Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 2.8e-247 858.2 443 100.0
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 3.3e-224 781.6 447 92.4
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 1.4e-222 776.2 446 92.2
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 3.8e-220 768.1 444 91.2
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 2.1e-215 752.3 441 87.8
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 5.3e-214 747.7 443 87.8
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 9.0e-214 746.9 442 88.5
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 2.4e-211 738.8 442 87.8
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 7.1e-211 737.3 443 86.9
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 1.1e-206 723.4 442 86.4
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 2.0e-205 719.2 441 83.9
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 2.0e-205 719.2 441 83.9
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 3.0e-201 705.3 441 82.1
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.5e-200 703.0 444 81.1
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 4.8e-199 698.0 442 81.2
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 6.2e-199 697.6 445 80.4
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 8.1e-199 697.2 442 81.0
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 8.1e-199 697.2 442 81.7
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.1e-198 696.8 442 81.0
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 1.1e-198 696.8 442 80.1
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.4e-198 696.4 444 81.5
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 3.1e-198 695.3 441 80.5
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 4.0e-198 694.9 440 81.1
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 4.0e-198 694.9 442 81.7
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 6.9e-198 694.1 439 80.6
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.5e-197 693.0 438 80.8
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 2.0e-197 692.6 435 82.1
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 2.6e-197 692.2 442 80.1
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 2.6e-197 692.2 442 80.3
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 5.8e-197 691.0 435 81.6
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 9.9e-197 690.3 400 86.0
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.3e-196 689.9 442 79.6
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 1.7e-196 689.5 438 80.4
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.9e-196 688.7 438 80.4
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 4.9e-196 688.0 442 80.3
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 4.9e-196 688.0 442 79.4
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 1.1e-195 686.8 441 80.3
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.1e-195 686.8 443 81.3
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 1.4e-195 686.4 435 82.1
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.9e-195 686.0 437 80.8
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 3.2e-195 685.3 439 80.4
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 4.2e-195 684.9 442 79.9
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 5.5e-195 684.5 440 79.8
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 7.1e-195 684.1 443 80.6
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 7.1e-195 684.1 439 80.0
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 7.1e-195 684.1 441 79.6
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.2e-194 683.3 442 81.7
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 2.1e-194 682.6 442 80.3
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 4.6e-194 681.4 442 78.3
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 4.6e-194 681.4 444 80.6
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 6.0e-194 681.0 393 87.0
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.8e-193 679.5 441 79.8
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 1.8e-193 679.5 400 85.0
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 3.0e-193 678.7 443 79.9
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 3.0e-193 678.7 442 80.1
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 3.9e-193 678.3 442 80.1
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 3.9e-193 678.3 442 79.6
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 6.7e-193 677.6 441 78.2
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 8.7e-193 677.2 442 79.4
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.5e-192 676.4 442 80.3
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 1.5e-192 676.4 433 79.9
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 1.5e-192 676.4 446 79.8
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 2.5e-192 675.6 441 79.6
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 5.6e-192 674.5 442 80.1
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 5.6e-192 674.5 439 79.0
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 5.6e-192 674.5 391 87.0
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 7.4e-192 674.1 385 86.8
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 7.4e-192 674.1 441 78.9
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 1.3e-191 673.3 444 78.8
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 1.3e-191 673.3 444 80.4
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.6e-191 672.9 442 80.3
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 6.2e-191 671.0 445 80.2
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 8.2e-191 670.6 440 78.9
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 1.4e-190 669.8 434 78.8
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 1.4e-190 669.8 443 78.1
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 3.1e-190 668.7 444 78.6
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 6.9e-190 667.5 409 81.4
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.2e-189 666.8 409 81.4
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 7.6e-189 664.1 430 77.0
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 7.6e-189 664.1 441 76.9
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 8.4e-188 660.6 444 77.5
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 5.5e-187 657.9 442 75.8
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 6.0e-186 654.4 377 86.5
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 2.3e-185 652.5 441 76.4
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 3.9e-185 651.7 441 78.5
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 6.7e-185 651.0 383 85.1
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 1.1e-184 650.2 441 76.4
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.5e-184 649.8 441 76.2
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 2.5e-184 649.0 415 79.0
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 2.5e-184 649.0 440 77.7
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 3.3e-184 648.7 441 75.7
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 3.3e-184 648.7 441 75.7
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 1.6e-183 646.4 393 82.2
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 2.2e-183 646.0 404 80.2
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 4.8e-183 644.8 381 84.0
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 4.8e-183 644.8 404 80.0
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 4.8e-183 644.8 385 82.9
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.4e-182 643.3 440 75.0
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 2.4e-182 642.5 401 80.5
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 2.4e-182 642.5 416 77.9
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 4.1e-182 641.7 416 79.6
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 6.9e-182 641.0 443 74.7
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 1.5e-181 639.8 441 74.8
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 1.3e-180 636.7 372 84.1
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.7e-180 636.3 423 76.8
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.2e-180 636.0 390 83.1
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 3.8e-180 635.2 383 83.3
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 3.8e-180 635.2 383 82.2
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 1.4e-179 633.3 409 77.8
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 1.4e-179 633.3 409 77.8
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.5e-179 632.5 431 75.6
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 4.2e-179 631.7 443 74.9
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 4.2e-179 631.7 443 74.9
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 4.2e-179 631.7 443 74.7
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 9.4e-179 630.6 441 74.8
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 2.8e-175 619.0 484 69.6
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 7.7e-173 610.9 469 68.2
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.0e-172 610.5 439 73.3
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 9.1e-166 587.4 443 71.3
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.2e-165 587.0 381 79.5
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.6e-162 576.6 442 70.4
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 1.8e-161 573.2 363 83.2
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 9.1e-158 560.8 368 79.3
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 4.5e-157 558.5 345 82.3
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 4.2e-155 552.0 376 72.9
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 4.7e-154 548.5 411 67.2
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 8.3e-151 537.7 305 88.9
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 9.1e-150 534.3 399 65.2
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 6.5e-148 528.1 365 69.6
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 3.2e-147 525.8 401 64.6
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 4.7e-146 521.9 375 68.8
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.0e-144 516.5 384 65.9
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 9.8e-144 514.2 413 63.9
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 4.1e-142 508.8 377 66.6
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 7.0e-142 508.1 361 71.2
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.6e-141 506.9 378 64.3
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 4.5e-141 505.4 433 61.7
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 4.5e-141 505.4 429 60.8
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 4.0e-137 492.3 361 67.3
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.5e-136 490.3 394 60.4
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 6.6e-132 474.9 391 59.6
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.9e-131 473.4 320 76.2
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 1.0e-129 467.6 359 63.5
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.7e-116 423.7 365 60.0
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 5.6e-99 365.5 359 54.9
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.2e-93 347.8 302 60.9
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 6.7e-84 315.5 226 71.7
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.6e-69 267.7 328 45.1
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 3.5e-69 266.5 204 72.1
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.4e-60 238.0 157 80.3
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 3.9e-60 236.5 199 59.8
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 2.8e-58 230.3 123 87.0
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 2.6e-56 223.8 160 69.4
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.2e-40 171.8 162 53.1
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 2.2e-39 167.5 119 70.6
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 4.0e-36 156.8 111 75.7
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 5.4e-33 146.4 81 88.9
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 2.5e-30 137.5 80 85.0
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 2.7e-29 134.0 114 58.8
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.3e-26 125.2 80 71.2
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 1.2e-21 108.6 75 66.7
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 2.6e-19 100.9 103 55.3
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.5e-14 84.3 94 50.0
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 3.9e-07 60.5 149 34.2


User provided reference genes

Program Settings