Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 1.2e-33 146.0 74 100.0
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 4.8e-27 124.0 78 83.3
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 1.8e-26 122.1 78 82.1
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 3.1e-26 121.3 76 82.9
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 1.2e-25 119.4 81 79.0
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 3.4e-25 117.9 63 92.1
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 3.5e-22 107.8 77 74.0
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 3.5e-22 107.8 77 74.0
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 4.6e-22 107.5 77 74.0
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 1.3e-21 105.9 78 74.4
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 3.0e-21 104.8 78 74.4
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 1.1e-20 102.8 74 70.3
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 5.6e-20 100.5 79 72.2
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 2.1e-19 98.6 74 62.2
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 2.8e-19 98.2 74 64.9
Phvul.005G057400 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 1.3e-16 89.4 62 64.5
Glyma.08G172300 Glycine max HOM05D002385 ORTHO05D002245 2.4e-15 85.1 80 62.5
Phvul.005G057200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 6.0e-14 80.5 64 60.9
Glyma.08G170800 Glycine max HOM05D002385 ORTHO05D002245 3.0e-13 78.2 76 57.9
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 2.5e-12 75.1 77 59.7
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 4.3e-12 74.3 76 55.3
arahy.Tifrunner.gnm1.ann1.7QB2HQ Arachis hypogaea HOM05D002385 ORTHO05D002245 7.4e-12 73.6 84 53.6
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 1.3e-11 72.8 76 53.9
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 1.6e-11 72.4 76 53.9
Psat1g003480 Pisum sativum HOM05D002385 ORTHO05D002245 3.7e-11 71.2 76 53.9
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 6.2e-11 70.5 75 53.3
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 6.2e-11 70.5 76 55.3
Psat1g003560 Pisum sativum HOM05D002385 ORTHO05D002245 6.2e-11 70.5 78 51.3
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 6.2e-11 70.5 72 59.7
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 8.1e-11 70.1 60 66.7
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 1.4e-10 69.3 72 51.4
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 1.8e-10 68.9 60 63.3
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 1.8e-10 68.9 71 52.1
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 2.4e-10 68.6 61 65.6
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.4e-10 68.6 57 56.1
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 2.4e-10 68.6 61 62.3
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 3.1e-10 68.2 61 55.7
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 3.1e-10 68.2 72 51.4
Lalb_Chr20g0108741 Lupinus albus HOM05D002385 ORTHO05D002245 3.1e-10 68.2 80 43.8
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 3.1e-10 68.2 79 53.2
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 3.1e-10 68.2 54 70.4
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 3.1e-10 68.2 61 50.8
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.0e-10 67.8 75 54.7
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 5.3e-10 67.4 79 51.9
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 5.3e-10 67.4 79 51.9
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 5.3e-10 67.4 73 57.5
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 5.3e-10 67.4 72 51.4
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 6.9e-10 67.0 72 54.2
Lalb_Chr25g0284941 Lupinus albus HOM05D002385 ORTHO05D002245 6.9e-10 67.0 81 49.4
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 9.0e-10 66.6 59 54.2
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 1.2e-09 66.2 54 70.4
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 1.2e-09 66.2 55 63.6
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 1.5e-09 65.9 78 53.8
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 1.5e-09 65.9 67 55.2
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.0e-09 65.5 77 54.5
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 2.0e-09 65.5 77 55.8
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 2.0e-09 65.5 54 66.7
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 2.0e-09 65.5 54 66.7
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 2.6e-09 65.1 67 55.2
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 2.6e-09 65.1 75 53.3
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 2.6e-09 65.1 76 53.9
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 2.6e-09 65.1 74 52.7
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 3.4e-09 64.7 57 66.7
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.4e-09 64.7 75 53.3
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.4e-09 64.7 75 53.3
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.4e-09 64.7 75 53.3
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 3.4e-09 64.7 79 53.2
Oeu012375.1 Olea europaea HOM05D002385 ORTHO05D002245 3.4e-09 64.7 74 54.1
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 3.4e-09 64.7 54 66.7
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 4.5e-09 64.3 64 56.2
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 4.5e-09 64.3 69 58.0
CiPaw.11G059900 Carya illinoinensis HOM05D002385 ORTHO05D002245 5.8e-09 63.9 54 53.7
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 5.8e-09 63.9 77 55.8
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 5.8e-09 63.9 66 57.6
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 5.8e-09 63.9 63 58.7
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 7.6e-09 63.5 68 54.4
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 7.6e-09 63.5 74 51.4
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.0e-08 63.2 77 55.8
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 1.0e-08 63.2 52 61.5
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 1.0e-08 63.2 80 52.5
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.0e-08 63.2 75 54.7
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.0e-08 63.2 63 58.7
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.0e-08 63.2 63 58.7
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 1.3e-08 62.8 72 52.8
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 1.7e-08 62.4 74 50.0
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 2.2e-08 62.0 69 55.1
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.2e-08 62.0 77 55.8
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 2.2e-08 62.0 75 52.0
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.9e-08 61.6 80 51.2
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.9e-08 61.6 77 48.1
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.9e-08 61.6 65 56.9
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 3.8e-08 61.2 67 47.8
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.8e-08 61.2 75 53.3
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 3.8e-08 61.2 60 60.0
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 3.8e-08 61.2 57 57.9
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 3.8e-08 61.2 75 53.3
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 4.9e-08 60.8 58 62.1
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 4.9e-08 60.8 58 62.1
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 4.9e-08 60.8 68 58.8
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.9e-08 60.8 75 53.3
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 4.9e-08 60.8 74 52.7
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 6.5e-08 60.5 52 63.5
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 6.5e-08 60.5 81 51.9
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 8.4e-08 60.1 69 55.1
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 8.4e-08 60.1 52 65.4
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 8.4e-08 60.1 84 48.8
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 8.4e-08 60.1 78 42.3
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 1.1e-07 59.7 53 64.2
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 1.1e-07 59.7 72 54.2
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 1.1e-07 59.7 54 53.7
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 1.1e-07 59.7 63 57.1
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 1.1e-07 59.7 79 50.6
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 1.1e-07 59.7 53 60.4
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 1.1e-07 59.7 62 50.0
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.1e-07 59.7 74 52.7
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 1.4e-07 59.3 74 52.7
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.4e-07 59.3 53 58.5
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 1.4e-07 59.3 64 54.7
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.9e-07 58.9 74 51.4
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 1.9e-07 58.9 53 62.3
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 1.9e-07 58.9 77 53.2
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 1.9e-07 58.9 66 53.0
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 1.9e-07 58.9 74 48.6
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.9e-07 58.9 65 56.9
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 2.5e-07 58.5 52 63.5
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 2.5e-07 58.5 52 63.5
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 2.5e-07 58.5 82 51.2
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 2.5e-07 58.5 67 53.7
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 2.5e-07 58.5 67 56.7
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 2.5e-07 58.5 60 55.0
Sabra15G0137200 Salix brachista HOM05D012689 ORTHO05D002245 2.5e-07 58.5 61 57.4
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 2.5e-07 58.5 66 45.5
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 3.2e-07 58.2 52 53.8
BolC5t29144H Brassica oleracea HOM05D002385 ORTHO05D002245 3.2e-07 58.2 72 43.1
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 3.2e-07 58.2 52 53.8
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 3.2e-07 58.2 77 51.9
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 3.2e-07 58.2 74 52.7
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 3.2e-07 58.2 53 58.5
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 3.2e-07 58.2 79 53.2
CARHR004830 Cardamine hirsuta HOM05D002385 ORTHO05D002245 4.2e-07 57.8 68 50.0
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 4.2e-07 57.8 52 61.5
Eucgr.E01879 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.2e-07 57.8 66 51.5
FvH4_6g39640 Fragaria vesca HOM05D002385 ORTHO05D002245 4.2e-07 57.8 65 53.8
FAN14G3978 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.2e-07 57.8 65 53.8
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 4.2e-07 57.8 73 47.9
BraA10t42676Z Brassica rapa HOM05D002385 ORTHO05D002245 5.5e-07 57.4 72 43.1
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 5.5e-07 57.4 76 50.0
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 5.5e-07 57.4 67 55.2
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 7.1e-07 57.0 72 52.8
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 7.1e-07 57.0 69 52.2
Glyma.08G171300 Glycine max HOM05D002385 ORTHO05D002245 7.1e-07 57.0 60 51.7
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 7.1e-07 57.0 79 51.9
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 9.3e-07 56.6 69 52.2
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 9.3e-07 56.6 64 56.2
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 9.3e-07 56.6 69 52.2
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 9.3e-07 56.6 73 46.6
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 9.3e-07 56.6 52 50.0
C05p03670 Brassica napus HOM05D002385 ORTHO05D002245 1.2e-06 56.2 72 41.7
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 1.2e-06 56.2 89 50.6
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.2e-06 56.2 75 42.7
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 1.2e-06 56.2 63 54.0
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 1.2e-06 56.2 76 43.4
Medtr3g081140 Medicago truncatula HOM05D002385 ORTHO05D002245 1.2e-06 56.2 65 52.3
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 1.2e-06 56.2 48 62.5
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.6e-06 55.8 60 58.3
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 1.6e-06 55.8 64 54.7
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 2.1e-06 55.5 74 45.9
MELO3C012630.2 Cucumis melo HOM05D002385 ORTHO05D002245 2.1e-06 55.5 41 58.5
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.1e-06 55.5 76 47.4
Thhalv10009262m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 2.1e-06 55.5 73 45.2
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 2.1e-06 55.5 74 44.6
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 2.1e-06 55.5 50 62.0
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 2.1e-06 55.5 74 45.9
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 3.5e-06 54.7 54 48.1
CsaV3_7G022690 Cucumis sativus L. HOM05D002385 ORTHO05D002245 3.5e-06 54.7 41 58.5
FAN02G1107 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.5e-06 54.7 62 48.4
FvH4_6g39683 Fragaria vesca HOM05D002385 ORTHO05D002245 4.6e-06 54.3 57 45.6
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.6e-06 54.3 52 55.8
Glyma.08G171000 Glycine max HOM05D002385 ORTHO05D002245 4.6e-06 54.3 61 44.3
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 4.6e-06 54.3 77 46.8
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 4.6e-06 54.3 77 46.8
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 6.0e-06 53.9 77 49.4
FvH4_6g39682 Fragaria vesca HOM05D002385 ORTHO05D002245 6.0e-06 53.9 64 45.3
MD01G1028400 Malus domestica HOM05D002385 ORTHO05D002245 6.0e-06 53.9 50 56.0
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 7.9e-06 53.5 79 43.0
CiPaw.11G059800 Carya illinoinensis HOM05D014462 ORTHO05D018947 7.9e-06 53.5 41 56.1


User provided reference genes

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