Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G971 Trifolium pratense HOM05D004123 ORTHO05D004768 2.4e-55 218.8 111 100.0
TPR.G18823 Trifolium pratense HOM05D004123 ORTHO05D004768 6.5e-53 210.7 113 89.4
Medtr1g110710 Medicago truncatula HOM05D004123 ORTHO05D004768 5.9e-46 187.6 98 91.8
Psat6g227440 Pisum sativum HOM05D004123 ORTHO05D004768 2.1e-43 179.1 99 90.9
Lj2g0014688 Lotus japonicus HOM05D004123 ORTHO05D004768 6.8e-34 147.5 99 73.7
Phvul.007G027700 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 9.8e-33 143.7 98 78.6
Glyma.10G273800 Glycine max HOM05D004123 ORTHO05D004768 1.3e-32 143.3 98 78.6
Phvul.003G031000 Phaseolus vulgaris HOM05D004123 ORTHO05D004768 6.3e-32 141.0 94 75.5
CiPaw.15G085900 Carya illinoinensis HOM05D004123 ORTHO05D004768 2.4e-31 139.0 98 74.5
Glyma.20G116200 Glycine max HOM05D004123 ORTHO05D004768 2.4e-31 139.0 98 77.6
Lalb_Chr21g0308891 Lupinus albus HOM05D004123 ORTHO05D004768 7.0e-31 137.5 99 75.8
Lj5g0020149 Lotus japonicus HOM05D004123 ORTHO05D004768 3.5e-30 135.2 107 75.7
Lalb_Chr10g0100051 Lupinus albus HOM05D004123 ORTHO05D004768 3.5e-30 135.2 102 66.7
QL01p041642 Quercus lobata HOM05D004123 ORTHO05D004768 7.8e-30 134.0 99 73.7
Prupe.1G311900 Prunus persica HOM05D004123 ORTHO05D004768 3.8e-29 131.7 102 72.5
CsaV3_5G023110 Cucumis sativus L. HOM05D004123 ORTHO05D004768 1.9e-28 129.4 101 72.3
VMungo1215G3079 Vigna mungo HOM05D004123 ORTHO05D004768 3.3e-28 128.6 96 69.8
MELO3C003021.2 Cucumis melo HOM05D004123 ORTHO05D004768 7.3e-28 127.5 101 70.3
Lj5g0023256 Lotus japonicus HOM05D004123 ORTHO05D004768 9.5e-28 127.1 102 66.7
CiPaw.16G065300 Carya illinoinensis HOM05D004123 ORTHO05D004768 8.0e-27 124.0 101 68.3
Sed0004295 Sechium edule HOM05D004123 ORTHO05D004768 8.0e-27 124.0 97 71.1
FvH4_4g27300 Fragaria vesca HOM05D004123 ORTHO05D004768 1.0e-26 123.6 101 72.3
Sed0009095 Sechium edule HOM05D004123 ORTHO05D004768 1.8e-26 122.9 100 72.0
Gohir.A04G098200 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.0e-26 121.7 101 68.3
Gohir.D04G137875 Gossypium hirsutum HOM05D004123 ORTHO05D004768 4.0e-26 121.7 101 68.3
Gorai.012G122600 Gossypium raimondii HOM05D004123 ORTHO05D004768 4.0e-26 121.7 101 68.3
MD13G1040900 Malus domestica HOM05D004123 ORTHO05D004768 6.8e-26 120.9 104 68.3
Thecc.02G229500 Theobroma cacao HOM05D004123 ORTHO05D004768 8.9e-26 120.6 101 67.3
GSVIVG01011890001 Vitis vinifera HOM05D004123 ORTHO05D004768 1.2e-25 120.2 101 67.3
Ciclev10018307m.g Citrus clementina HOM05D004123 ORTHO05D004768 1.5e-25 119.8 98 65.3
Rhsim09G0107600 Rhododendron simsii HOM05D004123 ORTHO05D004768 5.8e-25 117.9 87 69.0
Ca_03055_v3 Cicer arietinum L. HOM05D004123 ORTHO05D004768 7.5e-25 117.5 74 86.5
Solyc05g009380.4 Solanum lycopersicum HOM05D004123 ORTHO05D004768 7.5e-25 117.5 88 70.5
Duzib248G0829 Durio zibethinus HOM05D004123 ORTHO05D004768 9.8e-25 117.1 100 67.0
Gohir.A03G147300 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.3e-24 116.7 101 63.4
Gohir.D02G170500 Gossypium hirsutum HOM05D004123 ORTHO05D004768 1.3e-24 116.7 101 63.4
Gorai.005G191500 Gossypium raimondii HOM05D004123 ORTHO05D004768 1.3e-24 116.7 101 63.4
MD16G1042200 Malus domestica HOM05D004123 ORTHO05D004768 1.3e-24 116.7 102 67.6
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 1.7e-24 116.3 106 61.3
CANSAT01G1980 Cannabis sativa HOM05D004123 ORTHO05D004768 2.9e-24 115.5 103 68.0
Haze_17490 Corylus avellana HOM05D004123 ORTHO05D004768 2.9e-24 115.5 110 62.7
Duzib268G1624 Durio zibethinus HOM05D004123 ORTHO05D004768 2.9e-24 115.5 101 63.4
Aqoxy3G00286 Aquilegia oxysepala HOM05D004123 ORTHO05D004768 4.9e-24 114.8 106 60.4
Eucgr.G02316 Eucalyptus grandis HOM05D004123 ORTHO05D004768 4.9e-24 114.8 94 64.9
TAR374G0469 Trochodendron aralioides HOM05D004123 ORTHO05D004768 6.4e-24 114.4 107 62.6
CAN.G610.78 Capsicum annuum HOM05D004123 ORTHO05D004768 8.3e-24 114.0 90 67.8
Duzib251G0145 Durio zibethinus HOM05D004123 ORTHO05D004768 1.1e-23 113.6 101 65.3
MSTRG.844 Avicennia marina HOM05D004123 ORTHO05D004768 1.9e-23 112.8 87 67.8
Potri.008G121200 Populus trichocarpa HOM05D004123 ORTHO05D004768 2.4e-23 112.5 99 65.7
vmacro10561 Vaccinium macrocarpon HOM05D004123 ORTHO05D004768 5.4e-23 111.3 101 64.4
Nn3g17856 Nelumbo nucifera HOM05D004123 ORTHO05D004768 7.0e-23 110.9 104 62.5
TAR622G0492 Trochodendron aralioides HOM05D004123 ORTHO05D004768 7.0e-23 110.9 115 58.3
Cc11_g10070 Coffea canephora HOM05D004123 ORTHO05D004768 1.2e-22 110.2 99 61.6
Actinidia14896 Actinidia chinensis HOM05D004123 ORTHO05D004768 2.7e-22 109.0 101 63.4
MSTRG.13535 Avicennia marina HOM05D004123 ORTHO05D004768 2.7e-22 109.0 99 65.7
Nn4g23857 Nelumbo nucifera HOM05D004123 ORTHO05D004768 2.7e-22 109.0 111 61.3
FAN07G2244 Fragaria x ananassa HOM05D004123 ORTHO05D004768 4.6e-22 108.2 130 56.2
Manes.14G103000 Manihot esculenta HOM05D004123 ORTHO05D004768 6.0e-22 107.8 98 64.3
Cpa.g.sc350.1 Carica papaya HOM05D004123 ORTHO05D004768 1.0e-21 107.1 100 63.0
FAN12G0145 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.0e-21 107.1 129 55.8
FAN12G0921 Fragaria x ananassa HOM05D004123 ORTHO05D004768 1.0e-21 107.1 129 55.8
Manes.06G067400 Manihot esculenta HOM05D004123 ORTHO05D004768 1.7e-21 106.3 98 64.3
FAN22G2099 Fragaria x ananassa HOM05D004123 ORTHO05D004768 2.3e-21 105.9 130 55.4
Lj6C757T7 Lonicera japonica HOM05D004123 ORTHO05D004768 6.6e-21 104.4 102 61.8
Oeu034240.1 Olea europaea HOM05D004123 ORTHO05D004768 6.6e-21 104.4 101 61.4
Oeu043592.1 Olea europaea HOM05D004123 ORTHO05D004768 8.6e-21 104.0 101 61.4
Lsat_1_v5_gn_8_40481 Lactuca sativa HOM05D004123 ORTHO05D004768 1.9e-20 102.8 99 61.6
PGR119G1213 Punica granatum HOM05D004123 ORTHO05D004768 5.6e-20 101.3 102 54.9
HanXRQChr09g0252701 Helianthus annuus HOM05D004123 ORTHO05D004768 7.3e-20 100.9 99 62.6
SHI16201 Sapria himalayana HOM05D004123 ORTHO05D004768 9.5e-20 100.5 96 57.3
TWI31G0276 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 9.5e-20 100.5 98 61.2
CARHR061260 Cardamine hirsuta HOM05D004123 ORTHO05D004768 1.2e-19 100.1 100 58.0
Carub.0002s1499 Capsella rubella HOM05D004123 ORTHO05D004768 3.6e-19 98.6 100 58.0
TWI75G1885 Tripterygium wilfordii HOM05D004123 ORTHO05D004768 4.7e-19 98.2 89 60.7
AT1G68480 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 6.2e-19 97.8 100 57.0
Sabra08G0091900 Salix brachista HOM05D004123 ORTHO05D004768 6.2e-19 97.8 121 51.2
ATR1125G037 Amborella trichopoda HOM05D004123 ORTHO05D004768 1.1e-18 97.1 59 76.3
AL2G27340 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 1.1e-18 97.1 100 57.0
DCAR_026735 Daucus carota HOM05D004123 ORTHO05D004768 1.1e-18 97.1 100 58.0
Thhalv10019033m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 1.1e-18 97.1 84 63.1
Sp5g23550 Schrenkiella parvula HOM05D004123 ORTHO05D004768 1.1e-18 97.1 100 56.0
Ah.03g137600 Amaranthus hybridus HOM05D004123 ORTHO05D004768 1.8e-18 96.3 79 64.6
Os01g0129200 Oryza sativa ssp. japonica HOM05D004123 ORTHO05D004768 4.0e-18 95.1 46 95.7
BcaC08g46276 Brassica carinata HOM05D004123 ORTHO05D004768 5.2e-18 94.7 100 56.0
C06p41480 Brassica napus HOM05D004123 ORTHO05D004768 5.2e-18 94.7 100 56.0
BolC6t39275H Brassica oleracea HOM05D004123 ORTHO05D004768 5.2e-18 94.7 100 56.0
BcaB05g24386 Brassica carinata HOM05D004123 ORTHO05D004768 6.8e-18 94.4 73 71.2
HanXRQChr08g0213911 Helianthus annuus HOM05D004123 ORTHO05D004768 6.8e-18 94.4 54 87.0
Psat6g226920 Pisum sativum HOM05D004123 ORTHO05D004768 6.8e-18 94.4 98 54.1
unitig_22.g6557 Utricularia gibba HOM05D004123 ORTHO05D004768 6.8e-18 94.4 81 64.2
BcaB03g15826 Brassica carinata HOM05D004123 ORTHO05D004768 1.2e-17 93.6 100 56.0
A07p34880 Brassica napus HOM05D004123 ORTHO05D004768 1.2e-17 93.6 100 56.0
THA.LOC104821930 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 1.2e-17 93.6 98 54.1
unitig_747.g21201 Utricularia gibba HOM05D004123 ORTHO05D004768 1.2e-17 93.6 74 68.9
Lsat_1_v5_gn_3_59041 Lactuca sativa HOM05D004123 ORTHO05D004768 1.5e-17 93.2 46 93.5
PSO063G6205 Papaver somniferum HOM05D004123 ORTHO05D004768 1.5e-17 93.2 46 93.5
PSO782G4509 Papaver somniferum HOM05D004123 ORTHO05D004768 1.5e-17 93.2 46 93.5
SalBow8G0349 Salvia bowleyana HOM05D004123 ORTHO05D004768 1.5e-17 93.2 51 90.2
unitig_8.g3254 Utricularia gibba HOM05D004123 ORTHO05D004768 1.5e-17 93.2 51 90.2
A02p15050 Brassica napus HOM05D004123 ORTHO05D004768 3.4e-17 92.0 52 86.5
C02p24750 Brassica napus HOM05D004123 ORTHO05D004768 3.4e-17 92.0 52 86.5
BolC2t08567H Brassica oleracea HOM05D004123 ORTHO05D004768 3.4e-17 92.0 52 86.5
Migut.E00347 Erythranthe guttata HOM05D004123 ORTHO05D004768 3.4e-17 92.0 93 58.1
CDE12G0443 Ceratophyllum demersum HOM05D004123 ORTHO05D004768 4.4e-17 91.7 95 54.7
THA.LOC104805254 Tarenaya hassleriana HOM05D004123 ORTHO05D004768 7.5e-17 90.9 95 57.9
Aa31LG1G1560 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.3e-16 90.1 46 89.1
Carub.0001s1311 Capsella rubella HOM05D004123 ORTHO05D004768 1.3e-16 90.1 98 54.1
Lsat_1_v5_gn_8_41281 Lactuca sativa HOM05D004123 ORTHO05D004768 2.2e-16 89.4 53 84.9
CARHR013770 Cardamine hirsuta HOM05D004123 ORTHO05D004768 2.9e-16 89.0 98 54.1
Sc04g0006360 Simmondsia chinensis HOM05D004123 ORTHO05D004768 2.9e-16 89.0 45 88.9
Zm00001eb335100 Zea mays HOM05D004123 ORTHO05D004768 3.7e-16 88.6 96 52.1
AT1G13400 Arabidopsis thaliana HOM05D004123 ORTHO05D004768 6.4e-16 87.8 104 56.7
ClCG03G009600 Citrullus lanatus HOM05D004123 ORTHO05D004768 1.1e-15 87.0 101 56.4
AL1G25160 Arabidopsis lyrata HOM05D004123 ORTHO05D004768 2.4e-15 85.9 46 87.0
Sp1g11890 Schrenkiella parvula HOM05D004123 ORTHO05D004768 2.4e-15 85.9 97 54.6
HPP92_004806 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.2e-14 83.6 45 86.7
HPP92_004807 Vanilla planifolia HOM05D004123 ORTHO05D004768 1.2e-14 83.6 45 86.7
Lalb_Chr02g0145931 Lupinus albus HOM05D004123 ORTHO05D004768 2.1e-14 82.8 76 65.8
Thhalv10009343m.g Eutrema salsugineum HOM05D004123 ORTHO05D004768 4.6e-14 81.6 98 53.1
Cfa018590 Carpinus fangiana HOM05D004123 ORTHO05D004768 7.8e-14 80.9 75 62.7
VMungo0720G2589 Vigna mungo HOM05D004123 ORTHO05D004768 5.6e-12 74.7 69 66.7
BcaB03g13142 Brassica carinata HOM05D004123 ORTHO05D004768 7.3e-12 74.3 100 50.0
Aa31sc366G10 Aethionema arabicum HOM05D004123 ORTHO05D004768 1.6e-11 73.2 118 44.9
C08p16160 Brassica napus HOM05D004123 ORTHO05D004768 1.6e-11 73.2 104 48.1
BcaC05g25048 Brassica carinata HOM05D004123 ORTHO05D004768 2.1e-11 72.8 61 63.9
RcHm_v2.0_Chr4g0435091 Rosa chinensis HOM05D004123 ORTHO05D004768 2.1e-11 72.8 79 64.6
SMO266G0088 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.1e-11 72.8 43 76.7
SMO288G0011 Selaginella moellendorffii HOM05D004123 ORTHO05D004768 2.1e-11 72.8 43 76.7
A08p32310 Brassica napus HOM05D004123 ORTHO05D004768 6.2e-11 71.2 101 47.5
BraA08t35155Z Brassica rapa HOM05D004123 ORTHO05D004768 6.2e-11 71.2 101 47.5
BolC8t49237H Brassica oleracea HOM05D004123 ORTHO05D004768 1.1e-10 70.5 107 46.7
Pp3c20_10790 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.1e-10 70.5 51 62.7
Potri.010G124200 Populus trichocarpa HOM05D004123 ORTHO05D004768 1.5e-09 66.6 75 56.0
Sabra10G0094200 Salix brachista HOM05D004123 ORTHO05D004768 1.5e-09 66.6 37 78.4
Pp3c23_800 Physcomitrium patens HOM05D059517 ORTHO05D004768 2.6e-09 65.9 54 61.1
Sopen05g005180 Solanum pennellii HOM05D004123 ORTHO05D004768 2.6e-09 65.9 65 60.0
CSS0039482 Camellia sinensis var. sinensis HOM05D004123 ORTHO05D004768 3.4e-09 65.5 29 96.6
AagrBONN_evm.TU.Sc2ySwM_228.1523 Anthoceros agrestis HOM05D004123 ORTHO05D004768 4.4e-09 65.1 51 62.7
arahy.Tifrunner.gnm1.ann1.A2D7P4 Arachis hypogaea HOM05D004123 ORTHO05D004768 5.8e-09 64.7 70 57.1
arahy.Tifrunner.gnm1.ann1.U1U6XH Arachis hypogaea HOM05D004123 ORTHO05D004768 9.9e-09 63.9 67 58.2
Medtr1g110740 Medicago truncatula HOM05D004123 ORTHO05D004768 1.3e-08 63.5 70 57.1
Pp3c3_21050 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.7e-08 63.2 58 55.2
Pp3c23_2190 Physcomitrium patens HOM05D004123 ORTHO05D004768 2.9e-08 62.4 44 63.6
Pp3c23_960 Physcomitrium patens HOM05D004123 ORTHO05D004768 1.1e-07 60.5 39 69.2
Nitab4.5_0003373g0030 Nicotiana tabacum HOM05D004123 ORTHO05D004768 3.2e-07 58.9 77 51.9
Lj5g0023512 Lotus japonicus HOM05D001250 ORTHO05D000627 6.0e-06 54.7 92 35.9


User provided reference genes

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