Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 4.2e-178 627.9 307 100.0
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 1.4e-59 234.2 398 39.2
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 4.4e-58 229.2 423 38.1
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 2.2e-57 226.9 325 43.4
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 2.8e-57 226.5 398 37.4
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 3.1e-56 223.0 373 40.5
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 6.9e-56 221.9 373 39.4
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 4.5e-55 219.2 420 36.2
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 5.0e-54 215.7 196 54.1
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 4.2e-53 212.6 196 52.6
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 1.8e-51 207.2 197 52.3
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 6.7e-51 205.3 193 51.3
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.1e-50 204.5 194 52.1
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 2.6e-50 203.4 199 51.8
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 5.7e-50 202.2 197 50.8
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 4.8e-49 199.1 230 44.3
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 8.2e-49 198.4 196 50.5
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 8.2e-49 198.4 194 52.1
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 1.4e-48 197.6 193 50.8
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 1.4e-48 197.6 193 48.7
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 1.8e-48 197.2 231 45.9
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 1.8e-48 197.2 188 49.5
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.4e-48 196.8 196 48.5
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 2.4e-48 196.8 195 49.2
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 2.4e-48 196.8 192 49.0
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 2.4e-48 196.8 195 48.2
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 3.1e-48 196.4 243 42.4
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 3.1e-48 196.4 188 48.9
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 3.1e-48 196.4 188 52.7
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 4.1e-48 196.1 201 48.3
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 9.1e-48 194.9 194 49.5
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 9.1e-48 194.9 192 49.5
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.2e-47 194.5 197 49.2
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 1.2e-47 194.5 191 48.2
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 1.2e-47 194.5 196 47.4
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 1.2e-47 194.5 191 47.6
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 2.0e-47 193.7 210 44.3
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 3.5e-47 193.0 192 48.4
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 3.5e-47 193.0 193 48.7
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 4.5e-47 192.6 193 47.7
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 4.5e-47 192.6 192 50.0
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 5.9e-47 192.2 205 44.9
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 7.7e-47 191.8 189 48.7
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 1.0e-46 191.4 191 47.1
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 1.0e-46 191.4 198 47.5
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 1.0e-46 191.4 194 47.4
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 1.3e-46 191.0 194 49.5
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 1.3e-46 191.0 188 49.5
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.3e-46 191.0 188 49.5
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 1.7e-46 190.7 196 48.0
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 2.2e-46 190.3 198 47.5
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 2.9e-46 189.9 188 50.0
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 2.9e-46 189.9 201 47.3
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 2.9e-46 189.9 193 49.2
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 2.9e-46 189.9 200 50.0
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 3.8e-46 189.5 192 47.9
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 3.8e-46 189.5 192 47.9
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 3.8e-46 189.5 196 50.5
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 5.0e-46 189.1 194 45.4
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 6.5e-46 188.7 201 47.3
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 6.5e-46 188.7 192 47.9
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 6.5e-46 188.7 193 46.6
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 8.5e-46 188.3 192 48.4
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 1.1e-45 188.0 192 46.9
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 1.9e-45 187.2 188 50.0
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 2.5e-45 186.8 192 51.0
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 3.2e-45 186.4 192 46.9
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 3.2e-45 186.4 203 45.3
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 3.2e-45 186.4 189 48.1
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 5.5e-45 185.7 188 48.4
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 5.5e-45 185.7 186 48.4
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 5.5e-45 185.7 192 46.9
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 9.4e-45 184.9 183 51.9
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 9.4e-45 184.9 195 46.2
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 1.2e-44 184.5 192 46.9
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 2.1e-44 183.7 188 47.3
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 2.1e-44 183.7 193 46.1
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 2.7e-44 183.3 186 47.8
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 3.6e-44 183.0 241 41.9
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 3.6e-44 183.0 207 44.4
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 3.6e-44 183.0 189 47.6
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 3.6e-44 183.0 186 47.3
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 3.6e-44 183.0 188 47.9
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 6.1e-44 182.2 193 45.6
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 6.1e-44 182.2 189 47.1
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 8.0e-44 181.8 186 46.8
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 8.0e-44 181.8 186 46.8
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 1.0e-43 181.4 192 46.9
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 1.0e-43 181.4 193 46.1
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 1.8e-43 180.6 189 46.6
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 3.0e-43 179.9 222 43.7
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 4.0e-43 179.5 190 45.8
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 6.7e-43 178.7 192 43.8
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 6.7e-43 178.7 192 44.8
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 1.2e-42 177.9 208 44.2
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 2.0e-42 177.2 189 45.0
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 2.0e-42 177.2 188 46.3
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 3.3e-42 176.4 194 44.8
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 4.4e-42 176.0 175 48.6
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 9.7e-42 174.9 168 51.2
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 2.8e-41 173.3 385 30.4
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 3.7e-41 172.9 168 50.6
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 1.4e-40 171.0 193 44.6
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 3.1e-40 169.9 193 43.5
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 5.3e-40 169.1 235 39.6
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 1.2e-39 167.9 186 43.5
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 1.6e-39 167.5 188 44.7
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 8.5e-38 161.8 166 47.6
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 1.1e-37 161.4 191 41.4
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.5e-37 160.2 159 50.9
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 4.2e-37 159.5 210 40.5
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 4.2e-37 159.5 181 43.1
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 9.4e-37 158.3 196 43.9
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 1.2e-36 157.9 266 35.0
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 2.1e-36 157.1 164 48.8
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 2.7e-36 156.8 258 36.4
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 4.7e-36 156.0 154 51.9
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 6.1e-36 155.6 189 43.4
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 6.1e-36 155.6 228 39.0
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 8.8e-35 151.8 161 47.8
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 2.6e-34 150.2 167 44.9
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.5e-34 148.7 191 39.8
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.5e-34 148.7 191 39.8
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 1.8e-32 144.1 263 34.2
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.8e-32 144.1 183 40.4
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 7.0e-32 142.1 152 46.7
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 1.3e-30 137.9 129 50.4
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.3e-30 137.9 188 38.3
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.7e-30 137.5 197 38.6
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 8.5e-30 135.2 188 38.8
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 3.2e-29 133.3 140 47.1
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 2.1e-28 130.6 181 36.5
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 3.8e-22 109.8 187 34.2
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 1.2e-18 98.2 98 54.1
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 1.7e-17 94.4 94 50.0
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 2.2e-17 94.0 124 40.3
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 3.7e-17 93.2 118 41.5
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 6.4e-17 92.4 187 29.9
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 1.4e-16 91.3 184 32.6
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 1.6e-15 87.8 94 46.8
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 2.7e-15 87.0 90 47.8
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 2.6e-10 70.5 86 37.2
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 6.4e-09 65.9 105 42.9


User provided reference genes

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