Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G9644 Trifolium pratense HOM05D005916 ORTHO05D007168 7.1e-95 350.5 168 100.0
TPR.G26100 Trifolium pratense HOM05D005916 ORTHO05D007168 7.6e-65 250.8 183 71.0
Ca_10837_v3 Cicer arietinum L. HOM05D005916 ORTHO05D007168 1.4e-63 246.5 189 67.2
Phvul.007G063000 Phaseolus vulgaris HOM05D005916 ORTHO05D007168 1.9e-63 246.1 187 66.8
Glyma.10G242500 Glycine max HOM05D005916 ORTHO05D007168 3.2e-63 245.4 185 67.0
Glyma.20G151600 Glycine max HOM05D005916 ORTHO05D007168 4.2e-63 245.0 186 66.7
VMungo0720G1184 Vigna mungo HOM05D005916 ORTHO05D007168 1.6e-62 243.0 203 63.5
Medtr1g102540 Medicago truncatula HOM05D005916 ORTHO05D007168 2.7e-62 242.3 188 66.5
arahy.Tifrunner.gnm1.ann1.7NV6YZ Arachis hypogaea HOM05D005916 ORTHO05D007168 3.5e-62 241.9 189 65.6
arahy.Tifrunner.gnm1.ann1.VH0MPJ Arachis hypogaea HOM05D005916 ORTHO05D007168 3.5e-62 241.9 189 65.6
Lj5g0003841 Lotus japonicus HOM05D005916 ORTHO05D007168 4.6e-62 241.5 194 64.9
Hund13383 Selenicereus undatus HOM05D005916 ORTHO05D007168 4.6e-62 241.5 178 68.0
Psat6g202080 Pisum sativum HOM05D005916 ORTHO05D007168 1.0e-61 240.4 186 67.7
CSS0012195 Camellia sinensis var. sinensis HOM05D005916 ORTHO05D007168 1.1e-60 236.9 189 64.0
Sc17g0004780 Simmondsia chinensis HOM05D005916 ORTHO05D007168 1.9e-60 236.1 179 65.9
EL10Ac5g12406 Beta vulgaris HOM05D005916 ORTHO05D007168 2.5e-60 235.7 184 65.2
Ciclev10032791m.g Citrus clementina HOM05D005916 ORTHO05D007168 2.5e-60 235.7 205 61.0
SGA_v2.0_scaffold136G34977 Striga asiatica HOM05D005916 ORTHO05D007168 2.5e-60 235.7 127 87.4
GSVIVG01024482001 Vitis vinifera HOM05D005916 ORTHO05D007168 2.5e-60 235.7 185 63.8
BcaC04g19397 Brassica carinata HOM05D005916 ORTHO05D007168 3.3e-60 235.3 168 69.0
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 3.3e-60 235.3 168 69.0
AUR62029119 Chenopodium quinoa HOM05D005916 ORTHO05D007168 4.3e-60 235.0 169 69.2
Dinv34531 Davidia involucrata HOM05D005916 ORTHO05D007168 4.3e-60 235.0 193 62.7
Gohir.A07G044800 Gossypium hirsutum HOM05D005916 ORTHO05D007168 4.3e-60 235.0 192 64.1
BcaB08g36557 Brassica carinata HOM05D005916 ORTHO05D007168 7.4e-60 234.2 168 69.0
COL.COLO4_37304 Corchorus olitorius HOM05D005916 ORTHO05D007168 9.7e-60 233.8 122 90.2
Gorai.001G052400 Gossypium raimondii HOM05D005916 ORTHO05D007168 9.7e-60 233.8 192 63.5
Manes.06G129600 Manihot esculenta HOM05D005916 ORTHO05D007168 9.7e-60 233.8 190 63.7
Cpa.g.sc13.218 Carica papaya HOM05D005916 ORTHO05D007168 2.2e-59 232.6 190 63.7
Gohir.D07G049300 Gossypium hirsutum HOM05D005916 ORTHO05D007168 2.2e-59 232.6 192 63.5
SGA_v2.0_scaffold69G23310 Striga asiatica HOM05D005916 ORTHO05D007168 2.8e-59 232.3 130 84.6
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 3.7e-59 231.9 168 68.5
PSO782G0331 Papaver somniferum HOM05D005916 ORTHO05D007168 3.7e-59 231.9 185 63.8
vmacro09932 Vaccinium macrocarpon HOM05D005916 ORTHO05D007168 3.7e-59 231.9 196 61.7
Atru.chr6.1973 Acer truncatum HOM05D005916 ORTHO05D007168 4.8e-59 231.5 188 63.3
Oeu046440.1 Olea europaea HOM05D005916 ORTHO05D007168 6.3e-59 231.1 184 64.1
MBI04_g13855_MAGBIO Magnolia biondii HOM05D005916 ORTHO05D007168 1.4e-58 229.9 124 86.3
PSO675G3127 Papaver somniferum HOM05D005916 ORTHO05D007168 1.4e-58 229.9 188 62.8
QL09p027336 Quercus lobata HOM05D005916 ORTHO05D007168 1.4e-58 229.9 191 61.3
Potri.012G113400 Populus trichocarpa HOM05D005916 ORTHO05D007168 1.8e-58 229.6 126 84.1
Sopen03g024920 Solanum pennellii HOM05D005916 ORTHO05D007168 1.8e-58 229.6 183 63.9
CARHR192950 Cardamine hirsuta HOM05D005916 ORTHO05D007168 2.4e-58 229.2 121 86.8
PSO063G1306 Papaver somniferum HOM05D005916 ORTHO05D007168 2.4e-58 229.2 185 63.2
DCAR_014647 Daucus carota HOM05D005916 ORTHO05D007168 3.1e-58 228.8 187 63.6
Nitab4.5_0000103g0220 Nicotiana tabacum HOM05D005916 ORTHO05D007168 3.1e-58 228.8 179 64.8
PGR083G1688 Punica granatum HOM05D005916 ORTHO05D007168 3.1e-58 228.8 182 63.7
AT5G19910 Arabidopsis thaliana HOM05D005916 ORTHO05D007168 4.1e-58 228.4 164 68.9
ClCG07G017200 Citrullus lanatus HOM05D005916 ORTHO05D007168 4.1e-58 228.4 195 60.0
Solyc03g094030.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 4.1e-58 228.4 181 64.1
PGSC0003DMG403008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 4.1e-58 228.4 181 64.1
A02p05910 Brassica napus HOM05D005916 ORTHO05D007168 5.3e-58 228.0 121 87.6
BraA02t05543Z Brassica rapa HOM05D005916 ORTHO05D007168 5.3e-58 228.0 121 87.6
CsaV3_4G004400 Cucumis sativus L. HOM05D005916 ORTHO05D007168 5.3e-58 228.0 132 81.8
Potri.015G110900 Populus trichocarpa HOM05D005916 ORTHO05D007168 5.3e-58 228.0 130 82.3
Sabra15G0132700 Salix brachista HOM05D005916 ORTHO05D007168 5.3e-58 228.0 130 82.3
THA.LOC104799659 Tarenaya hassleriana HOM05D005916 ORTHO05D007168 6.9e-58 227.6 127 83.5
Migut.F01212 Erythranthe guttata HOM05D005916 ORTHO05D007168 1.2e-57 226.9 122 85.2
Eucgr.A02936 Eucalyptus grandis HOM05D005916 ORTHO05D007168 1.2e-57 226.9 187 62.0
Sp6g24470 Schrenkiella parvula HOM05D005916 ORTHO05D007168 1.2e-57 226.9 121 86.8
Prupe.2G269700 Prunus persica HOM05D005916 ORTHO05D007168 1.5e-57 226.5 195 60.5
Thecc.03G145100 Theobroma cacao HOM05D005916 ORTHO05D007168 1.5e-57 226.5 122 86.9
BNapus_Darmor_BZH_scaffold_38p01960 Brassica napus HOM05D005916 ORTHO05D007168 2.0e-57 226.1 121 86.8
BolC2t06995H Brassica oleracea HOM05D005916 ORTHO05D007168 2.0e-57 226.1 121 86.8
CANSAT56G4429 Cannabis sativa HOM05D005916 ORTHO05D007168 2.0e-57 226.1 127 82.7
MELO3C017626.2 Cucumis melo HOM05D005916 ORTHO05D007168 2.0e-57 226.1 129 82.9
Lalb_Chr24g0402981 Lupinus albus HOM05D005916 ORTHO05D007168 2.0e-57 226.1 121 86.0
MSTRG.8396 Avicennia marina HOM05D005916 ORTHO05D007168 2.6e-57 225.7 127 83.5
PSO541G5205 Papaver somniferum HOM05D005916 ORTHO05D007168 2.6e-57 225.7 122 86.1
Carub.0006s1828 Capsella rubella HOM05D005916 ORTHO05D007168 3.4e-57 225.3 121 86.0
Nn6g33759 Nelumbo nucifera HOM05D005916 ORTHO05D007168 3.4e-57 225.3 120 85.0
Sed0012421 Sechium edule HOM05D001364 ORTHO05D007168 3.4e-57 225.3 132 81.8
Thhalv10014735m.g Eutrema salsugineum HOM05D005916 ORTHO05D007168 4.5e-57 224.9 120 86.7
Aqoxy3G02650 Aquilegia oxysepala HOM05D005916 ORTHO05D007168 5.9e-57 224.6 132 81.1
TWI39G0778 Tripterygium wilfordii HOM05D005916 ORTHO05D007168 5.9e-57 224.6 122 84.4
FAN06G3885 Fragaria x ananassa HOM05D005916 ORTHO05D007168 7.7e-57 224.2 193 60.1
Aa31LG2G19640 Aethionema arabicum HOM05D005916 ORTHO05D007168 1.0e-56 223.8 123 85.4
ATR1098G017 Amborella trichopoda HOM05D005916 ORTHO05D007168 1.0e-56 223.8 121 85.1
AL6G31440 Arabidopsis lyrata HOM05D005916 ORTHO05D007168 1.0e-56 223.8 163 68.1
FvH4_7g26530 Fragaria vesca HOM05D005916 ORTHO05D007168 1.0e-56 223.8 192 59.9
Cc00_g13060 Coffea canephora HOM05D005916 ORTHO05D007168 1.3e-56 223.4 185 62.7
FAN10G1904 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.3e-56 223.4 185 61.6
RcHm_v2.0_Chr1g0373201 Rosa chinensis HOM05D005916 ORTHO05D007168 2.2e-56 222.6 181 62.4
FAN01G2833 Fragaria x ananassa HOM05D005916 ORTHO05D007168 6.5e-56 221.1 127 80.3
HPP92_020684 Vanilla planifolia HOM05D005916 ORTHO05D007168 6.5e-56 221.1 118 85.6
QL02p099223 Quercus lobata HOM05D005916 ORTHO05D007168 8.5e-56 220.7 118 86.4
Ah.01g021910 Amaranthus hybridus HOM05D005916 ORTHO05D007168 1.1e-55 220.3 174 64.9
MD01G1174300 Malus domestica HOM05D005916 ORTHO05D007168 1.1e-55 220.3 135 77.0
MD07G1241000 Malus domestica HOM05D005916 ORTHO05D007168 1.4e-55 219.9 132 78.8
ECA233G3320 Erigeron canadensis HOM05D005916 ORTHO05D007168 3.2e-55 218.8 131 79.4
CDE06G1827 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 7.2e-55 217.6 117 84.6
HanXRQChr08g0223361 Helianthus annuus HOM05D005916 ORTHO05D007168 9.4e-55 217.2 128 80.5
HanXRQChr03g0069461 Helianthus annuus HOM05D005916 ORTHO05D007168 2.1e-54 216.1 126 81.0
Lsat_1_v5_gn_8_11541 Lactuca sativa HOM05D005916 ORTHO05D007168 4.6e-54 214.9 124 81.5
EL10Ac9g22675 Beta vulgaris HOM05D005916 ORTHO05D007168 7.9e-54 214.2 183 59.6
Zm00001eb038950 Zea mays HOM05D005916 ORTHO05D007168 7.9e-54 214.2 112 86.6
Atru.chr6.592 Acer truncatum HOM05D005916 ORTHO05D007168 1.0e-53 213.8 126 77.0
FvH4_5g39330 Fragaria vesca HOM05D005916 ORTHO05D007168 1.4e-53 213.4 132 78.0
FAN08G1750 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.4e-53 213.4 132 78.0
Haze_22228 Corylus avellana HOM05D005916 ORTHO05D007168 3.0e-53 212.2 196 57.1
Nitab4.5_0003429g0010 Nicotiana tabacum HOM05D005916 ORTHO05D007168 3.0e-53 212.2 179 61.5
FAN18G1579 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.5e-52 209.9 132 77.3
FAN25G1847 Fragaria x ananassa HOM05D005916 ORTHO05D007168 1.5e-52 209.9 127 76.4
Os07g0164600 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 6.3e-51 204.5 110 83.6
Os10g0564100 Oryza sativa ssp. japonica HOM05D005916 ORTHO05D007168 6.3e-51 204.5 110 83.6
Dinv21889 Davidia involucrata HOM05D005916 ORTHO05D007168 1.2e-49 200.3 176 59.7
Mapoly0098s0031 Marchantia polymorpha HOM05D005916 ORTHO05D007168 2.0e-49 199.5 111 82.0
CAN.G297.9 Capsicum annuum HOM05D005916 ORTHO05D007168 3.8e-48 195.3 201 54.7
CiPaw.07G182800 Carya illinoinensis HOM05D005916 ORTHO05D007168 1.6e-46 189.9 200 51.0
Pp3c26_180 Physcomitrium patens HOM05D005916 ORTHO05D007168 2.7e-46 189.1 114 74.6
AagrBONN_evm.TU.Sc2ySwM_362.2892 Anthoceros agrestis HOM05D005916 ORTHO05D007168 1.1e-44 183.7 110 76.4
Hma1.2p1_1014F.1_g247870 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 5.7e-44 181.4 193 54.4
CDE06G2153 Ceratophyllum demersum HOM05D005916 ORTHO05D007168 9.7e-44 180.6 117 71.8
SEGI_39874 Sequoiadendron giganteum HOM05D005916 ORTHO05D007168 2.2e-43 179.5 142 63.4
AUR62015003 Chenopodium quinoa HOM05D005916 ORTHO05D007168 3.7e-43 178.7 91 91.2
Hma1.2p1_1014F.1_g247880 Hydrangea macrophylla HOM05D005916 ORTHO05D007168 2.4e-42 176.0 91 90.1
Lj8A49T46 Lonicera japonica HOM05D005916 ORTHO05D007168 2.0e-41 172.9 151 60.3
CAN.G706.26 Capsicum annuum HOM05D005916 ORTHO05D007168 2.9e-40 169.1 158 57.0
Rhsim09G0188200 Rhododendron simsii HOM05D001364 ORTHO05D001316 1.9e-39 166.4 192 50.0
SalBow2G2523 Salvia bowleyana HOM05D005916 ORTHO05D007168 1.7e-35 153.3 89 80.9
SMO197G0072 Selaginella moellendorffii HOM05D005916 ORTHO05D007168 4.1e-34 148.7 82 80.5
PRCOL_00001580 Prasinoderma coloniale HOM05D005916 ORTHO05D007168 1.8e-29 133.3 101 57.4
Dinv34527 Davidia involucrata HOM05D005916 ORTHO05D007168 4.2e-23 112.1 59 86.4
MCO04G185 Micromonas commoda HOM05D005916 ORTHO05D007168 3.6e-22 109.0 93 53.8
Peaxi162Scf00073g01818 Petunia axillaris HOM05D005916 ORTHO05D007168 4.4e-20 102.1 120 46.7
Actinidia31761 Actinidia chinensis HOM05D005916 ORTHO05D007168 1.3e-19 100.5 193 35.8
unitig_90.g27553 Utricularia gibba HOM05D005916 ORTHO05D007168 4.9e-19 98.6 50 86.0
Pp3c13_24550 Physcomitrium patens HOM05D005916 ORTHO05D007168 8.3e-19 97.8 105 45.7
CBR_g3263 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-16 90.5 83 55.4
Cre12.g520850 Chlamydomonas reinhardtii HOM05D005916 ORTHO05D007168 2.3e-13 79.7 115 38.3
Actinidia01032 Actinidia chinensis HOM05D005916 ORTHO05D007168 2.6e-12 76.3 176 35.8
SalBow2G0368 Salvia bowleyana HOM05D005916 ORTHO05D007168 5.4e-10 68.6 42 73.8
Solyc03g094070.4 Solanum lycopersicum HOM05D005916 ORTHO05D007168 2.0e-09 66.6 91 42.9
FAN21G1143 Fragaria x ananassa HOM05D005916 ORTHO05D007168 5.9e-09 65.1 49 59.2
Cfa025999 Carpinus fangiana HOM05D005916 ORTHO05D007168 1.2e-06 57.4 83 43.4
PGSC0003DMG401008332 Solanum tuberosum HOM05D005916 ORTHO05D007168 3.6e-06 55.8 34 70.6
FAN11G3144 Fragaria x ananassa HOM05D005916 ORTHO05D007168 8.0e-06 54.7 96 40.6


User provided reference genes

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