Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 4.9e-199 697.6 347 100.0
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 2.0e-184 649.0 348 93.1
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.2e-178 629.8 349 91.4
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 6.9e-177 624.0 348 89.1
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 5.4e-174 614.4 347 85.9
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 4.6e-173 611.3 349 84.0
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 1.2e-165 586.6 348 81.6
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 1.2e-160 570.1 348 79.6
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 1.1e-153 547.0 347 77.2
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 2.0e-152 542.7 347 77.5
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 5.8e-152 541.2 347 76.9
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 3.8e-151 538.5 347 75.2
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.2e-149 533.5 347 75.8
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 1.3e-148 530.0 348 75.0
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 1.8e-148 529.6 351 74.6
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 3.0e-148 528.9 347 73.5
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 2.5e-147 525.8 348 74.4
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 3.3e-147 525.4 347 74.1
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 4.3e-147 525.0 348 75.0
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 1.8e-145 519.6 349 74.5
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 3.1e-145 518.8 347 73.2
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.9e-145 517.7 345 73.6
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 9.0e-145 517.3 350 74.3
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 9.0e-145 517.3 347 72.6
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.2e-144 516.9 345 73.9
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 5.9e-144 514.6 347 72.6
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.9e-143 512.3 347 72.0
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-142 510.0 361 70.9
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 4.2e-142 508.4 348 72.4
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 1.6e-141 506.5 347 72.3
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 4.6e-141 505.0 347 72.0
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.1e-141 504.6 347 71.2
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 1.0e-140 503.8 348 72.7
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 3.0e-140 502.3 347 71.5
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 8.8e-140 500.7 347 70.9
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 8.8e-140 500.7 347 71.2
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.5e-139 499.2 342 72.8
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 7.4e-139 497.7 342 72.5
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 7.4e-139 497.7 340 72.9
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 3.7e-138 495.4 342 70.8
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 1.1e-137 493.8 347 68.0
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 1.8e-137 493.0 347 69.5
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 1.2e-136 490.3 345 69.3
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 2.0e-136 489.6 291 83.5
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 7.7e-136 487.6 347 69.7
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 3.8e-135 485.3 346 67.9
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.4e-134 483.4 347 68.3
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 1.9e-134 483.0 347 69.2
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 9.4e-134 480.7 350 68.6
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 9.4e-134 480.7 447 58.8
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 2.1e-133 479.6 346 67.6
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 6.1e-133 478.0 347 69.5
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 7.9e-133 477.6 347 68.6
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.3e-132 476.1 349 68.8
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 3.9e-132 475.3 347 68.6
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 5.1e-132 474.9 347 68.6
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 6.7e-132 474.6 347 70.6
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 6.7e-132 474.6 348 68.1
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 8.8e-132 474.2 342 69.9
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 8.8e-132 474.2 345 68.4
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 7.4e-131 471.1 342 70.2
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 9.7e-131 470.7 346 66.2
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.3e-130 470.3 347 68.0
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.3e-130 470.3 349 66.2
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.8e-130 469.2 347 67.4
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 1.1e-129 467.2 347 68.6
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 1.1e-129 467.2 349 65.9
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 1.1e-129 467.2 347 68.3
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 1.8e-129 466.5 347 66.9
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 2.4e-129 466.1 342 69.0
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 7.0e-129 464.5 347 66.6
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 9.1e-129 464.2 347 67.1
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 9.1e-129 464.2 346 68.2
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.2e-128 463.8 347 68.0
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 2.0e-128 463.0 328 68.0
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 3.5e-128 462.2 345 68.4
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 5.9e-128 461.5 346 66.2
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 5.9e-128 461.5 350 66.3
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 7.7e-128 461.1 347 68.0
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 1.7e-127 459.9 347 67.4
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 1.7e-127 459.9 368 63.3
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.7e-127 459.9 347 66.9
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 2.9e-127 459.1 348 67.0
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 3.8e-127 458.8 346 65.6
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 3.8e-127 458.8 342 67.3
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 6.5e-127 458.0 347 65.1
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 6.5e-127 458.0 347 67.4
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 1.9e-126 456.4 347 65.4
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 2.5e-126 456.1 348 67.2
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 3.2e-126 455.7 348 65.5
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 4.2e-126 455.3 346 64.7
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 7.2e-126 454.5 342 65.8
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 7.2e-126 454.5 348 66.7
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 9.4e-126 454.1 348 66.4
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 1.6e-125 453.4 349 65.9
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 2.1e-125 453.0 351 64.1
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 2.7e-125 452.6 343 65.9
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.0e-123 446.4 343 62.4
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 4.4e-123 445.3 349 64.5
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 7.4e-123 444.5 308 72.4
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.3e-122 443.7 343 64.1
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 1.7e-122 443.4 349 64.2
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 2.2e-122 443.0 348 62.1
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 2.8e-122 442.6 352 64.2
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 2.8e-122 442.6 347 62.2
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 1.8e-121 439.9 348 62.9
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 3.1e-121 439.1 348 64.1
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 7.0e-121 438.0 347 63.4
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 1.6e-120 436.8 353 60.6
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.9e-119 432.6 353 61.8
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 6.5e-119 431.4 347 65.1
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 4.2e-118 428.7 348 59.8
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.7e-117 426.0 341 60.1
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 1.4e-116 423.7 357 59.7
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 4.0e-116 422.2 347 61.1
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 5.2e-116 421.8 349 62.8
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 2.6e-115 419.5 349 61.9
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.4e-115 419.1 342 59.6
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 5.7e-115 418.3 358 58.4
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 9.7e-115 417.5 305 69.5
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.1e-113 414.1 352 61.4
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 2.4e-113 412.9 367 58.6
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 9.1e-113 411.0 293 71.7
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 3.5e-112 409.1 346 56.9
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 5.9e-112 408.3 272 73.2
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.1e-110 404.1 351 60.1
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.5e-110 403.7 343 58.6
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.5e-110 403.7 341 58.4
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.4e-108 397.1 298 68.1
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 5.2e-108 395.2 349 58.7
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 5.4e-105 385.2 246 77.2
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 5.9e-104 381.7 431 51.5
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 3.8e-103 379.0 344 55.5
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 5.0e-103 378.6 301 63.1
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 6.3e-98 361.7 358 55.3
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 5.4e-97 358.6 316 58.5
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 2.7e-96 356.3 338 51.5
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 3.7e-90 335.9 247 70.9
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 1.4e-89 334.0 290 58.6
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 1.6e-88 330.5 245 68.2
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 2.7e-88 329.7 244 69.7
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 2.3e-87 326.6 285 58.9
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.5e-86 323.9 240 69.6
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 4.3e-86 322.4 341 46.9
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 2.8e-85 319.7 300 59.0
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 1.2e-83 314.3 225 73.3
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 2.2e-82 310.1 187 79.1
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 3.2e-81 306.2 280 56.8
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 4.6e-80 302.4 341 45.7
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 4.6e-80 302.4 145 100.0
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.1e-78 297.7 348 49.1
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 2.1e-77 293.5 340 41.5
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 1.8e-76 290.4 245 61.6
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 5.2e-76 288.9 280 53.6
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 4.9e-74 282.3 275 51.3
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 1.4e-73 280.8 339 42.5
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 7.1e-73 278.5 246 58.9
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 3.5e-72 276.2 245 60.4
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 2.4e-68 263.5 339 44.8
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.3e-63 246.9 290 45.5
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 5.1e-63 245.7 272 50.4
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.9e-55 219.5 130 78.5
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.4e-52 210.3 140 72.1
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 1.1e-46 191.4 105 81.9
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.8e-42 176.4 131 67.9
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.0e-40 169.1 128 66.4
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 3.1e-36 156.8 120 70.8
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 1.5e-35 154.5 124 62.1
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 5.5e-25 119.4 75 74.7
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 3.9e-23 113.2 347 25.6
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 1.2e-19 101.7 149 31.5
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.2e-18 97.4 57 77.2
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 7.9e-16 89.0 54 63.0
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 5.7e-14 82.8 140 39.3
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 5.0e-10 69.7 82 56.1
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 5.5e-09 66.2 45 66.7
HanXRQChr02g0053871 Helianthus annuus HOM05D004071 ORTHO05D004501 6.1e-08 62.8 101 39.6
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 1.5e-06 58.2 142 31.7


User provided reference genes

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