Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 3.4e-186 654.8 325 100.0
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 3.6e-111 405.6 287 72.5
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 1.4e-110 403.7 287 72.8
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 4.0e-110 402.1 287 72.1
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 4.4e-109 398.7 286 72.4
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 2.8e-108 396.0 286 71.7
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 8.3e-108 394.4 287 71.1
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 1.9e-104 383.3 335 62.4
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 2.8e-103 379.4 295 67.1
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.4e-102 377.1 295 66.8
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 4.0e-102 375.6 295 66.1
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 1.5e-101 373.6 286 67.1
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 2.6e-101 372.9 307 64.8
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 2.6e-101 372.9 286 66.8
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 3.4e-101 372.5 322 62.4
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 3.4e-101 372.5 286 67.8
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 3.4e-101 372.5 286 67.5
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 9.8e-101 370.9 286 67.5
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 9.8e-101 370.9 311 64.0
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 1.3e-100 370.5 325 60.3
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 2.2e-100 369.8 294 66.0
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 4.9e-100 368.6 307 64.5
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 6.4e-100 368.2 302 65.2
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 8.3e-100 367.9 287 65.5
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 1.1e-99 367.5 327 59.9
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 1.8e-99 366.7 278 69.1
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 2.4e-99 366.3 285 65.3
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 5.4e-99 365.2 314 62.1
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 7.0e-99 364.8 294 64.6
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 1.6e-98 363.6 287 65.9
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 5.9e-98 361.7 287 64.8
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 7.8e-98 361.3 285 63.5
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 1.0e-97 360.9 287 64.1
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.3e-97 360.5 257 70.8
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 6.6e-97 358.2 316 58.9
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 8.6e-97 357.8 291 63.9
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 1.5e-96 357.1 287 65.2
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.3e-96 355.5 316 58.2
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 4.3e-96 355.5 305 62.6
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 5.6e-96 355.1 264 68.9
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 5.6e-96 355.1 286 63.6
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 1.2e-95 354.0 282 65.2
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 2.1e-95 353.2 287 62.7
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 3.6e-95 352.4 266 69.2
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 3.6e-95 352.4 301 61.8
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 3.6e-95 352.4 257 69.6
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 6.2e-95 351.7 301 61.5
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 1.0e-94 350.9 296 61.1
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.4e-94 350.5 285 64.2
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 1.4e-94 350.5 286 62.9
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 2.3e-94 349.7 302 61.3
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 3.1e-94 349.4 259 68.7
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 5.2e-94 348.6 255 70.6
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 5.2e-94 348.6 285 65.6
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 6.8e-94 348.2 316 57.9
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 8.9e-94 347.8 257 69.3
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 8.9e-94 347.8 266 67.3
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 1.2e-93 347.4 266 67.3
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 2.6e-93 346.3 291 63.2
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.6e-93 346.3 266 66.9
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 4.4e-93 345.5 294 59.9
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 4.4e-93 345.5 295 61.7
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 5.8e-93 345.1 282 61.7
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 5.8e-93 345.1 266 68.4
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 9.8e-93 344.4 268 63.8
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 9.8e-93 344.4 294 60.2
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 9.8e-93 344.4 293 60.1
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 9.8e-93 344.4 257 69.6
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 1.3e-92 344.0 271 65.7
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 2.2e-92 343.2 296 60.5
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.9e-92 342.8 282 61.3
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 2.9e-92 342.8 260 67.3
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 3.7e-92 342.4 295 60.3
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 3.7e-92 342.4 284 61.6
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 4.9e-92 342.0 295 60.0
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 6.4e-92 341.7 259 67.6
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 8.3e-92 341.3 252 69.4
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 8.3e-92 341.3 295 59.3
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.1e-91 340.9 282 61.3
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 1.9e-91 340.1 309 57.6
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 2.4e-91 339.7 295 59.7
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 2.4e-91 339.7 303 59.1
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 3.2e-91 339.3 303 58.7
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 1.2e-90 337.4 253 67.6
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.2e-90 337.4 261 65.1
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 1.6e-90 337.0 268 63.8
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 2.7e-90 336.3 260 65.4
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 1.3e-89 334.0 313 55.9
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 8.6e-89 331.3 312 57.7
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 5.6e-88 328.6 280 61.8
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 7.3e-88 328.2 266 62.4
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 7.3e-88 328.2 266 62.4
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 9.5e-88 327.8 242 67.4
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 9.5e-88 327.8 261 62.8
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 9.5e-88 327.8 278 62.9
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 9.5e-88 327.8 243 68.7
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 1.6e-87 327.0 295 58.6
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 8.1e-87 324.7 279 59.1
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 1.4e-86 323.9 258 62.0
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 3.1e-86 322.8 284 57.4
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 6.8e-86 321.6 290 57.2
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 6.8e-86 321.6 209 77.5
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 8.9e-86 321.2 286 60.8
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.5e-85 320.5 315 53.3
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.6e-85 319.7 237 67.1
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 9.8e-85 317.8 267 59.9
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 2.2e-84 316.6 267 59.9
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 3.2e-83 312.8 283 57.6
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 5.4e-83 312.0 283 57.2
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 4.6e-82 308.9 253 61.3
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 6.0e-82 308.5 315 52.1
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 3.9e-81 305.8 296 54.7
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 5.1e-81 305.4 287 55.1
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 6.6e-81 305.1 273 56.8
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 1.5e-80 303.9 267 56.9
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 5.6e-80 302.0 259 62.2
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 2.8e-79 299.7 253 60.1
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 2.8e-79 299.7 266 57.9
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 1.4e-78 297.4 261 60.5
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 3.1e-78 296.2 286 55.9
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 1.5e-77 293.9 286 56.6
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 2.0e-77 293.5 255 55.3
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 4.4e-77 292.4 211 69.2
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 5.8e-77 292.0 296 51.7
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 9.9e-77 291.2 352 48.3
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 1.3e-76 290.8 333 52.6
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 8.4e-76 288.1 291 53.3
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 1.1e-75 287.7 286 54.2
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 1.1e-75 287.7 288 51.4
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 2.4e-75 286.6 291 52.9
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 5.4e-75 285.4 344 49.4
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 3.5e-74 282.7 282 54.6
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 3.0e-73 279.6 281 53.4
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 6.6e-73 278.5 291 51.5
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 2.5e-72 276.6 235 58.7
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 2.8e-71 273.1 286 52.1
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 8.1e-71 271.6 326 50.3
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 8.9e-70 268.1 201 66.2
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 2.0e-69 266.9 243 56.8
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 2.0e-69 266.9 243 56.8
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 3.4e-69 266.2 311 49.5
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 7.6e-69 265.0 251 52.6
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 1.6e-66 257.3 232 57.3
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 6.0e-66 255.4 267 50.9
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 3.0e-65 253.1 230 56.5
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 6.6e-65 251.9 208 64.4
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 9.6e-56 221.5 285 46.0
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 1.3e-55 221.1 193 58.0
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 3.6e-55 219.5 203 55.2
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 2.3e-49 200.3 171 63.7
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 3.9e-49 199.5 170 63.5
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 6.9e-46 188.7 152 63.8
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.7e-44 184.1 292 37.7
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 2.7e-42 176.8 194 52.6
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 5.5e-35 152.5 155 57.4
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 1.9e-32 144.1 127 56.7
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 5.7e-32 142.5 108 64.8
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 3.7e-31 139.8 94 71.3
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 9.1e-30 135.2 152 52.0
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 3.3e-24 116.7 139 46.0
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 7.4e-24 115.5 119 53.8
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 9.7e-24 115.2 84 70.2
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 1.7e-23 114.4 98 58.2
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 1.5e-21 107.8 94 58.5
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 7.7e-21 105.5 101 56.4
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.7e-20 104.4 94 57.4
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 8.5e-20 102.1 160 38.1
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 1.8e-17 94.4 177 35.6
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 1.8e-14 84.3 62 69.4
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 4.2e-11 73.2 92 46.7
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 2.7e-10 70.5 54 57.4
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 2.7e-10 70.5 54 57.4
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 6.1e-10 69.3 91 48.4
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 8.0e-10 68.9 74 52.7
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 6.7e-09 65.9 49 61.2
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 6.3e-07 59.3 39 69.2


User provided reference genes

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