 63.2 67 47.8
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 9.8e-09 63.2 74 52.7
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 9.8e-09 63.2 69 44.9
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 1.3e-08 62.8 44 65.9
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.7e-08 62.4 76 52.6
Oeu012375.1 Olea europaea HOM05D002385 ORTHO05D002245 1.7e-08 62.4 76 51.3
BolC5t29144H Brassica oleracea HOM05D002385 ORTHO05D002245 2.2e-08 62.0 51 58.8
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 2.2e-08 62.0 72 55.6
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 3.7e-08 61.2 67 46.3
C05p03670 Brassica napus HOM05D002385 ORTHO05D002245 3.7e-08 61.2 51 58.8
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 3.7e-08 61.2 68 51.5
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 3.7e-08 61.2 51 62.7
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 3.7e-08 61.2 71 50.7
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 4.9e-08 60.8 78 47.4
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 4.9e-08 60.8 72 48.6
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 4.9e-08 60.8 67 47.8
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 6.4e-08 60.5 67 46.3
BraA10t42676Z Brassica rapa HOM05D002385 ORTHO05D002245 6.4e-08 60.5 71 47.9
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 6.4e-08 60.5 71 50.7
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 8.3e-08 60.1 80 47.5
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 8.3e-08 60.1 80 47.5
HanXRQChr01g0017681 Helianthus annuus HOM05D002385 ORTHO05D002245 8.3e-08 60.1 52 55.8
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 8.3e-08 60.1 82 42.7
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 8.3e-08 60.1 69 47.8
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 1.1e-07 59.7 67 49.3
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 1.1e-07 59.7 69 52.2
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 1.1e-07 59.7 78 51.3
HPP92_004187 Vanilla planifolia HOM05D002385 ORTHO05D002245 1.1e-07 59.7 84 44.0
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.1e-07 59.7 65 52.3
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.1e-07 59.7 65 52.3
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 1.4e-07 59.3 83 44.6
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.4e-07 59.3 64 51.6
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.4e-07 59.3 61 57.4
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 1.4e-07 59.3 79 49.4
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 1.9e-07 58.9 67 44.8
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 1.9e-07 58.9 50 56.0
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 1.9e-07 58.9 73 47.9
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 1.9e-07 58.9 78 50.0
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 2.4e-07 58.5 61 47.5
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 3.2e-07 58.2 67 44.8
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 3.2e-07 58.2 67 44.8
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 3.2e-07 58.2 67 44.8
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 3.2e-07 58.2 75 45.3
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 3.2e-07 58.2 80 47.5
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 3.2e-07 58.2 67 49.3
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 3.2e-07 58.2 77 50.6
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 4.1e-07 57.8 61 47.5
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 4.1e-07 57.8 59 52.5
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 4.1e-07 57.8 67 44.8
Phvul.005G057200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 5.4e-07 57.4 66 51.5
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 5.4e-07 57.4 72 48.6
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 5.4e-07 57.4 72 48.6
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 7.0e-07 57.0 49 55.1
Phvul.005G057400 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 7.0e-07 57.0 63 49.2
Thhalv10009262m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 9.2e-07 56.6 54 55.6
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 9.2e-07 56.6 63 52.4
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 9.2e-07 56.6 75 48.0
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 1.2e-06 56.2 67 43.3
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 1.2e-06 56.2 67 43.3
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.2e-06 56.2 76 50.0
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 1.2e-06 56.2 63 50.8
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.2e-06 56.2 69 46.4
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 1.2e-06 56.2 78 47.4
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.6e-06 55.8 75 46.7
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 1.6e-06 55.8 74 40.5
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 1.6e-06 55.8 63 49.2
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.6e-06 55.8 71 47.9
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.0e-06 55.5 83 48.2
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 2.0e-06 55.5 77 40.3
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 2.0e-06 55.5 74 40.5
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 2.0e-06 55.5 77 51.9
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 2.0e-06 55.5 51 58.8
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.7e-06 55.1 78 47.4
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 2.7e-06 55.1 50 60.0
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 2.7e-06 55.1 48 60.4
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.7e-06 55.1 59 54.2
Lsat_1_v5_gn_1_82281 Lactuca sativa HOM05D019240 ORTHO05D002245 2.7e-06 55.1 51 54.9
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 2.7e-06 55.1 82 45.1
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 2.7e-06 55.1 64 50.0
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 2.7e-06 55.1 68 48.5
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 3.5e-06 54.7 79 48.1
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 3.5e-06 54.7 79 48.1
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 3.5e-06 54.7 70 48.6
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 3.5e-06 54.7 76 48.7
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.5e-06 54.7 74 40.5
CARHR004830 Cardamine hirsuta HOM05D002385 ORTHO05D002245 4.6e-06 54.3 49 57.1
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 4.6e-06 54.3 68 48.5
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 6.0e-06 53.9 68 50.0
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 6.0e-06 53.9 59 47.5
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 6.0e-06 53.9 50 56.0
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 6.0e-06 53.9 77 45.5
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 7.8e-06 53.5 74 41.9
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 7.8e-06 53.5 72 45.8


User provided reference genes

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