Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 5.5e-131 471.1 259 100.0
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 1.3e-116 423.3 259 87.3
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 1.3e-116 423.3 259 87.3
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 5.6e-115 417.9 255 86.7
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 5.2e-113 411.4 257 85.6
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 6.6e-92 341.3 246 72.8
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 1.9e-91 339.7 216 79.2
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 4.3e-91 338.6 237 73.0
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 1.2e-90 337.0 208 80.8
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 6.9e-89 331.3 245 70.6
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 6.9e-89 331.3 245 70.6
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 2.4e-86 322.8 213 78.4
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 2.1e-85 319.7 227 70.9
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 2.7e-85 319.3 225 71.1
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 3.0e-84 315.8 214 72.0
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 4.3e-83 312.0 242 65.3
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 5.6e-83 311.6 243 65.8
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 9.6e-83 310.8 225 68.9
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 9.6e-83 310.8 217 70.0
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 1.6e-82 310.1 230 67.4
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 1.6e-82 310.1 200 78.5
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 2.8e-82 309.3 225 68.9
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 2.8e-82 309.3 221 68.3
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 1.1e-81 307.4 233 67.0
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 1.4e-81 307.0 226 66.8
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 1.4e-81 307.0 239 64.0
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 1.8e-81 306.6 225 68.9
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 4.0e-81 305.4 210 70.5
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 5.3e-81 305.1 217 68.2
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 1.2e-80 303.9 213 70.0
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 1.2e-80 303.9 215 71.6
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 1.2e-80 303.9 228 66.2
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 1.2e-80 303.9 220 68.6
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 1.5e-80 303.5 239 64.0
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 2.6e-80 302.8 225 67.1
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 2.6e-80 302.8 228 66.7
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 2.6e-80 302.8 227 65.2
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 3.4e-80 302.4 225 65.3
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 3.4e-80 302.4 225 67.6
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 3.4e-80 302.4 224 64.7
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 4.5e-80 302.0 241 63.5
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 4.5e-80 302.0 224 64.7
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 4.5e-80 302.0 224 64.7
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 5.8e-80 301.6 233 65.2
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 5.8e-80 301.6 233 64.8
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 7.6e-80 301.2 202 70.8
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 7.6e-80 301.2 209 68.4
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 9.9e-80 300.8 219 67.1
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 9.9e-80 300.8 224 66.5
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 2.2e-79 299.7 219 65.8
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 4.9e-79 298.5 223 64.6
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 6.4e-79 298.1 225 65.8
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 8.4e-79 297.7 223 64.6
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 1.1e-78 297.4 225 65.8
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 1.4e-78 297.0 231 64.9
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.9e-78 296.6 226 64.6
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 1.9e-78 296.6 226 65.5
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 3.2e-78 295.8 231 65.4
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 4.2e-78 295.4 230 66.1
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 5.4e-78 295.0 234 62.8
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 1.2e-77 293.9 227 64.8
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 2.1e-77 293.1 211 67.8
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 2.7e-77 292.7 225 66.7
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 3.5e-77 292.4 215 68.4
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 4.6e-77 292.0 217 65.9
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 7.9e-77 291.2 213 68.5
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 1.8e-76 290.0 202 67.3
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 2.3e-76 289.7 211 67.3
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 2.3e-76 289.7 203 72.4
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 5.1e-76 288.5 211 66.4
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 8.7e-76 287.7 217 66.8
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 1.1e-75 287.3 213 64.3
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.5e-75 287.0 202 70.3
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 1.9e-75 286.6 211 64.9
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 3.3e-75 285.8 217 63.6
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 3.3e-75 285.8 233 63.5
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 3.3e-75 285.8 203 72.4
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 7.4e-75 284.6 206 64.1
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 9.6e-75 284.3 223 64.1
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 9.6e-75 284.3 213 63.8
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 1.3e-74 283.9 227 60.8
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 1.3e-74 283.9 227 61.2
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 1.3e-74 283.9 213 63.8
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 1.6e-74 283.5 213 63.8
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 2.1e-74 283.1 206 67.0
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 2.1e-74 283.1 225 64.4
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 4.8e-74 282.0 210 67.1
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 1.4e-73 280.4 205 64.9
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 2.4e-73 279.6 206 68.0
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 4.0e-73 278.9 222 61.7
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 5.3e-73 278.5 205 67.3
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 1.8e-68 263.5 220 61.8
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 4.3e-67 258.8 217 61.8
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 8.2e-66 254.6 175 70.9
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 6.9e-65 251.5 384 41.1
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 8.7e-60 234.6 225 55.6
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 5.7e-59 231.9 167 67.1
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 1.5e-56 223.8 201 58.2
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 3.4e-56 222.6 199 56.3
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 7.7e-56 221.5 204 57.4
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 1.3e-55 220.7 224 50.0
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 2.1e-53 213.4 190 58.9
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 1.8e-49 200.3 151 68.2
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 1.4e-41 174.1 217 44.2
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 2.7e-37 159.8 117 63.2
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 4.2e-30 136.0 98 67.3
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 4.7e-29 132.5 113 58.4
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 4.0e-28 129.4 100 61.0
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 1.0e-23 114.8 79 75.9
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 7.2e-22 108.6 191 39.3
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 2.0e-08 63.9 153 32.0
Cre01.g043050 Chlamydomonas reinhardtii HOM05D005243 ORTHO05D006670 5.0e-07 59.3 193 28.0


User provided reference genes

Program Settings