Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 3.9e-172 608.2 351 100.0
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 2.6e-147 525.8 353 82.7
Ca_20731_v3 Cicer arietinum L. HOM05D005714 ORTHO05D006812 4.3e-134 481.9 352 78.4
Lalb_Chr21g0317991 Lupinus albus HOM05D005714 ORTHO05D006812 2.1e-120 436.4 353 71.1
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 1.9e-110 403.3 352 66.8
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 9.6e-110 401.0 351 71.8
arahy.Tifrunner.gnm1.ann1.R8VTVZ Arachis hypogaea HOM05D005714 ORTHO05D006812 7.6e-107 391.3 373 67.6
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 9.6e-102 374.4 355 62.0
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 6.2e-101 371.7 354 61.0
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 6.2e-101 371.7 356 61.8
Lj2g0024465 Lotus japonicus HOM05D005714 ORTHO05D006812 7.6e-99 364.8 341 62.2
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 9.9e-99 364.4 355 61.4
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 1.3e-98 364.0 355 62.0
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 4.9e-98 362.1 355 62.0
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 1.4e-97 360.5 355 61.7
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 7.1e-97 358.2 355 61.7
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 1.0e-95 354.4 355 60.8
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 5.1e-95 352.1 352 59.9
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 6.6e-95 351.7 354 61.3
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 1.9e-94 350.1 353 60.1
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 7.3e-94 348.2 352 58.5
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 9.6e-94 347.8 355 59.4
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.3e-93 347.4 358 59.8
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 1.3e-93 347.4 353 59.2
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 1.3e-93 347.4 352 59.4
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 1.6e-93 347.1 358 59.8
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 1.6e-93 347.1 354 59.6
Oeu032870.1 Olea europaea HOM05D005714 ORTHO05D006812 2.8e-93 346.3 356 59.3
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 4.8e-93 345.5 233 85.0
MSTRG.2945 Avicennia marina HOM05D005714 ORTHO05D006812 6.2e-93 345.1 356 58.7
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 1.1e-92 344.4 356 58.7
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 1.1e-92 344.4 354 57.9
Migut.H00540 Erythranthe guttata HOM05D005714 ORTHO05D006812 3.1e-92 342.8 358 58.9
Sed0016830 Sechium edule HOM05D005714 ORTHO05D006812 3.1e-92 342.8 356 59.3
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 4.0e-92 342.4 354 59.6
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 6.9e-92 341.7 354 57.3
CsaV3_3G020470 Cucumis sativus L. HOM05D005714 ORTHO05D006812 3.4e-91 339.3 354 58.5
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 3.4e-91 339.3 351 58.1
Sc10g0001430 Simmondsia chinensis HOM05D005714 ORTHO05D006812 9.9e-91 337.8 353 58.6
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.3e-90 337.4 353 60.3
Cc07_g04960 Coffea canephora HOM05D005714 ORTHO05D006812 2.2e-90 336.7 355 58.0
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 3.8e-90 335.9 352 59.1
MELO3C023776.2 Cucumis melo HOM05D005714 ORTHO05D006812 4.9e-90 335.5 361 56.5
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 4.2e-89 332.4 355 57.7
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 4.2e-89 332.4 354 57.1
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 7.1e-89 331.6 354 58.5
EL10Ac2g04627 Beta vulgaris HOM05D005714 ORTHO05D006812 9.3e-89 331.3 355 56.9
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 9.3e-89 331.3 354 61.6
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.2e-88 330.9 352 58.0
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 7.9e-88 328.2 353 58.1
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 1.8e-87 327.0 353 58.1
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 2.3e-87 326.6 353 57.5
ClCG05G011990 Citrullus lanatus HOM05D005714 ORTHO05D006812 2.3e-87 326.6 369 56.1
Rhsim10G0064900 Rhododendron simsii HOM05D005714 ORTHO05D006812 3.0e-87 326.2 366 56.8
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 3.9e-87 325.9 354 57.6
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 3.9e-87 325.9 353 57.2
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 3.3e-86 322.8 352 57.4
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 4.3e-86 322.4 352 56.5
SalBow1G3421 Salvia bowleyana HOM05D005714 ORTHO05D006812 5.6e-86 322.0 358 55.6
SalBow1G2935 Salvia bowleyana HOM05D005714 ORTHO05D006812 7.4e-86 321.6 358 55.6
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 9.6e-86 321.2 353 57.5
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 2.8e-85 319.7 353 56.7
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 3.7e-85 319.3 356 56.5
PGSC0003DMG400018763 Solanum tuberosum HOM05D005714 ORTHO05D006812 3.7e-85 319.3 359 55.4
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 8.1e-85 318.2 351 55.6
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 1.4e-84 317.4 353 57.5
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 1.4e-84 317.4 353 57.5
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 2.4e-84 316.6 356 56.2
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 4.0e-84 315.8 352 57.4
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 4.0e-84 315.8 352 57.4
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 6.9e-84 315.1 356 56.2
Ah.10g037360 Amaranthus hybridus HOM05D005714 ORTHO05D006812 5.8e-83 312.0 346 54.0
PSO063G3590 Papaver somniferum HOM05D005714 ORTHO05D006812 5.8e-83 312.0 357 54.1
Aqoxy3G03832 Aquilegia oxysepala HOM05D005714 ORTHO05D006812 7.6e-83 311.6 354 55.4
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 1.3e-82 310.8 353 55.0
Nn3g17645 Nelumbo nucifera HOM05D005714 ORTHO05D006812 1.3e-82 310.8 366 53.8
ECA232G3066 Erigeron canadensis HOM05D005714 ORTHO05D006812 2.9e-82 309.7 354 54.5
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.8e-82 309.3 363 56.7
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 3.8e-82 309.3 363 56.7
Sabra04G0076700 Salix brachista HOM05D005714 ORTHO05D006812 3.8e-82 309.3 421 47.7
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 4.9e-82 308.9 354 53.4
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 4.2e-81 305.8 347 53.6
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 4.6e-80 302.4 369 52.6
FAN09G3422 Fragaria x ananassa HOM05D005714 ORTHO05D006812 1.8e-79 300.4 353 55.2
TWI74G1644 Tripterygium wilfordii HOM05D005714 ORTHO05D006812 5.1e-79 298.9 355 54.1
CAN.G551.30 Capsicum annuum HOM05D005714 ORTHO05D006812 7.4e-78 295.0 352 54.3
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 1.3e-77 294.3 359 52.9
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 2.8e-77 293.1 350 54.0
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 7.6e-75 285.0 343 52.8
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 1.1e-73 281.2 302 57.6
HanXRQChr15g0490211 Helianthus annuus HOM05D005714 ORTHO05D006812 1.1e-73 281.2 354 52.3
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.6e-72 277.3 253 64.8
vmacro05584 Vaccinium macrocarpon HOM05D005714 ORTHO05D006812 1.0e-71 274.6 401 47.9
Lsat_1_v5_gn_4_175801 Lactuca sativa HOM05D005714 ORTHO05D006812 2.3e-71 273.5 305 56.1
HPP92_027404 Vanilla planifolia HOM05D005714 ORTHO05D006812 4.8e-69 265.8 355 50.1
CDE02G2817 Ceratophyllum demersum HOM05D005714 ORTHO05D006812 4.2e-65 252.7 382 44.5
Os09g0108400 Oryza sativa ssp. japonica HOM05D005714 ORTHO05D006812 1.4e-63 247.7 353 47.0
unitig_899.g15126 Utricularia gibba HOM05D005714 ORTHO05D006812 1.1e-62 244.6 354 48.3
VMungo0464G1377 Vigna mungo HOM05D005714 ORTHO05D006812 1.5e-62 244.2 236 61.9
Glyma.19G041200 Glycine max HOM05D005714 ORTHO05D006812 2.1e-56 223.8 190 66.8
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 2.4e-52 210.3 204 63.2
Actinidia18116 Actinidia chinensis HOM05D005714 ORTHO05D006812 7.7e-51 205.3 354 45.2
Zm00001eb208920 Zea mays HOM05D005714 ORTHO05D006812 7.7e-51 205.3 333 43.2
Solyc03g046260.2 Solanum lycopersicum HOM05D005714 ORTHO05D006812 5.5e-49 199.1 233 54.5
RcHm_v2.0_Chr2g0163701 Rosa chinensis HOM05D005714 ORTHO05D006812 2.0e-46 190.7 142 73.2
TAR622G1272 Trochodendron aralioides HOM05D005714 ORTHO05D006812 6.3e-45 185.7 175 61.7
MD17G1072400 Malus domestica HOM05D005714 ORTHO05D006812 2.6e-38 163.7 205 54.1
Cfa007975 Carpinus fangiana HOM05D005714 ORTHO05D006812 7.5e-38 162.2 319 40.1
Pp3c1_6350 Physcomitrium patens HOM05D005714 ORTHO05D006812 6.3e-37 159.1 376 36.7
AagrBONN_evm.TU.Sc2ySwM_344.4539 Anthoceros agrestis HOM05D005714 ORTHO05D006812 1.7e-34 151.0 294 38.1
ATR0752G125 Amborella trichopoda HOM05D005714 ORTHO05D006812 2.5e-33 147.1 151 58.3
C09p61160 Brassica napus HOM05D005714 ORTHO05D006812 5.2e-31 139.4 113 65.5
Medtr3g067495 Medicago truncatula HOM05D005714 ORTHO05D006812 2.6e-30 137.1 94 78.7
AUR62014554 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.7e-29 134.4 238 39.9
SMO139G0044 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 1.1e-28 131.7 351 35.9
AUR62008947 Chenopodium quinoa HOM05D005714 ORTHO05D006812 1.8e-28 131.0 240 40.4
Sopen03g009720 Solanum pennellii HOM05D005714 ORTHO05D006812 1.2e-27 128.3 97 72.2
A10p17320 Brassica napus HOM05D000327 ORTHO05D006812 1.3e-21 108.2 205 42.0
SMO145G0024 Selaginella moellendorffii HOM05D005714 ORTHO05D006812 4.1e-20 103.2 261 37.5
ATR0752G036 Amborella trichopoda HOM05D005714 ORTHO05D006812 1.6e-19 101.3 227 38.8
Mapoly0066s0019 Marchantia polymorpha HOM05D005714 ORTHO05D006812 5.0e-18 96.3 374 29.1
SEGI_16525 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 2.9e-13 80.5 95 45.3
BcaB07g33635 Brassica carinata HOM05D005714 ORTHO05D006812 4.1e-12 76.6 123 44.7
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 4.1e-12 76.6 316 29.7
C09p61150 Brassica napus HOM05D005714 ORTHO05D006812 4.1e-12 76.6 82 58.5
SEGI_18448 Sequoiadendron giganteum HOM05D005714 ORTHO05D006812 1.2e-11 75.1 184 36.4
FAN09G3753 Fragaria x ananassa HOM05D001104 ORTHO05D008876 3.0e-10 70.5 89 51.7
SGA_v2.0_scaffold254G45250 Striga asiatica HOM05D005714 ORTHO05D051379 6.6e-10 69.3 46 78.3
RcHm_v2.0_Chr2g0163621 Rosa chinensis HOM05D005714 ORTHO05D006812 2.5e-09 67.4 81 49.4
RcHm_v2.0_Chr2g0163721 Rosa chinensis HOM05D005714 ORTHO05D006812 1.6e-08 64.7 70 48.6
FvH4_4g27140 Fragaria vesca HOM05D063885 ORTHO05D046237 1.2e-06 58.5 43 74.4


User provided reference genes

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